mRNA_F-serratus_M_contig1528.3628.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1528.3628.1
Unique NamemRNA_F-serratus_M_contig1528.3628.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1528.3628.1 vs. uniprot
Match: D7G5Y3_ECTSI (Heat shock protein 40 like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y3_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 3.560e-35
Identity = 73/110 (66.36%), Postives = 86/110 (78.18%), Query Frame = 3 
Query:  738 RNAGRTDAFTAALDDATDMGFAWAKNMTRRRQEAMEKKDRADEAYASGLYLVAQELYTEAIGVDEEDILTNALLYANRAAALTNLGKNKDALKDCEQALRLKPNYAEVLL 1067
            RNAG+TD F  AL  AT  G  WA +MTRRRQ+ M+KK+RA +AYAS  Y +A ELY+EAI VD +D  TNALL+ANRAAAL NL +NKDALKDC +ALRLKPNY +VLL
Sbjct:  109 RNAGQTDKFKEALAAATGTGVPWAMSMTRRRQDVMDKKERAGKAYASNRYRLAHELYSEAICVDPQDYYTNALLFANRAAALMNLARNKDALKDCIEALRLKPNYPKVLL 218
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BLAST of mRNA_F-serratus_M_contig1528.3628.1 vs. uniprot
Match: A0A261Y4L9_9FUNG (J domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y4L9_9FUNG)

HSP 1 Score: 75.9 bits (185), Expect = 2.040e-11
Identity = 34/91 (37.36%), Postives = 59/91 (64.84%), Query Frame = 3 
Query:  789 DMGFAWAKNMTRRRQEAMEKKDRADEAYASGLYLVAQELYTEAIGVDEEDILTNALLYANRAAALTNLGKNKDALKDCEQALRLKPNYAEV 1061
            D  +  A+ + ++ +    KK+  +EA+ +G Y  A  LYTEA+ +D ++  TNA LY+NRA  L  LG++ +A++DC++AL L P++ +V
Sbjct:  232 DPDYTKARTLLKQARSLEAKKNEGNEAFKAGRYTEAHALYTEALAIDPDNFGTNAKLYSNRATVLAKLGRDAEAIQDCDRALELDPSFTKV 322
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BLAST of mRNA_F-serratus_M_contig1528.3628.1 vs. uniprot
Match: A0A8H8DIQ7_9FUNG (J domain-containing protein n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H8DIQ7_9FUNG)

HSP 1 Score: 73.6 bits (179), Expect = 6.880e-11
Identity = 40/109 (36.70%), Postives = 64/109 (58.72%), Query Frame = 3 
Query:  747 GRTDAFTAALDDA--TDMGFAWAKNMTRRRQEAMEKKDRADEAYASGLYLVAQELYTEAIGVDEEDILTNALLYANRAAALTNLGKNKDALKDCEQALRLKPNYAEVLL 1067
            G +D     L +A   D   A A+ + +  ++   +K   + A+ +G Y+ A ELY+ A+  D +++ TNA L++NRAA L  +GK K+A+ DC+QAL L P +A V L
Sbjct:  138 GESDKCVRHLQEALRVDPDCARARKLLKLTKQLELQKGNGNAAFKAGRYVEAAELYSAALKCDPDNVQTNAKLFSNRAACLAKIGKYKEAIADCDQALDLDPEFARVYL 246
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BLAST of mRNA_F-serratus_M_contig1528.3628.1 vs. uniprot
Match: A0A2G8K595_STIJA (Putative dnaJ-like subfamily C member 7 n=2 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8K595_STIJA)

HSP 1 Score: 72.0 bits (175), Expect = 3.270e-10
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 3 
Query:  843 EKKDRADEAYASGLYLVAQELYTEAIGVDEEDILTNALLYANRAAALTNLGKNKDALKDCEQALRLKPNYAEVLL 1067
            +KKD+ ++A+  G Y  A +LYTEA+ +DE ++LTNA LY NRA   + LGK +DA+ DC  A++L   Y +  +
Sbjct:  204 QKKDQGNDAFKKGRYQEACDLYTEALEIDEHNVLTNAKLYCNRANVRSKLGKLEDAISDCSSAIKLDGKYQKAYM 278
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BLAST of mRNA_F-serratus_M_contig1528.3628.1 vs. uniprot
Match: UPI0006D4EA45 (dnaJ homolog subfamily C member 7 n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D4EA45)

HSP 1 Score: 68.6 bits (166), Expect = 4.900e-9
Identity = 46/153 (30.07%), Postives = 75/153 (49.02%), Query Frame = 3 
Query:  609 CPHNINKYRWSHVRAPDHQLYLKFQLRHYLGMLKSGTFLWHPHRNAGRTDAFTAALDDATDMGFAWAKNMTRRRQEAMEKKDRADEAYASGLYLVAQELYTEAIGVDEEDILTNALLYANRAAALTNLGKNKDALKDCEQALRLKPNYAEVLL 1067
            C   + +Y+ +   A D    L    +H   +L  G  L++        + F   L  A D   + A  + ++ +   +KK+  +EA+  G    A +LYTEA+G+D  ++ TNA LY NRA   + LG+  +A+ DC  AL L  NY + L+
Sbjct:  185 CLARLGRYQEAQELAND---VLSNDKQHADAILVRGMCLYYQDNVDRAFNHFQHVLKLAPD--HSKALEIYKKAKALKQKKEEGNEAFKQGKNKEAYDLYTEALGIDPNNVSTNAKLYFNRATVSSKLGRLNEAVSDCSAALELDSNYIKALM 332
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BLAST of mRNA_F-serratus_M_contig1528.3628.1 vs. uniprot
Match: UPI000B4EC9A8 (dnaJ homolog subfamily C member 7 n=1 Tax=Meriones unguiculatus TaxID=10047 RepID=UPI000B4EC9A8)

HSP 1 Score: 67.0 bits (162), Expect = 1.720e-8
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 3 
Query:  846 KKDRADEAYASGLYLVAQELYTEAIGVDEEDILTNALLYANRAAALTNLGKNKDALKDCEQALRLKPNYAEVLL 1067
            KK+  ++A+  G Y +A ELYTEA+G+D  +I TNA LY NR    + L K +DA++DC  A++L   Y +  L
Sbjct:  259 KKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLEDAIEDCTNAVKLDDTYVKAYL 332
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BLAST of mRNA_F-serratus_M_contig1528.3628.1 vs. uniprot
Match: A0A8C0H6H3_CHEAB (DnaJ heat shock protein family (Hsp40) member C7 n=3 Tax=Testudinoidea TaxID=8486 RepID=A0A8C0H6H3_CHEAB)

HSP 1 Score: 66.6 bits (161), Expect = 2.000e-8
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 3 
Query:  846 KKDRADEAYASGLYLVAQELYTEAIGVDEEDILTNALLYANRAAALTNLGKNKDALKDCEQALRLKPNYAEVLL 1067
            KK+  ++A+  G Y +A ELYTEA+G+D  +I TNA LY NR    + L K +DA+ DC +A++L   Y +  L
Sbjct:  249 KKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLEDAIDDCTKAIKLDDTYIKAYL 322
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BLAST of mRNA_F-serratus_M_contig1528.3628.1 vs. uniprot
Match: UPI000EAB3786 (dnaJ homolog subfamily C member 7 isoform X1 n=3 Tax=Ceratina calcarata TaxID=156304 RepID=UPI000EAB3786)

HSP 1 Score: 66.6 bits (161), Expect = 2.120e-8
Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 3 
Query:  807 AKNMTRRRQEAMEKKDRADEAYASGLYLVAQELYTEAIGVDEEDILTNALLYANRAAALTNLGKNKDALKDCEQALRLKPNYAEVLL 1067
            A  M +R +   +KK+  + AY S  Y  A  LYTEA+ +D +++ TNA L+ N+      LG+ K+++ +C +AL+L  NY + LL
Sbjct:  266 ALEMYKRAKSLKKKKEEGNAAYKSEQYQKAYNLYTEALAIDPQNVATNAKLHFNKGMVAAKLGRLKESVTECSEALKLDANYLKALL 352
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BLAST of mRNA_F-serratus_M_contig1528.3628.1 vs. uniprot
Match: A0A8D2AH28_SCIVU (J domain-containing protein n=3 Tax=Amniota TaxID=32524 RepID=A0A8D2AH28_SCIVU)

HSP 1 Score: 65.9 bits (159), Expect = 2.190e-8
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 3 
Query:  846 KKDRADEAYASGLYLVAQELYTEAIGVDEEDILTNALLYANRAAALTNLGKNKDALKDCEQALRLKPNYAEVLL 1067
            KK+  ++A+  G Y +A ELYTEA+G+D  +I TNA LY NR    + L K  DA++DC  A++L   Y +  L
Sbjct:   95 KKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTHAVKLDDTYIKAYL 168
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BLAST of mRNA_F-serratus_M_contig1528.3628.1 vs. uniprot
Match: A0A7J7T495_MYOMY (DnaJ heat shock protein family (Hsp40) member C7 n=1 Tax=Myotis myotis TaxID=51298 RepID=A0A7J7T495_MYOMY)

HSP 1 Score: 65.9 bits (159), Expect = 2.270e-8
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 3 
Query:  846 KKDRADEAYASGLYLVAQELYTEAIGVDEEDILTNALLYANRAAALTNLGKNKDALKDCEQALRLKPNYAEVLL 1067
            KK+  ++A+  G Y +A ELYTEA+G+D  +I TNA LY NR    + L K  DA++DC  A++L   Y +  L
Sbjct:  100 KKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTSAVKLDDTYIKAYL 173
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1528.3628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5Y3_ECTSI3.560e-3566.36Heat shock protein 40 like protein n=1 Tax=Ectocar... [more]
A0A261Y4L9_9FUNG2.040e-1137.36J domain-containing protein n=1 Tax=Bifiguratus ad... [more]
A0A8H8DIQ7_9FUNG6.880e-1136.70J domain-containing protein n=1 Tax=Olpidium borno... [more]
A0A2G8K595_STIJA3.270e-1044.00Putative dnaJ-like subfamily C member 7 n=2 Tax=St... [more]
UPI0006D4EA454.900e-930.07dnaJ homolog subfamily C member 7 n=1 Tax=Halyomor... [more]
UPI000B4EC9A81.720e-843.24dnaJ homolog subfamily C member 7 n=1 Tax=Meriones... [more]
A0A8C0H6H3_CHEAB2.000e-843.24DnaJ heat shock protein family (Hsp40) member C7 n... [more]
UPI000EAB37862.120e-836.78dnaJ homolog subfamily C member 7 isoform X1 n=3 T... [more]
A0A8D2AH28_SCIVU2.190e-843.24J domain-containing protein n=3 Tax=Amniota TaxID=... [more]
A0A7J7T495_MYOMY2.270e-843.24DnaJ heat shock protein family (Hsp40) member C7 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1528contigF-serratus_M_contig1528:224175..226351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue2.6e-32
Seed eggNOG ortholog2880.D7G5Y3
KEGG koko:K09523,ko:K09524,ko:K09527,ko:K09536
KEGG Pathwayko04141,ko05164,map04141,map05164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsCOG0484@1,KOG0550@2759,KOG0713@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons3
Model size1069
Cds size366
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1528.3628.1prot_F-serratus_M_contig1528.3628.1Fucus serratus malepolypeptideF-serratus_M_contig1528 224876..226351 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929516.1260386-UTR-F-serratus_M_contig1528:224174..2248751622929516.1260386-UTR-F-serratus_M_contig1528:224174..224875Fucus serratus maleUTRF-serratus_M_contig1528 224175..224875 +
1690962888.1856744-UTR-F-serratus_M_contig1528:224174..2248751690962888.1856744-UTR-F-serratus_M_contig1528:224174..224875Fucus serratus maleUTRF-serratus_M_contig1528 224175..224875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929516.1385872-CDS-F-serratus_M_contig1528:224875..2250281622929516.1385872-CDS-F-serratus_M_contig1528:224875..225028Fucus serratus maleCDSF-serratus_M_contig1528 224876..225028 +
1690962888.1981263-CDS-F-serratus_M_contig1528:224875..2250281690962888.1981263-CDS-F-serratus_M_contig1528:224875..225028Fucus serratus maleCDSF-serratus_M_contig1528 224876..225028 +
1622929516.157139-CDS-F-serratus_M_contig1528:225585..2257591622929516.157139-CDS-F-serratus_M_contig1528:225585..225759Fucus serratus maleCDSF-serratus_M_contig1528 225586..225759 +
1690962888.2075129-CDS-F-serratus_M_contig1528:225585..2257591690962888.2075129-CDS-F-serratus_M_contig1528:225585..225759Fucus serratus maleCDSF-serratus_M_contig1528 225586..225759 +
1622929516.1760607-CDS-F-serratus_M_contig1528:226312..2263511622929516.1760607-CDS-F-serratus_M_contig1528:226312..226351Fucus serratus maleCDSF-serratus_M_contig1528 226313..226351 +
1690962888.2166345-CDS-F-serratus_M_contig1528:226312..2263511690962888.2166345-CDS-F-serratus_M_contig1528:226312..226351Fucus serratus maleCDSF-serratus_M_contig1528 226313..226351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1528.3628.1

>prot_F-serratus_M_contig1528.3628.1 ID=prot_F-serratus_M_contig1528.3628.1|Name=mRNA_F-serratus_M_contig1528.3628.1|organism=Fucus serratus male|type=polypeptide|length=122bp
MLKSGTFLWHPHRNAGRTDAFTAALDDATDMGFAWAKNMTRRRQEAMEKK
DRADEAYASGLYLVAQELYTEAIGVDEEDILTNALLYANRAAALTNLGKN
KDALKDCEQALRLKPNYAEVLL
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mRNA from alignment at F-serratus_M_contig1528:224175..226351+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1528.3628.1 ID=mRNA_F-serratus_M_contig1528.3628.1|Name=mRNA_F-serratus_M_contig1528.3628.1|organism=Fucus serratus male|type=mRNA|length=2177bp|location=Sequence derived from alignment at F-serratus_M_contig1528:224175..226351+ (Fucus serratus male)
GACTACTGTACGCGTGAAACGAGCAAGATTTTGTGCCAATAGCTAGCTAC
CGGTATAATAGCTCCAGGTACCTTTACGTGGCGCTAAACACAACGGTGGT
AACCTCAAGAGCATGACATGAACCACGAAGGAGAGGCCGATCTGCCTCCT
CTGATTAGATCCCACCAATATTTTGTCTGCATGATTAAATCCCGCATCCA
ACATCACTTTATACTGTAGTACAGCATACAGTGATGTAGTTTTTTTGCAG
TCATGCAGCTCTATTAATAGTCTATAGCTCTAAATTCTGGAACACTGCTG
TGAGCTTCCATCCAGTTTCCTTCGTGTTGAGACTGAGACACTAAAGCTCT
AAATGCTGGAACACTGCGGTGGGCTTCCATCCAGCTTCCTTGGTGTCGGG
ACACACGATTGTTATATTACTAATAGGCCTCTTTACTTTTTTTTGTGGAC
TTCGATGAGCCTTGGACGCCACTATTAATAGCAACCCACGACCTGCGTCT
TCGATTTCTGAGTAAGTCACCATAAGATAGGTTCCCTCGTCTTTTATCCT
GCGAAGCATTCCTTGCTCATTTCCTATTAATATTATAGGATTTTTTTGCT
TCGATTTTTGTCCCCATAATATTAATAAATATAGATGGTCTCACGTACGT
GCACCAGACCACCAATTATATTTGAAGTTTCAGCTTCGCCATTATCTTGG
TATGCTGAAAAGTGGCACGTTTTTATGGCACCCTCACAGGAATGCCGGGA
GAACGGACGCCTTCACGGCGGCGCTGGATGATGCAACTGACATGGGCTTT
GCATGGGCAAAGAATATGACGCGCCGGCGACAGGAAGCGATGGAAAAGAA
AGACGTGAGCACGGGGAAACGTCTGCCGTGGGTGTACTACCGTAGGCTAA
AGAACATTACACGAGCATTACCGTAACCCTCGTAACACCATTATAGTACC
AAAATAAGTTGAATTGACATCCGCCCGCCTCAGTGTTTTCGTGACTCCTT
CAAATTTACCAAAAGTAGAGGGCGGGCTACCGGTACAGTATCTCTAGTAT
CTCTAGTATCTGTACAACATATGCTGCTATTAATAGAGAGGAGGGAAGGG
ATGGAGAGAACAGAACGGCTGATTCCGCCGCAGGGAAAAAGGAGAGCCTT
GATTAGTTTATATGGTACTCCGGTATTATACTTAATGCCTGTACAAGTAG
CAGTGATAGCAGTGAAACCTCTACGCTACAGTAAAAGCCAGTAGCCTAGG
TTTGCATGGGTTGAGATTAGCGGTACGGTTTCGCGTGTCTTCAGATTTTA
AGATTTTAGCTGTCCAACGTTATCGTCTGGCATCCCCGGTTCCCCCTCCG
CTTGTAACCCAACCCGCCTCCGCTCGTCCTCTCGTCCTCTCGTCCTCTCG
TTGATATCCAGCGCGCCGACGAAGCTTACGCTTCTGGTCTTTACCTCGTG
GCCCAAGAGCTGTATACCGAGGCCATTGGCGTGGATGAAGAAGACATCCT
CACCAATGCACTTCTTTACGCCAACCGGGCTGCAGCTCTTACGAACCTCG
GGAAGAACAAAGACGCGCTGAAGGACTGTGAGCAGGCGAGTGGATATGCC
TCGAAACGTCTTTGGCTTCTGGTCTCCACGACGATGGTAACGGCGACGGC
CACCTGCGGTTGCGAACAGCGCTTGACTCTTGTCACACACACGGTTACGA
GTACCACATGCTATTTTCGATGCACTTGGCGACTCATCGATCACTGCAAG
TAGTCCACCAGGTATAGGAGTATATGTCGAACAAGTTGGGGAGCTGCTTG
AAACGGCTGGTTGCACGTGTGTTTTCCAGGCGTGGGGCTATTGAATAGTC
GTGACAACCGCCGGAAATAGCACAGCGGCAATGCTGTTTTTTTTTTTTTT
TTTCTATACGATCACGTGATGAGAGTGAAGCACGTCGATTGAGAAAGTGT
GAAGGTGTAGAGATAATGCAGACAGTATGATGAGACGCTAGTAATAGTAA
CAGTAATACGAAGTAGACTACTTACTGATATAAAGATATAATTACTACTT
AGTACAGTATAAATGTTGTACAAGCGGTCTCAAGGACGATGGAAGAACGT
TCTCTCTTTCTTGTTGATATGGTGTATGGATCGCGCAGGCGCTCCGGCTC
AAGCCCAACTATGCTGAGGTGCTCCTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1528:224175..226351+

>mRNA_F-serratus_M_contig1528.3628.1 ID=mRNA_F-serratus_M_contig1528.3628.1|Name=mRNA_F-serratus_M_contig1528.3628.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig1528:224175..226351+ (Fucus serratus male)
ATGCTGAAAAGTGGCACGTTTTTATGGCACCCTCACAGGAATGCCGGGAG
AACGGACGCCTTCACGGCGGCGCTGGATGATGCAACTGACATGGGCTTTG
CATGGGCAAAGAATATGACGCGCCGGCGACAGGAAGCGATGGAAAAGAAA
GACATGCTGAAAAGTGGCACGTTTTTATGGCACCCTCACAGGAATGCCGG
GAGAACGGACGCCTTCACGGCGGCGCTGGATGATGCAACTGACATGGGCT
TTGCATGGGCAAAGAATATGACGCGCCGGCGACAGGAAGCGATGGAAAAG
AAAGACCGCGCCGACGAAGCTTACGCTTCTGGTCTTTACCTCGTGGCCCA
AGAGCTGTATACCGAGGCCATTGGCGTGGATGAAGAAGACATCCTCACCA
ATGCACTTCTTTACGCCAACCGGGCTGCAGCTCTTACGAACCTCGGGAAG
AACAAAGACGCGCTGAAGGACTGTGAGCAGCGCGCCGACGAAGCTTACGC
TTCTGGTCTTTACCTCGTGGCCCAAGAGCTGTATACCGAGGCCATTGGCG
TGGATGAAGAAGACATCCTCACCAATGCACTTCTTTACGCCAACCGGGCT
GCAGCTCTTACGAACCTCGGGAAGAACAAAGACGCGCTGAAGGACTGTGA
GCAGGCGCTCCGGCTCAAGCCCAACTATGCTGAGGTGCTCCTGGCGCTCC
GGCTCAAGCCCAACTATGCTGAGGTGCTCCTG
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