mRNA_F-serratus_M_contig1528.3627.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1528.3627.1
Unique NamemRNA_F-serratus_M_contig1528.3627.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1528.3627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1528contigF-serratus_M_contig1528:218237..221236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size207
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1528.3627.1prot_F-serratus_M_contig1528.3627.1Fucus serratus malepolypeptideF-serratus_M_contig1528 218237..221236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929516.045602-CDS-F-serratus_M_contig1528:218236..2183081622929516.045602-CDS-F-serratus_M_contig1528:218236..218308Fucus serratus maleCDSF-serratus_M_contig1528 218237..218308 +
1690962888.1512659-CDS-F-serratus_M_contig1528:218236..2183081690962888.1512659-CDS-F-serratus_M_contig1528:218236..218308Fucus serratus maleCDSF-serratus_M_contig1528 218237..218308 +
1622929516.0699663-CDS-F-serratus_M_contig1528:219269..2193531622929516.0699663-CDS-F-serratus_M_contig1528:219269..219353Fucus serratus maleCDSF-serratus_M_contig1528 219270..219353 +
1690962888.1626592-CDS-F-serratus_M_contig1528:219269..2193531690962888.1626592-CDS-F-serratus_M_contig1528:219269..219353Fucus serratus maleCDSF-serratus_M_contig1528 219270..219353 +
1622929516.0842474-CDS-F-serratus_M_contig1528:221185..2212361622929516.0842474-CDS-F-serratus_M_contig1528:221185..221236Fucus serratus maleCDSF-serratus_M_contig1528 221186..221236 +
1690962888.176457-CDS-F-serratus_M_contig1528:221185..2212361690962888.176457-CDS-F-serratus_M_contig1528:221185..221236Fucus serratus maleCDSF-serratus_M_contig1528 221186..221236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1528.3627.1

>prot_F-serratus_M_contig1528.3627.1 ID=prot_F-serratus_M_contig1528.3627.1|Name=mRNA_F-serratus_M_contig1528.3627.1|organism=Fucus serratus male|type=polypeptide|length=69bp
MLGRYVYAIADCGLALLADIGYDRAYPILGKAYLLVGKLEQAEDVFRAGM
RKDSDCEEDELQDEKCRLG
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mRNA from alignment at F-serratus_M_contig1528:218237..221236+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1528.3627.1 ID=mRNA_F-serratus_M_contig1528.3627.1|Name=mRNA_F-serratus_M_contig1528.3627.1|organism=Fucus serratus male|type=mRNA|length=3000bp|location=Sequence derived from alignment at F-serratus_M_contig1528:218237..221236+ (Fucus serratus male)
ATGCTCGGCCGATATGTGTACGCGATCGCCGACTGCGGGTTGGCCCTTTT
GGCCGACATCGGCTACGACCGGGTGATGACGATGATACTCTCAGTTCGTG
CCTGTATTGAAGTTGTTATTGATTTCTAGAGTAATACTCCAGTATTAATA
TCAATAGTTGGATGGTCTGGGAGGTACACTCCAGAGTGCGTGAAATCTTT
CGAAAGTGTTTGCAAATATATAGTCTAGACCCGATTGCTTGAATGGAACT
ATGTATATCGTTATGCCATCAAGTAGAGACGTGAGCCGCTAACTGTTTTT
ATAATGTTTTGAGAGTCAAAATGCTTGGTAGCGGTTATGGAACGATTAAG
AGGGAAATATACACAAAAACTACCAGTATATACATACGACTACGAATACT
CATCCACACATTTTTTTTATGTATACAGTAGAGCCATTTATGGCGTTCAA
CATAACCGCGCCATCAGACGACTTCGTACTTATCATTCGAAGCTACATAC
CAGTATTAATTACAATACATATTAATAGCCGTGTTGCTTCTCCCAAGGGG
AGTGTTCTTCGCATCGACCGACTGAAGCCTGATCATACACCCTCCACTGC
AGTACAAAGTAATCCAGGATAGTACTGTATTAATGATGAGAAATAACACA
ATACTAGTATAATACAATGAAAAACAGAAAGGAAAGAAGAGTTGACTACA
AGTATTTACAGTACATTGCCTCACGAAGATCGGAGAACCACAGCAATAGA
ATGGAAAATAGGGGGGGAGGGGTTCCAACGGGAGACGCCAAAGCCGAGAC
GATAAGGTACAGGTACAGTATTTATACATATTTCTACCGGGCGGCATTGT
TATTTGTCTGATTGTCCTACTGCTACCTGGTATCATATTTAGGTGGAATG
CTTATATAGTACCAGGTAATACTTGTAGTCTAAACAGTACAGCCAGTGTG
ATGATGGAAGAGCTTTTCGTGTTTGGTGCGTGTGTGTATGTTCGTTCTTT
TTGTGTTTGGTGCATGTTTTGATGTTGTGACAGGCGTACCCGATATTGGG
CAAGGCATACTTGCTGGTGGGAAAGCTGGAGCAGGCCGAAGACGTCTTCA
GGGCAGGCATGCGAAAGGTGAGAAATAAAGAAATAAGAGGGAAGAAGGGT
GGACGGAGACGGAGTCTGCTTTTCTCCCTGACACGCTCGGTGCATGTTGA
TGGCAGTAATATAAGGCTGTATTAATAATATTAATGGTACCAGGTATTAA
TAGTAGCTGTTCAGCATTCATGGTTCCCACGCGCAAGCATAGCTCGAAGG
GTCGGTTCTAACGAAGCCGAAAAAATTGGCAAATTTGGAGATTTCCCATA
CTTGGTACCATTAATATTAATACTAGGTTTCTAATGCAGCGTTCTTTCCA
AAGTTTAGAGATGACGCCTCAAGACCTTTTATGAATACCCTCTAATTTAA
GGGTGGCTTCTTCACTTCGAGACCAAGTGAAGCCAACGTGACTTCCGATA
AGTTCAAGTTCTTGATCCCAAGTGCCTCTAACTCCCACTATTAATAAATA
TAATGCTATCTCAACGGATAAGCCAAGTTTCAGACGAAGATATATCTTTT
AGCCGGAACAGCCCCCAAAACGATATTCTCGAGGCGATCTGCTCTCCAAA
AGCATACATTGCCACGGTTTTAAGCTCTATCGGCTACATGCTGTATCGAA
AGAAGCGCTTGAGTTCCCTTTGCTGCAGGTGCCCCTCAGAGTCTTATGTC
GATTTTTAGGTCCCGAGATGGCTTGTGGCTTTTGATCTTGTTGCTGGTGC
GTCTATTATTATTATAAGTTAATACTCCGGAGTAATGAATAATGAATCCG
ATGCAGCACCTCCCGAGAAGGCCCTCAAAACCAATACGAGTATAATCTGA
CCAATCTAGAGGTTGTTTTTCTTAACGTCGCAATCAGGCGTCAAGTACCT
CGGTTCGTTTCCCTACTTAAGTCAAGAGCTTTAGAAATTGTGGCCACTTG
CAAACGTGGAAAGCAGATCGCCTCAAGAGTCCCGTCCTGGCAGCAGTTTG
CAGTTTATAACGTGCTGATGGTGATTGTACCGACCACAGAATATACCTTT
TTGTGTCTTGAAATTTAATTTCGTTTTTCCGTTGTTGCCAGTCTGAGTGA
GTTGGCGGCCCTTGGGATCAAGAATTTGATTCGCCCGGTTCTCTACAGCT
ACGATTTAATATACCAGGTAGTTATCGGAGGTTACGTTGGCTTGACTGGT
TTGGGAAAATGCCTAATTTACCACTCATTGCCGGTCGCCTCGGCCCCGGT
AGCTCAGAGGTAACCTCGTAACCTTCTGACACGTTGGGACGTGAGTTCGA
TCCTGGCAAACGGGATTTTTCTCACTAAGAACTAAAAACAAAATAAAAAA
TGCCCAACGAGTGGAGAGCGATTGAATTGTTAACACACAAAATTCGACTT
CACGGTCGACGAGGGAAAAGGAATGGCTGAATCCTTCTCGCGAGAAAAAT
TAAGGCACGCACCGCAGAGGGAAGGTGGATGAGAAATCCTGTGTGACCCC
GGCTGGCACGTCCAACGAACTTGATGTCCAGAATGAATGGGAAGAAAACA
CACACACATGCTTCGATCCCTACGGTACAGTACGTACAAATACGACGAAT
CGTGTTCAATATCGCCCGACAGGTCTGAAGCACCCAAGGGTGACTAAGAA
CTCAACTTTCGAGCAATCTCCATTGGGTTTTTTGGGGGGGGGGGCAAATT
CTTGCGTTAGAACCGACCCTAACAGTATAATCAAAAGTAATATTATTAGT
ATCAATACTGTTAACAACACGTGGTAGTACTATAACAGTAAAAATAATAC
CGTAGTATGTATACTTGCCTTATTAAAAATAAGATTTGCACTCGGCCGTC
TCTGTTTCCTCTCCATGGCACGCGTTCTTTTGTTGCATTGAATGTTCAGG
ATAGCGACTGCGAAGAGGATGAGCTCCAAGACGAGAAATGTCGCCTCGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1528:218237..221236+

>mRNA_F-serratus_M_contig1528.3627.1 ID=mRNA_F-serratus_M_contig1528.3627.1|Name=mRNA_F-serratus_M_contig1528.3627.1|organism=Fucus serratus male|type=CDS|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig1528:218237..221236+ (Fucus serratus male)
ATGCTCGGCCGATATGTGTACGCGATCGCCGACTGCGGGTTGGCCCTTTT
GGCCGACATCGGCTACGACCGGATGCTCGGCCGATATGTGTACGCGATCG
CCGACTGCGGGTTGGCCCTTTTGGCCGACATCGGCTACGACCGGGCGTAC
CCGATATTGGGCAAGGCATACTTGCTGGTGGGAAAGCTGGAGCAGGCCGA
AGACGTCTTCAGGGCAGGCATGCGAAAGGCGTACCCGATATTGGGCAAGG
CATACTTGCTGGTGGGAAAGCTGGAGCAGGCCGAAGACGTCTTCAGGGCA
GGCATGCGAAAGGATAGCGACTGCGAAGAGGATGAGCTCCAAGACGAGAA
ATGTCGCCTCGGCGATAGCGACTGCGAAGAGGATGAGCTCCAAGACGAGA
AATGTCGCCTCGGC
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