mRNA_F-serratus_M_contig1528.3626.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1528.3626.1
Unique NamemRNA_F-serratus_M_contig1528.3626.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1528.3626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1528contigF-serratus_M_contig1528:188422..191217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2796
Cds size1863
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1528.3626.1prot_F-serratus_M_contig1528.3626.1Fucus serratus malepolypeptideF-serratus_M_contig1528 188833..190695 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929513.189351-UTR-F-serratus_M_contig1528:188421..1888321622929513.189351-UTR-F-serratus_M_contig1528:188421..188832Fucus serratus maleUTRF-serratus_M_contig1528 188422..188832 +
1690962886.8240244-UTR-F-serratus_M_contig1528:188421..1888321690962886.8240244-UTR-F-serratus_M_contig1528:188421..188832Fucus serratus maleUTRF-serratus_M_contig1528 188422..188832 +
1622929513.2236617-UTR-F-serratus_M_contig1528:190695..1912171622929513.2236617-UTR-F-serratus_M_contig1528:190695..191217Fucus serratus maleUTRF-serratus_M_contig1528 190696..191217 +
1690962886.8414228-UTR-F-serratus_M_contig1528:190695..1912171690962886.8414228-UTR-F-serratus_M_contig1528:190695..191217Fucus serratus maleUTRF-serratus_M_contig1528 190696..191217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929513.2080605-CDS-F-serratus_M_contig1528:188832..1906951622929513.2080605-CDS-F-serratus_M_contig1528:188832..190695Fucus serratus maleCDSF-serratus_M_contig1528 188833..190695 +
1690962886.8330824-CDS-F-serratus_M_contig1528:188832..1906951690962886.8330824-CDS-F-serratus_M_contig1528:188832..190695Fucus serratus maleCDSF-serratus_M_contig1528 188833..190695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1528.3626.1

>prot_F-serratus_M_contig1528.3626.1 ID=prot_F-serratus_M_contig1528.3626.1|Name=mRNA_F-serratus_M_contig1528.3626.1|organism=Fucus serratus male|type=polypeptide|length=621bp
MVYVTEDVRRPDARRQGAYTEKRESEKRGSDVCNTGGTPLRGDSRDTDYC
LGSGGLMKNQISAEDVEWPSRARDVGGVHDHHCEGRNESEANMLLTDPEG
EDEGEIGRSVLNELLYDDDFEEDGRDLCFPESEEDDTSLPSDSPSNGAHE
VTSKNGCASTKAEKNEVICEDTKARQNGDAFVIQRAWHRMAASNRVKENL
RQRRLGVENAAVLRIQRAVRVCIEERRHRRLHENETGRGDSAKNLQRWLV
ARRAKPEAQLHQMRAEAAIQIQSAVRGKHAYHNARELRRYQEEPRTVVAG
KIQTLKCRGKVTDEKQAPCPGRDDWASDLTTERDEHQEQVTQMAGRYLAQ
TSRRDESGVDPSSWKDPPFAGGIEIEKKDRDLSTRDDLCAGVLSESIAPS
AQASVSTNSSSSLTSAGLRSSLSAFEFPSYSQLSNLNDSLGEESSSTGSS
DNPNLLREKRRHGQQKPEADDDQAKYPETAKSVVGKNAPSSERHEENALD
KDTSKVQVRVVTSAGTEDVRDFSTAKLDDGVCRLPSDADGPSVLANDNGQ
KDRVNTTATGPESGTAVSTVIDVALNSTTNNVITPSPVHEGHAPGETFED
IFGEIDLFALSSSSSSRRSI*
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mRNA from alignment at F-serratus_M_contig1528:188422..191217+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1528.3626.1 ID=mRNA_F-serratus_M_contig1528.3626.1|Name=mRNA_F-serratus_M_contig1528.3626.1|organism=Fucus serratus male|type=mRNA|length=2796bp|location=Sequence derived from alignment at F-serratus_M_contig1528:188422..191217+ (Fucus serratus male)
GGGGAGAGGGGGGAGCAGGAGTGCTGGCAGAAGGAGTTACAAGCTCGACA
TAGAACTGAAGGGAATGAAGCGTCAGCGGGATTCGACGGGAGAGAAATAT
TCTGGCAGCTTCCAGATGGTATTGTTGAAGTCGAAACAGTCGGTGATAGC
GGCAAGAAAGAATCCGAAATATGGCGTTTATCAGGGGACACCGGGCTAGC
AAACGTGTCGCCTGTCAACTCCCAACACGTCCTTGGGCAAACAACACAAA
ACAATCAAAAGGGTAGAGAGGTAGGTAGACGTGTTGCAGAAAAAACAGTT
GTAGCAAGCAAAAGCAAAATTGCGTGTACAAACGAAGGGGTGGAGCTCAT
CCATGCATCCAGCGAGAAGGAAATCTCCCCGGCGCAAACTTGGAGGGCAA
ACAATGACGCCATGGTCTACGTCACTGAAGATGTCCGGCGACCGGATGCT
AGACGCCAGGGAGCGTATACAGAAAAAAGGGAGAGTGAGAAGCGCGGAAG
TGACGTCTGCAACACCGGCGGGACGCCATTGCGGGGAGACTCTCGAGACA
CTGATTACTGCCTTGGGTCTGGAGGTCTAATGAAGAATCAGATATCAGCG
GAAGATGTTGAATGGCCATCTCGGGCAAGGGATGTGGGTGGTGTTCACGA
TCACCATTGTGAGGGAAGAAATGAATCTGAAGCAAATATGCTGCTGACAG
ATCCCGAAGGAGAGGACGAAGGGGAGATCGGCAGAAGCGTGCTTAACGAA
CTCCTCTACGACGACGACTTTGAGGAAGACGGGCGGGATCTCTGCTTTCC
CGAATCAGAGGAGGACGACACCAGCCTCCCAAGTGACAGCCCGAGCAATG
GTGCACACGAAGTGACCTCGAAGAACGGATGCGCTAGTACTAAAGCTGAG
AAAAATGAGGTAATTTGCGAGGATACGAAAGCACGACAAAATGGTGACGC
TTTCGTCATTCAACGCGCTTGGCACCGGATGGCAGCAAGTAATAGGGTAA
AGGAAAATCTCCGACAGCGCAGGTTGGGGGTAGAGAACGCGGCAGTTTTG
CGGATTCAAAGAGCGGTAAGGGTATGTATCGAGGAGAGGAGACATCGCCG
TCTTCATGAAAATGAGACCGGAAGGGGGGATAGTGCTAAGAATCTGCAAC
GTTGGTTGGTTGCTAGGCGAGCAAAGCCCGAGGCGCAGCTCCACCAAATG
CGGGCAGAAGCAGCCATACAAATCCAGAGCGCAGTCAGGGGAAAACACGC
TTACCACAACGCGAGAGAGCTCCGTCGCTATCAGGAGGAACCAAGAACAG
TTGTCGCAGGGAAGATTCAGACATTGAAGTGCCGGGGGAAGGTGACGGAT
GAAAAGCAGGCACCCTGTCCCGGTAGGGATGATTGGGCATCCGACTTGAC
GACAGAGAGAGACGAGCATCAAGAGCAAGTCACTCAAATGGCCGGAAGAT
ATCTAGCACAAACCTCTAGACGCGACGAAAGCGGGGTAGACCCATCGTCT
TGGAAGGATCCTCCGTTTGCAGGTGGTATCGAAATAGAAAAAAAAGACCG
GGACTTGTCGACGCGCGACGACTTGTGTGCCGGTGTTTTGTCTGAATCTA
TTGCCCCGTCGGCTCAAGCGTCAGTCTCAACGAACTCCTCATCGTCCCTT
ACGAGTGCAGGCCTTCGTTCTTCATTATCCGCTTTTGAATTCCCATCGTA
TAGCCAGCTAAGTAACTTAAATGACAGTCTCGGCGAAGAAAGTTCTTCCA
CTGGAAGCAGTGACAATCCCAATCTGCTCCGTGAAAAGCGTCGACATGGA
CAACAAAAGCCAGAAGCGGACGACGACCAGGCGAAATACCCGGAAACCGC
AAAATCGGTGGTAGGAAAAAACGCGCCGTCATCGGAACGGCACGAGGAGA
ACGCTCTCGACAAGGATACCTCCAAAGTACAGGTAAGAGTGGTGACCTCG
GCAGGAACGGAAGACGTGCGAGACTTTTCGACAGCCAAGCTTGACGATGG
TGTCTGCCGCTTGCCCAGCGATGCCGATGGTCCATCGGTGCTGGCAAACG
ACAACGGTCAAAAGGATCGGGTGAACACGACTGCTACAGGTCCAGAGAGT
GGTACTGCTGTCTCCACCGTCATAGACGTGGCGCTGAATAGCACCACAAA
CAACGTGATTACGCCATCGCCTGTCCATGAGGGTCACGCGCCAGGCGAAA
CGTTTGAGGACATTTTCGGAGAAATTGATCTCTTTGCACTGTCCTCGAGT
TCTAGCAGCAGACGTAGCATTTGATTTGCGCGGCGCAATATGTCAAGAAT
CATCACGCCCGTTGACGACGGGGTTCTCTCAAAACCAATCCGGTGAAAAT
GGTGGCCAAGTTCACCGAGCTTACACCAGTTGCTCGAAATGGGGGAGACG
CAGGTTTATATGTCAACTCTGCCGATTCCGGCGGCTCGTTGCTATCGTTC
AGTACGTCGGATAGCGGCAATATGAGAATGAAAAGTGGAGGGTTTCGTCC
CTGAGCTTTTTCAAAGGAGTTTTGGCCCTACAAAAATGAGTCTTCCGTCG
CATTGCAAAGTAAAGTGTGCCTATTTTTCGGGAAGATGTATTTTTCGTGT
ACCCTGTCTCATATGCTGCCCCGTGCCAGACTGACCTAGAGTGTCCATTG
GCTGCTGATTTTAGCTGATTGAAAATATATTATTGACCTTTCTAAATACC
CCGCGTGACCCACTTGGGAGTAAAGCGCGAAAAGCCAGTATTGCGCTGGT
GATCAATGCTAATATCGAGCCATCTGCCCGTAGATGCTCACAGCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1528:188422..191217+

>mRNA_F-serratus_M_contig1528.3626.1 ID=mRNA_F-serratus_M_contig1528.3626.1|Name=mRNA_F-serratus_M_contig1528.3626.1|organism=Fucus serratus male|type=CDS|length=3726bp|location=Sequence derived from alignment at F-serratus_M_contig1528:188422..191217+ (Fucus serratus male)
ATGGTCTACGTCACTGAAGATGTCCGGCGACCGGATGCTAGACGCCAGGG
AGCGTATACAGAAAAAAGGGAGAGTGAGAAGCGCGGAAGTGACGTCTGCA
ACACCGGCGGGACGCCATTGCGGGGAGACTCTCGAGACACTGATTACTGC
CTTGGGTCTGGAGGTCTAATGAAGAATCAGATATCAGCGGAAGATGTTGA
ATGGCCATCTCGGGCAAGGGATGTGGGTGGTGTTCACGATCACCATTGTG
AGGGAAGAAATGAATCTGAAGCAAATATGCTGCTGACAGATCCCGAAGGA
GAGGACGAAGGGGAGATCGGCAGAAGCGTGCTTAACGAACTCCTCTACGA
CGACGACTTTGAGGAAGACGGGCGGGATCTCTGCTTTCCCGAATCAGAGG
AGGACGACACCAGCCTCCCAAGTGACAGCCCGAGCAATGGTGCACACGAA
GTGACCTCGAAGAACGGATGCGCTAGTACTAAAGCTGAGAAAAATGAGGT
AATTTGCGAGGATACGAAAGCACGACAAAATGGTGACGCTTTCGTCATTC
AACGCGCTTGGCACCGGATGGCAGCAAGTAATAGGGTAAAGGAAAATCTC
CGACAGCGCAGGTTGGGGGTAGAGAACGCGGCAGTTTTGCGGATTCAAAG
AGCGGTAAGGGTATGTATCGAGGAGAGGAGACATCGCCGTCTTCATGAAA
ATGAGACCGGAAGGGGGGATAGTGCTAAGAATCTGCAACGTTGGTTGGTT
GCTAGGCGAGCAAAGCCCGAGGCGCAGCTCCACCAAATGCGGGCAGAAGC
AGCCATACAAATCCAGAGCGCAGTCAGGGGAAAACACGCTTACCACAACG
CGAGAGAGCTCCGTCGCTATCAGGAGGAACCAAGAACAGTTGTCGCAGGG
AAGATTCAGACATTGAAGTGCCGGGGGAAGGTGACGGATGAAAAGCAGGC
ACCCTGTCCCGGTAGGGATGATTGGGCATCCGACTTGACGACAGAGAGAG
ACGAGCATCAAGAGCAAGTCACTCAAATGGCCGGAAGATATCTAGCACAA
ACCTCTAGACGCGACGAAAGCGGGGTAGACCCATCGTCTTGGAAGGATCC
TCCGTTTGCAGGTGGTATCGAAATAGAAAAAAAAGACCGGGACTTGTCGA
CGCGCGACGACTTGTGTGCCGGTGTTTTGTCTGAATCTATTGCCCCGTCG
GCTCAAGCGTCAGTCTCAACGAACTCCTCATCGTCCCTTACGAGTGCAGG
CCTTCGTTCTTCATTATCCGCTTTTGAATTCCCATCGTATAGCCAGCTAA
GTAACTTAAATGACAGTCTCGGCGAAGAAAGTTCTTCCACTGGAAGCAGT
GACAATCCCAATCTGCTCCGTGAAAAGCGTCGACATGGACAACAAAAGCC
AGAAGCGGACGACGACCAGGCGAAATACCCGGAAACCGCAAAATCGGTGG
TAGGAAAAAACGCGCCGTCATCGGAACGGCACGAGGAGAACGCTCTCGAC
AAGGATACCTCCAAAGTACAGGTAAGAGTGGTGACCTCGGCAGGAACGGA
AGACGTGCGAGACTTTTCGACAGCCAAGCTTGACGATGGTGTCTGCCGCT
TGCCCAGCGATGCCGATGGTCCATCGGTGCTGGCAAACGACAACGGTCAA
AAGGATCGGGTGAACACGACTGCTACAGGTCCAGAGAGTGGTACTGCTGT
CTCCACCGTCATAGACGTGGCGCTGAATAGCACCACAAACAACGTGATTA
CGCCATCGCCTGTCCATGAGGGTCACGCGCCAGGCGAAACGTTTGAGGAC
ATTTTCGGAGAAATTGATCTCTTTGCACTGTCCTCGAGTTCTAGCAGCAG
ACGTAGCATTTGAATGGTCTACGTCACTGAAGATGTCCGGCGACCGGATG
CTAGACGCCAGGGAGCGTATACAGAAAAAAGGGAGAGTGAGAAGCGCGGA
AGTGACGTCTGCAACACCGGCGGGACGCCATTGCGGGGAGACTCTCGAGA
CACTGATTACTGCCTTGGGTCTGGAGGTCTAATGAAGAATCAGATATCAG
CGGAAGATGTTGAATGGCCATCTCGGGCAAGGGATGTGGGTGGTGTTCAC
GATCACCATTGTGAGGGAAGAAATGAATCTGAAGCAAATATGCTGCTGAC
AGATCCCGAAGGAGAGGACGAAGGGGAGATCGGCAGAAGCGTGCTTAACG
AACTCCTCTACGACGACGACTTTGAGGAAGACGGGCGGGATCTCTGCTTT
CCCGAATCAGAGGAGGACGACACCAGCCTCCCAAGTGACAGCCCGAGCAA
TGGTGCACACGAAGTGACCTCGAAGAACGGATGCGCTAGTACTAAAGCTG
AGAAAAATGAGGTAATTTGCGAGGATACGAAAGCACGACAAAATGGTGAC
GCTTTCGTCATTCAACGCGCTTGGCACCGGATGGCAGCAAGTAATAGGGT
AAAGGAAAATCTCCGACAGCGCAGGTTGGGGGTAGAGAACGCGGCAGTTT
TGCGGATTCAAAGAGCGGTAAGGGTATGTATCGAGGAGAGGAGACATCGC
CGTCTTCATGAAAATGAGACCGGAAGGGGGGATAGTGCTAAGAATCTGCA
ACGTTGGTTGGTTGCTAGGCGAGCAAAGCCCGAGGCGCAGCTCCACCAAA
TGCGGGCAGAAGCAGCCATACAAATCCAGAGCGCAGTCAGGGGAAAACAC
GCTTACCACAACGCGAGAGAGCTCCGTCGCTATCAGGAGGAACCAAGAAC
AGTTGTCGCAGGGAAGATTCAGACATTGAAGTGCCGGGGGAAGGTGACGG
ATGAAAAGCAGGCACCCTGTCCCGGTAGGGATGATTGGGCATCCGACTTG
ACGACAGAGAGAGACGAGCATCAAGAGCAAGTCACTCAAATGGCCGGAAG
ATATCTAGCACAAACCTCTAGACGCGACGAAAGCGGGGTAGACCCATCGT
CTTGGAAGGATCCTCCGTTTGCAGGTGGTATCGAAATAGAAAAAAAAGAC
CGGGACTTGTCGACGCGCGACGACTTGTGTGCCGGTGTTTTGTCTGAATC
TATTGCCCCGTCGGCTCAAGCGTCAGTCTCAACGAACTCCTCATCGTCCC
TTACGAGTGCAGGCCTTCGTTCTTCATTATCCGCTTTTGAATTCCCATCG
TATAGCCAGCTAAGTAACTTAAATGACAGTCTCGGCGAAGAAAGTTCTTC
CACTGGAAGCAGTGACAATCCCAATCTGCTCCGTGAAAAGCGTCGACATG
GACAACAAAAGCCAGAAGCGGACGACGACCAGGCGAAATACCCGGAAACC
GCAAAATCGGTGGTAGGAAAAAACGCGCCGTCATCGGAACGGCACGAGGA
GAACGCTCTCGACAAGGATACCTCCAAAGTACAGGTAAGAGTGGTGACCT
CGGCAGGAACGGAAGACGTGCGAGACTTTTCGACAGCCAAGCTTGACGAT
GGTGTCTGCCGCTTGCCCAGCGATGCCGATGGTCCATCGGTGCTGGCAAA
CGACAACGGTCAAAAGGATCGGGTGAACACGACTGCTACAGGTCCAGAGA
GTGGTACTGCTGTCTCCACCGTCATAGACGTGGCGCTGAATAGCACCACA
AACAACGTGATTACGCCATCGCCTGTCCATGAGGGTCACGCGCCAGGCGA
AACGTTTGAGGACATTTTCGGAGAAATTGATCTCTTTGCACTGTCCTCGA
GTTCTAGCAGCAGACGTAGCATTTGA
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