mRNA_F-serratus_M_contig1529.3632.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1529.3632.1 vs. uniprot
Match: A0A6H5JUE4_9PHAE (Proteasome subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE4_9PHAE) HSP 1 Score: 401 bits (1031), Expect = 7.010e-135 Identity = 211/289 (73.01%), Postives = 233/289 (80.62%), Query Frame = 3
Query: 138 LESTVFARSPWLSSSGPGGEPSWTTEAGLEDLR---RQRPSEARRSLASSLVDAPHGLEESRRNGAGFEPYANNGGTAVAVAGRDFCIIAADTRLSDGYSILSRNVSRVYRLSENTHLATAGCWADTQGLLRLLRYLIRDYEIRQRRPMETKAVSRMLSTHLYYRRSFPFYTFNIVGGLDEEGIGAVYGYDAVGSFERTRVACAGGGLNLMQPVLDRLDADKGKRGGDTG-----ECPVVAVGLEEALSLVKKAFVAGGERDISLGDAVEIVILTREGQRRERLDLKSH 980
L T + W S PSWTTE +E+L R++ + +A SL+ P GLEESRRNGAGFEPYANNGGT VAVAG D+CIIAAD+RLSDGY+ILSRNV+RV+RLS +THLATAGCWADTQGLLRLL YLIRDYE+ QRR M TKAVSRMLSTHLYYRR FPFYTFNIVGGLDEEGIGAVYGYDAVGSFER RVACAGGGL+LMQPVLDRLDA + G G E PVVAVGLEEAL+LV+KAFVAGGERDISLGD VEIV++TR+G RRERL LKSH
Sbjct: 16 LGGTGVVNASWTSGRRRSAGPSWTTEGDIEELAGAGRRQLGQQGTPIAESLLQTPPGLEESRRNGAGFEPYANNGGTVVAVAGPDYCIIAADSRLSDGYTILSRNVTRVHRLSGDTHLATAGCWADTQGLLRLLEYLIRDYEMEQRRTMGTKAVSRMLSTHLYYRRGFPFYTFNIVGGLDEEGIGAVYGYDAVGSFERVRVACAGGGLSLMQPVLDRLDAAEAATGAGGGQRAGREQPVVAVGLEEALALVRKAFVAGGERDISLGDEVEIVVVTRKGHRRERLQLKSH 304
BLAST of mRNA_F-serratus_M_contig1529.3632.1 vs. uniprot
Match: D8LKA7_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKA7_ECTSI) HSP 1 Score: 365 bits (938), Expect = 1.170e-121 Identity = 191/235 (81.28%), Postives = 207/235 (88.09%), Query Frame = 3
Query: 294 HGLEESR-RNGAGFEPYANNGGTAVAVAGRDFCIIAADTRLSDGYSILSRNVSRVYRLSENTHLATAGCWADTQGLLRLLRYLIRDYEIRQRRPMETKAVSRMLSTHLYYRRSFPFYTFNIVGGLDEEGIGAVYGYDAVGSFERTRVACAGGGLNLMQPVLDRLDADKGKRG----GDTG-ECPVVAVGLEEALSLVKKAFVAGGERDISLGDAVEIVILTREGQRRERLDLKSH 980
HGL + RNGAGFEPYANNGGT VAVAG D+CIIAAD+RLSDGY+ILSRNV+RV+RLS +THLATAGCWADTQGLLRLL YLIRDYE+ QRR M TKAVSRMLSTHLYYRR FPFYTFNIVGGLDEEGIGAVYGYDAVGSFER RVACAGGGL+LMQPVLDRLDA + G G G E PVVAVGLEEAL+LV++AFVAGGERDISLGD VEIV++TR+G RRERL LKSH
Sbjct: 15 HGLRRATSRNGAGFEPYANNGGTVVAVAGPDYCIIAADSRLSDGYTILSRNVTRVHRLSGDTHLATAGCWADTQGLLRLLEYLIRDYEMEQRRTMGTKAVSRMLSTHLYYRRGFPFYTFNIVGGLDEEGIGAVYGYDAVGSFERVRVACAGGGLSLMQPVLDRLDAAEAVTGAGGCGRAGREQPVVAVGLEEALALVRRAFVAGGERDISLGDEVEIVVVTRQGHRRERLQLKSH 249
BLAST of mRNA_F-serratus_M_contig1529.3632.1 vs. uniprot
Match: A0A835YWZ6_9STRA (Nucleophile aminohydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ6_9STRA) HSP 1 Score: 235 bits (599), Expect = 5.220e-70 Identity = 121/227 (53.30%), Postives = 161/227 (70.93%), Query Frame = 3
Query: 303 EESRRNGAGFEPYANNGGTAVAVAGRDFCIIAADTRLSDGYSILSRNVSRVYRLS-ENTHLATAGCWADTQGLLRLLRYLIRDYEIRQRRPMETKAVSRMLSTHLYYRRSFPFYTFNIVGGLDEEGIGAVYGYDAVGSFERTRVACAGGGLNLMQPVLDRLDADKGKRGGDTGECPVVAVGLEEALSLVKKAFVAGGERDISLGDAVEIVILTREGQRRERLDLKSH 980
E+ + G++PY +NGGT VAVAG DF II ADTRLS Y+ILSR V+R++ +S T + TAGCW+DTQGLL+ ++ L+ DYE +Q+ + T A++R+LS LY RRSFPFYT NIV GLD EG GAVYGYD VGSFER +VAC GGG +L+QP++D L D+ P+V+V ++AL LVK+ FVA ERDI++GD EI+++ +G R RL L +H
Sbjct: 77 EQVSKRADGWQPYEDNGGTVVAVAGPDFVIIGADTRLSVNYNILSRKVTRIHGISGARTFIGTAGCWSDTQGLLKAMQGLVGDYEWQQQHSISTAALARLLSNVLYSRRSFPFYTHNIVAGLDREGAGAVYGYDPVGSFERVKVACVGGGRSLLQPIMDHLAGDQDS--SLDRRKPLVSVSCDDALELVKEGFVAAAERDIAIGDEAEILVIDAQGVTRHRLALGTH 301
BLAST of mRNA_F-serratus_M_contig1529.3632.1 vs. uniprot
Match: A0A250X805_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X805_9CHLO) HSP 1 Score: 206 bits (524), Expect = 5.080e-60 Identity = 110/216 (50.93%), Postives = 150/216 (69.44%), Query Frame = 3
Query: 330 FEPYANNGGTAVAVAGRDFCIIAADTRLSDGYSILSRNVSRVYRLSENTHLATAGCWADTQGLLRLLRYLIRDYEIRQRRPMETKAVSRMLSTHLYYRRSFPFYTFNIVGGLDEEGIGAVYGYDAVGSFERTRVACAGGGLNLMQPVLD-RLDADKGKRGGDTGECPVVAVGLEEALSLVKKAFVAGGERDISLGDAVEIVILTREGQRRERLDLK 974
+ PY +NGGT +AVAG D+CIIAA TR+S GYSIL+R+ S++ +LS + +AG AD + L ++L+ Y+ +PM AV+++LS LYY+R FP+YTFNIV GLD+ G+GAVY YDA+GS+ER+ AC G G L+QPVLD +L AD + ++ L++AL LVK AF + GERDI GD VEIVI+T+EG R+ERL+LK
Sbjct: 3 WSPYDDNGGTVLAVAGLDYCIIAACTRMSTGYSILTRDSSKILQLSNEVCITSAGMQADAKALHKVLQMRNIMYQHNHSKPMSVSAVAQLLSNTLYYKRFFPYYTFNIVAGLDDAGVGAVYAYDAIGSYERSGYACQGSGKGLIQPVLDNQLKADSPLLIPPRNT--ITSLPLDQALDLVKDAFTSAGERDIYTGDEVEIVIITKEGTRKERLELK 216
BLAST of mRNA_F-serratus_M_contig1529.3632.1 vs. uniprot
Match: A0A0L0DN64_THETB (Proteasome subunit beta n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DN64_THETB) HSP 1 Score: 204 bits (520), Expect = 1.760e-58 Identity = 118/271 (43.54%), Postives = 165/271 (60.89%), Query Frame = 3
Query: 165 PWLSSSGPGGEPSWTTEAGLEDLRRQRPSEARRSLASSLVDAPHGLEESRRNGAGFEPYANNGGTAVAVAGRDFCIIAADTRLSDGYSILSRNVSRVYRLSENTHLATAGCWADTQGLLRLLRYLIRDYEIRQRRPMETKAVSRMLSTHLYYRRSFPFYTFNIVGGLDEEGIGAVYGYDAVGSFERTRVACAGGGLNLMQPVLD-RLDADKGKRGGDTGECPVVAVGLEEALSLVKKAFVAGGERDISLGDAVEIVILTREGQRRERLDLK 974
P L S GP G + G +Q P R A+S A + + A F PY NGGTA+A+AG+DFCI+A DTR+S GY I +RN + YR+++ +A AG AD L+++LR+ I YE + +PM T+++++++ST LY RR FP Y F ++GGLDE+G+G+VYGYDAVGSFER+ G G +L+QPVLD + D D + L+E++ LVK FV+ GERDI GD+VE+ I+T +G R E DLK
Sbjct: 30 PSLGSHGPSGPMAARLATG-----KQAPVAPSRFSAASSSSAAVTVGSGPKTAA-FSPYVLNGGTALALAGKDFCIVAGDTRMSAGYEIHTRNKPKTYRINDKCSIAMAGMQADATNLIKMLRFRIAMYERKMGKPMSTQSLAQLVSTTLYRRRFFPIYAFVVIGGLDEDGVGSVYGYDAVGSFERSTCCVQGSGTSLLQPVLDNQFDFKNHSIKPDE-------LTLDESIDLVKDVFVSAGERDIYTGDSVEMHIITADGVRVETFDLK 287
BLAST of mRNA_F-serratus_M_contig1529.3632.1 vs. uniprot
Match: A0A2K3CN11_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3CN11_CHLRE) HSP 1 Score: 202 bits (514), Expect = 3.670e-58 Identity = 114/239 (47.70%), Postives = 152/239 (63.60%), Query Frame = 3
Query: 267 LASSLVDAPHGLEESRRNGAGFEPYANNGGTAVAVAGRDFCIIAADTRLSDGYSILSRNVSRVYRLSENTHLATAGCWADTQGLLRLLRYLIRDYEIRQRRPMETKAVSRMLSTHLYYRRSFPFYTFNIVGGLDEEGIGAVYGYDAVGSFERTRVACAGGGLNLMQPVLDRLDADKGKRGGDTGECP---VVAVGLEEALSLVKKAFVAGGERDISLGDAVEIVILTREGQRRERLDLK 974
L + L + +R A + PY +NGGT VAVAG D+CI+AA TR+S G+SIL+R + + +LS+ +A+AG AD + L +LL+ Y RPM A +++LS LYY+R FPFYTFN+ GLDE+G GAVY YDA+GS+ER+ C G G L+QPVLD ++ K P + A+ LE+AL LVK AFV+ GERDI GD VEI+I+TREG RR+ L LK
Sbjct: 10 LGNPLSKVQADAADGQRQHAAWSPYDDNGGTVVAVAGEDYCIVAASTRMSTGFSILTREATMMLQLSDKVVIASAGMQADRKALHKLLQARHVMYVHNHGRPMSLPATAQLLSNTLYYKRFFPFYTFNLCAGLDEQGRGAVYNYDAIGSYERSGYFCQGSGKELIQPVLD----NQLKAASPLALPPQNTLTALPLEQALDLVKDAFVSAGERDIYTGDQVEILIITREGVRRDSLQLK 244
BLAST of mRNA_F-serratus_M_contig1529.3632.1 vs. uniprot
Match: L1JTG0_GUITC (Proteasome subunit beta n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JTG0_GUITC) HSP 1 Score: 200 bits (509), Expect = 1.220e-57 Identity = 114/236 (48.31%), Postives = 152/236 (64.41%), Query Frame = 3
Query: 267 LASSLVDAPHGLEESRRNGAGFEPYANNGGTAVAVAGRDFCIIAADTRLSDGYSILSRNVSRVYRLSENTHLATAGCWADTQGLLRLLRYLIRDYEIRQRRPMETKAVSRMLSTHLYYRRSFPFYTFNIVGGLDEEGIGAVYGYDAVGSFERTRVACAGGGLNLMQPVLDRLDADKGKRGGDTGECPVVAVGLEEALSLVKKAFVAGGERDISLGDAVEIVILTREGQRRERLDLK 974
L +S V+ P +ESR F PY NNGGT +A+AG DFCIIAAD+RLS GYSILSRN +V +L+ T +A++GC AD L + L++ I+ Y + + M T AV++ML+T LY+RR FP+YTFNIVGGLD+ G G V+ YDA+G FER + +G G L++P LD L A K +T P + +E L LVK F + GERDI GD V+I I+ + G R E+ LK
Sbjct: 6 LPTSQVEQP---KESR-----FSPYQNNGGTCLALAGADFCIIAADSRLSLGYSILSRNTPKVAQLTTKTCIASSGCNADMVTLQKYLKFKIQMYLHQHGKEMSTPAVAQMLATTLYHRRFFPYYTFNIVGGLDQNGEGCVFSYDAIGCFERLKYTVSGSGHALIEPFLDNLVAYK-----NTDNKPTIERSCDETLELVKDIFSSAGERDIYTGDFVDIYIIDKNGTRYEQFPLK 228
BLAST of mRNA_F-serratus_M_contig1529.3632.1 vs. uniprot
Match: A0A7S1C425_9STRA (Proteasome subunit beta n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C425_9STRA) HSP 1 Score: 202 bits (513), Expect = 1.830e-57 Identity = 103/217 (47.47%), Postives = 142/217 (65.44%), Query Frame = 3
Query: 327 GFEPYANNGGTAVAVAGRDFCIIAADTRLSDGYSILSRNVSRVYRLSENTHLATAGCWADTQGLLRLLRYLIRDYEIRQRRPMETKAVSRMLSTHLYYRRSFPFYTFNIVGGLDEEGIGAVYGYDAVGSFERTRVACAGGGLNLMQPVLDRLDADKGKRGGDTGECPVVAVGLEEALSLVKKAFVAGGERDISLGDAVEIVILTREGQRRERLDLKS 977
G+ PY NGGTA+ +AG DFC++A DTRLS GYSILSR+V+R L+++ +AT GCW D Q L ++L+ + YE + AV++ML LYYRR FP+Y FN+VGG+D EG GAV+ YDAVGSFER + A G G L+ P+LD L +K + P + ++E + ++K FV GERDI GD V+I I+T +G R+ER +LK+
Sbjct: 77 GWSPYDFNGGTALGIAGDDFCVLACDTRLSTGYSILSRDVNRAAVLTDHCVVATGGCWTDVQTLHKVLKSRVDMYEHEHESAITCTAVAQMLGNTLYYRRFFPYYAFNVVGGIDAEGKGAVFTYDAVGSFERVKYAAQGAGQKLIIPLLDNLVGNKNRTD------PARNLSIDETVEMMKDVFVTAGERDIYTGDNVDIYIMTADGMRKERFELKA 287
BLAST of mRNA_F-serratus_M_contig1529.3632.1 vs. uniprot
Match: A0A7S0NAI0_9EUKA (Proteasome subunit beta n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0NAI0_9EUKA) HSP 1 Score: 200 bits (509), Expect = 2.480e-57 Identity = 113/250 (45.20%), Postives = 156/250 (62.40%), Query Frame = 3
Query: 231 LRRQRPSEARRSLASSLVDAPHGLEESRRNGA---GFEPYANNGGTAVAVAGRDFCIIAADTRLSDGYSILSRNVSRVYRLSENTHLATAGCWADTQGLLRLLRYLIRDYEIRQRRPMETKAVSRMLSTHLYYRRSFPFYTFNIVGGLDEEGIGAVYGYDAVGSFERTRVACAGGGLNLMQPVLDRLDADKGKRGGDTGECPVVAVGLEEALSLVKKAFVAGGERDISLGDAVEIVILTREGQRRERLDL 971
L+ +RP + S+ + P +E + GA F PY NGGT +AVAG+DFCI+A DTR+S G+SI SRNVS++Y+L+ N L TAG D L +LLR + YE + M+ AV +ML LY RR FP+YT+N+VGGLDE+G G VY YD VG++ER RV+ G +L+QP+LD + ++ G+ + L+E ++LVK AF + GERDI GD+VEI I+T+EG R E L
Sbjct: 3 LQPERPPATSHAAQSACGEGP--VEAAAHAGAMQARFSPYDYNGGTTLAVAGKDFCIVAGDTRMSTGFSIKSRNVSKIYKLAGNVVLGTAGFRGDITTLQKLLRAKLTSYEHQHGVTMKAHAVGQMLGNTLYGRRFFPYYTWNVVGGLDEDGCGVVYSYDPVGNYERVRVSVTGSAESLIQPLLDNQLERQHQQLGEKPPPLCTDLSLQETINLVKDAFYSAGERDIRTGDSVEICIITKEGVRMESYPL 250
BLAST of mRNA_F-serratus_M_contig1529.3632.1 vs. uniprot
Match: A0A2P6TE46_CHLSO (Proteasome subunit beta n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TE46_CHLSO) HSP 1 Score: 199 bits (507), Expect = 3.180e-57 Identity = 110/229 (48.03%), Postives = 150/229 (65.50%), Query Frame = 3
Query: 315 RNGAGFEPYANNGGTAVAVAGRDFCIIAADTRLSDGYSILSRNVSRVYRLSENTHLATAGCWADTQGLLRLLRYLIRDYEIRQRRPMETKAVSRMLSTHLYYRRSFPFYTFNIVGGLDEEGIGAVYGYDAVGSFERTRVACAGGGLNLMQPVLD-RLDADKGKRGGDTGECPVV--------AVGLEEALSLVKKAFVAGGERDISLGDAVEIVILTREGQRRERLDLK 974
R A + PY +NGGT VAVAG D+C++AA TR+S GYSIL+R+ +++ RL+ +A+AG AD + L ++L Y+ R+PM A +++LS LYY+R FP+YTFN+ GLDEEG GAVY YDA+GS+ER C G G L+QPVLD +L A P+V ++ LE+A+ LVK AFV+ GERDI GD VEI+I+T+EG R +RL+LK
Sbjct: 19 RQHASWSPYDDNGGTVVAVAGDDYCVVAASTRMSTGYSILTRDKTKILRLNPKCVVASAGMQADMETLHKMLHMRHVTYQFNHRKPMSCPATAQLLSNTLYYKRFFPYYTFNLCAGLDEEGKGAVYTYDAIGSYERVGYGCQGSGKELIQPVLDNQLKAAS----------PLVLPQQQWLSSLPLEQAVDLVKGAFVSAGERDIYTGDDVEILIITKEGVRTDRLELK 237 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1529.3632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1529.3632.1 >prot_F-serratus_M_contig1529.3632.1 ID=prot_F-serratus_M_contig1529.3632.1|Name=mRNA_F-serratus_M_contig1529.3632.1|organism=Fucus serratus male|type=polypeptide|length=298bp MLIMRISCISITLAVLLESTVFARSPWLSSSGPGGEPSWTTEAGLEDLRRback to top mRNA from alignment at F-serratus_M_contig1529:159499..163199- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1529.3632.1 ID=mRNA_F-serratus_M_contig1529.3632.1|Name=mRNA_F-serratus_M_contig1529.3632.1|organism=Fucus serratus male|type=mRNA|length=3701bp|location=Sequence derived from alignment at F-serratus_M_contig1529:159499..163199- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1529:159499..163199- >mRNA_F-serratus_M_contig1529.3632.1 ID=mRNA_F-serratus_M_contig1529.3632.1|Name=mRNA_F-serratus_M_contig1529.3632.1|organism=Fucus serratus male|type=CDS|length=1788bp|location=Sequence derived from alignment at F-serratus_M_contig1529:159499..163199- (Fucus serratus male)back to top |