mRNA_F-serratus_M_contig1528.3625.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1528.3625.1
Unique NamemRNA_F-serratus_M_contig1528.3625.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1528.3625.1 vs. uniprot
Match: D7FNH7_ECTSI (Tetracycline-efflux transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH7_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 6.090e-9
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = -3 
Query: 1360 MQGAVTSLRIIGEGVAAPIFSHTFSAGCTVRFEQAPFFLAAIFSFVSLTV 1509
            +QGAV SLR++GEGVAAP+F+  FSAG +V FE+APFFLA   S VSL V
Sbjct:  485 LQGAVMSLRVVGEGVAAPVFTQVFSAGASVGFEEAPFFLATAISLVSLAV 534
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1528.3625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNH7_ECTSI6.090e-966.00Tetracycline-efflux transporter n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1528contigF-serratus_M_contig1528:179985..184029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size2216
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1528.3625.1prot_F-serratus_M_contig1528.3625.1Fucus serratus malepolypeptideF-serratus_M_contig1528 181960..183860 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929515.8296382-UTR-F-serratus_M_contig1528:179984..1800671622929515.8296382-UTR-F-serratus_M_contig1528:179984..180067Fucus serratus maleUTRF-serratus_M_contig1528 179985..180067 -
1690962888.0664272-UTR-F-serratus_M_contig1528:179984..1800671690962888.0664272-UTR-F-serratus_M_contig1528:179984..180067Fucus serratus maleUTRF-serratus_M_contig1528 179985..180067 -
1622929515.849887-UTR-F-serratus_M_contig1528:180363..1813501622929515.849887-UTR-F-serratus_M_contig1528:180363..181350Fucus serratus maleUTRF-serratus_M_contig1528 180364..181350 -
1690962888.079436-UTR-F-serratus_M_contig1528:180363..1813501690962888.079436-UTR-F-serratus_M_contig1528:180363..181350Fucus serratus maleUTRF-serratus_M_contig1528 180364..181350 -
1622929515.863356-UTR-F-serratus_M_contig1528:181588..1819591622929515.863356-UTR-F-serratus_M_contig1528:181588..181959Fucus serratus maleUTRF-serratus_M_contig1528 181589..181959 -
1690962888.087098-UTR-F-serratus_M_contig1528:181588..1819591690962888.087098-UTR-F-serratus_M_contig1528:181588..181959Fucus serratus maleUTRF-serratus_M_contig1528 181589..181959 -
1622929515.9601705-UTR-F-serratus_M_contig1528:183860..1840291622929515.9601705-UTR-F-serratus_M_contig1528:183860..184029Fucus serratus maleUTRF-serratus_M_contig1528 183861..184029 -
1690962888.141474-UTR-F-serratus_M_contig1528:183860..1840291690962888.141474-UTR-F-serratus_M_contig1528:183860..184029Fucus serratus maleUTRF-serratus_M_contig1528 183861..184029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929515.877264-CDS-F-serratus_M_contig1528:181959..1821671622929515.877264-CDS-F-serratus_M_contig1528:181959..182167Fucus serratus maleCDSF-serratus_M_contig1528 181960..182167 -
1690962888.0942538-CDS-F-serratus_M_contig1528:181959..1821671690962888.0942538-CDS-F-serratus_M_contig1528:181959..182167Fucus serratus maleCDSF-serratus_M_contig1528 181960..182167 -
1622929515.8889413-CDS-F-serratus_M_contig1528:182473..1825501622929515.8889413-CDS-F-serratus_M_contig1528:182473..182550Fucus serratus maleCDSF-serratus_M_contig1528 182474..182550 -
1690962888.1100883-CDS-F-serratus_M_contig1528:182473..1825501690962888.1100883-CDS-F-serratus_M_contig1528:182473..182550Fucus serratus maleCDSF-serratus_M_contig1528 182474..182550 -
1622929515.9012148-CDS-F-serratus_M_contig1528:183027..1831361622929515.9012148-CDS-F-serratus_M_contig1528:183027..183136Fucus serratus maleCDSF-serratus_M_contig1528 183028..183136 -
1690962888.1210387-CDS-F-serratus_M_contig1528:183027..1831361690962888.1210387-CDS-F-serratus_M_contig1528:183027..183136Fucus serratus maleCDSF-serratus_M_contig1528 183028..183136 -
1622929515.9387712-CDS-F-serratus_M_contig1528:183648..1838601622929515.9387712-CDS-F-serratus_M_contig1528:183648..183860Fucus serratus maleCDSF-serratus_M_contig1528 183649..183860 -
1690962888.131947-CDS-F-serratus_M_contig1528:183648..1838601690962888.131947-CDS-F-serratus_M_contig1528:183648..183860Fucus serratus maleCDSF-serratus_M_contig1528 183649..183860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1528.3625.1

>prot_F-serratus_M_contig1528.3625.1 ID=prot_F-serratus_M_contig1528.3625.1|Name=mRNA_F-serratus_M_contig1528.3625.1|organism=Fucus serratus male|type=polypeptide|length=202bp
MNSATLLPLQDDGYEFGMDMTSLQDLITSALPLPRSVTGEFWRTYVTRNE
DMIYPLELFAALAIQSHGLSREKAIFFFDMFDFGGREEISYDEVAICIST
VVGAFSKVSNRCCLLDEARVDKLADDVYVTAARDAGSLLSRSDFLDWLGK
SLKINLSGNVTIEDAAKALGVWSNQDQEDEQTGPSSGPERDSSKMSTSGG
G*
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mRNA from alignment at F-serratus_M_contig1528:179985..184029-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1528.3625.1 ID=mRNA_F-serratus_M_contig1528.3625.1|Name=mRNA_F-serratus_M_contig1528.3625.1|organism=Fucus serratus male|type=mRNA|length=4045bp|location=Sequence derived from alignment at F-serratus_M_contig1528:179985..184029- (Fucus serratus male)
TCGATGCATGTTTTCATGCCACCCCTCACGATGTAACCTCCTGGGATCTG
CAACACGTGAAAACACTCCACGCCAAGTTTAGGGTCAGTCGATGGAAAGA
TAACAATGTACCAAGTTGTTATTGTTTGTTGGCTCGTCCTCCATCGATAC
TTTGATTTCCGTCAGGGGCATGAACTCGGCGACTCTGCTCCCCCTACAGG
ATGATGGTTACGAATTTGGTATGGACATGACATCGCTGCAAGATCTCATT
ACCTCGGCGCTACCACTTCCTCGGAGTGTCACGGGGGAATTTTGGAGGAC
GTACGTCACTCGCAACGAAGATATGATTTACCCTCTGGAGCTCTTCGCTG
CGCTGGCGATTCAAAGCCACGGTCTCTCCAGGTACATGCGGGGTGTTTAT
CCGGCGTGGACGCGGAAATTGCACCGATTGTTTCTTTATTAATAGTATAT
GTACAATACACATCCAAGAGCGAATATAATAGCCTGCGGGTGCACAACGT
CTGGTCGAACAGACTATGCTGAAAAAAAACAACTATTGACGAGAGTGTTC
GAAACCGCAAGTATAAGACGATAAAATAATTACCAGATATTGTAAAACCG
CGAGATAATTGGGATGGCTATGGAACTACCCTCCCCCGCCGCGCGCCCAA
CGTTGACTGCAGTTTAATGCCAGTGTGTCTTGTTTATAAAATTACCTACT
GGTACTGTAATACTGTAGATCAGTCTATACGATCACCCCCCCCCCCCCCC
CCGATATAAACGAAACAAAACTCCCCCAAAGAGATACCTTGTGCGTTTGC
CTGGGCGGAGTTTGTGAACGCGGGTGGAAGCCATGCTTTCGAAGCTTTCT
CTTGCGAGCTTATCGTGGCCACGACCGGTGCGTGCGCTGCCAGGGAGAAG
GCGATCTTCTTTTTTGACATGTTCGACTTCGGAGGGCGCGAGGAGATTTC
GTACGATGAGGTGGCCATCTGTATCTCGACTGTCGTGGGGGCGTTTTCCA
AGGTGGCATCGGTTTGGGTGTTGTTGACCACGTCGCGGTTGTTCGCATCG
TAGGCCTTTTTGAAGGGTAGCATTTGCCCCCGTGCAAACTCGTGATATCG
TATATTATGTCGTATTGATCAATATAATAGTGTGCAAGATGTCCAGAGAA
AAACGGTTTTGTTTAGCGCTCTAGATGCGCGCAGGATCGCAACGTTAACC
AGGGCACTCGGGGTCGCTGAGAGAATTCGCGACTGCCACTCCGCCCCATC
AGAGGAGACGGTTCTATACTCATCTAGAAGGAAACAGCGATACGCATAAC
ATATAAAAGCGGTATCACAAGTGTCGTTGATTACGAATTAGTAATAGTAA
CATCTGAGATGCACGTTTCAACTTTATTGTTATTTTGGTTCATGGTTCTT
GGAACCTTTCGCTAGGCATTTTGTTTTGGCGGGGGAGGGGTAATCATTCA
TTCCTTTACCCCCGTCGCTGCTGCACCAGGTCTCGAACCGTTGCTGCCTA
TTGGACGAAGCGCGAGTGGACAAGCTCGCCGATGACGTCTATGTCACCGC
TGCTAGGTGCAATGACATGTCTCATAACGATAGGCTCAAACCTGAAACGA
CTCGACATACATAAAATACTTCTCAAAGTCCTCCTCTTGTCAGTAGTAAG
TACAATATCTACAAAGGACCGAATTGCGACGGTGCAGGCATGCTTGCTCG
CGATTTCCCTGTCCATGGCGATGAGCATCCGAAGCCTCCCTTCATCGTGA
TGCAATTTCAAGTGCCACAATTCGCAGCCGCAGTTCGACACGCCGAAACG
ACATTTTCAACACACTTGAAAAAAGTCCGTTCATGCTTAGTCTAAAAAAT
ACGCGCGCGCAGGGACGCGGGTTCACTTCTTTCGAGATCCGACTTCCTCG
ACTGGCTGGGGAAAAGCCTGAAGATCAACCTATCCGGGAACGTGACCATA
GAGGACGCCGCAAAAGCCTTAGGAGTCTGGTCAAACCAAGATCAAGAAGA
TGAGCAAACAGGGCCCAGCTCCGGTCCGGAGAGAGACAGCTCAAAAATGT
CAACATCGGGAGGGGGGTAGGACGTGGGTCCAGTATATGCGATTGGCCTT
GCTCCATATGTTCTACCTGATTCCTTCTAATTCTAAAGCCTTCGATATGG
TCACGGTCTTCTCGTGCGGGGGTGCACGAGAATCGTGCATCTCGACGGCT
CGGTGCTACAAAAAAATCATGACGGAGTTGAAAGCACCAAAATCGTTCGT
TTTCCACCACAACAGTGTACCCGGCGTGCTTAACACAACACGAGATACAA
AAATAGCACACGTCTCGGAGAGGATCTGTCTCCTCAATTGTCCTCACTCA
AACGCAGGTGCTGGCGGAGACAACAGTGGCTGAGTGATGGCCCCTTCCCC
GTCCTCAAAGAGCGATCCGTTGCGCAAGAGCTCCTCCCCGCGTAAGAACG
CCTCGCTCTCCGCAGCCCTACCGTTGTTAAACCCGTCCGACGTTCGAATG
GTGACGGCCACGCCGAGGCCAAGGAGGCGCGCGGTGTCTTCATCTGCATC
TTCCGAATCCGATTCCTCTGCTTTCATTTCCGCCGCCTCGTCCTTGTTGC
TCGCTGCCGTCTTTCCGCCGGACGCATCCGCGCTTGCGCCGTCGTCCAAC
GTGCGTTGTCGTTTGTCCATCTCCCGCAGCGGCCACCACGTTATCTTGTC
AGAGGTTCAGGATGGGTATGGAGTGGGACGGGATCAGATCGGAGGCGCGC
GGGGGCGCACGTGTGACAATCAAGCGGTAGAAAGTTCGTGAATAATGACA
CAACGAGAGCAAACACGCCCCTTGCGAGGGCGGCGAGGGACGGCTCAAAT
ACGTTTTGCAGTGGTCGCAGCCCGCAAAAACCTCATTTTCCTCACCGTCA
GGCTGACGAAGCTGAAGATTGCGGCCAGGAAAAAGGGCGCCTGTTCAAAC
CTCACCGTGCACCCGGCGGAGAACGTGTGGGAGAATATCGGTGCGGCGAC
CCCTTCGCCGATGATGCGAAGGCTCGTAACCGCTCCCTGCATGCCACGTC
GCGGTGGCCAACATGCGAAACGCGTGGAAGAAGCAGAACATCAAACTTGC
GGGCAAAGCAATCGAAGCGCACGTGTTTGAAGCGCACGGGTCCGAAGAGC
ATTCGTGGATAAGTCAGGACAAGATTCGACATGAGGTACAGCTCTCGTTG
CCCGAGTGGTAAAGTGGATGACCATACCCACTAGTGCGGAAGTCGTGAGT
TCAATTCTCGTCGAAGCAGGATTGTTTTTTGTCTTCCGTGGCGGAAAGCG
TGAGAACGGGAGTGGTCGAAATTCAACCACTGGTTGACGAGTTATAAGAC
TCCTAAATTTGCACCGCGATGACAAATCGTAAGGCGAGAACCGGGGAGAG
ATGGTAAGATCCTTCGTGACCTCAGACATGATAGAGATGGCAACGTTGCA
GTAGGTGGGATTGGTAATCTATTAATAGCACGTTGAGGCCCATCGGCCAT
AAGTGAGACCCAAAATAACAAAAGGGCGCGTCAGCGAAACACGGGCAGTT
CCTCCACGAAGCGGCACGTCTCTTCATTAATCTTTAGCAGGCAGATAGCT
TACCACGCAGCATTATCGCCTTCTACCGGAGGGGTACAGCCGGAAATATG
ACTTGTGCTCCGCAGGGTAAGGGATCCCGGAACAATGCACGTACACACCA
AATGAGTCAGTTTTTCTATCAGATCCTTCGTACGAAGTGTAGCACAGCGG
TTTCACCCCAGTGCATTCTAACCTCGGCTAACCTCGACTAACGTCGGAAG
CGCTGCGTCAAGGGACGTTGATCTGCTCCATCTGTACGCCGGTAAGCACC
TACCATACACCGTAACTGTACCCCTTCAGAGCAGTAAACACGGAGAGAGA
AAGAGAGTCAGCCCCGGACCTAAACTGGAATCCTCTTTTCTCCTCGATGA
AAACACCTGTAGGCTCCCCTGGCGGTCCTTAGCGACAAACGTGGCCATGA
TAGCCTGCAGGCAGGGCTCCGTAATGTTTTGCAGCGCCCCGAACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1528:179985..184029-

>mRNA_F-serratus_M_contig1528.3625.1 ID=mRNA_F-serratus_M_contig1528.3625.1|Name=mRNA_F-serratus_M_contig1528.3625.1|organism=Fucus serratus male|type=CDS|length=1212bp|location=Sequence derived from alignment at F-serratus_M_contig1528:179985..184029- (Fucus serratus male)
ATGAACTCGGCGACTCTGCTCCCCCTACAGGATGATGGTTACGAATTTGG
TATGGACATGACATCGCTGCAAGATCTCATTACCTCGGCGCTACCACTTC
CTCGGAGTGTCACGGGGGAATTTTGGAGGACGTACGTCACTCGCAACGAA
GATATGATTTACCCTCTGGAGCTCTTCGCTGCGCTGGCGATTCAAAGCCA
CGGTCTCTCCAGATGAACTCGGCGACTCTGCTCCCCCTACAGGATGATGG
TTACGAATTTGGTATGGACATGACATCGCTGCAAGATCTCATTACCTCGG
CGCTACCACTTCCTCGGAGTGTCACGGGGGAATTTTGGAGGACGTACGTC
ACTCGCAACGAAGATATGATTTACCCTCTGGAGCTCTTCGCTGCGCTGGC
GATTCAAAGCCACGGTCTCTCCAGGGAGAAGGCGATCTTCTTTTTTGACA
TGTTCGACTTCGGAGGGCGCGAGGAGATTTCGTACGATGAGGTGGCCATC
TGTATCTCGACTGTCGTGGGGGCGTTTTCCAAGGGAGAAGGCGATCTTCT
TTTTTGACATGTTCGACTTCGGAGGGCGCGAGGAGATTTCGTACGATGAG
GTGGCCATCTGTATCTCGACTGTCGTGGGGGCGTTTTCCAAGGTCTCGAA
CCGTTGCTGCCTATTGGACGAAGCGCGAGTGGACAAGCTCGCCGATGACG
TCTATGTCACCGCTGCTAGGTCTCGAACCGTTGCTGCCTATTGGACGAAG
CGCGAGTGGACAAGCTCGCCGATGACGTCTATGTCACCGCTGCTAGGGAC
GCGGGTTCACTTCTTTCGAGATCCGACTTCCTCGACTGGCTGGGGAAAAG
CCTGAAGATCAACCTATCCGGGAACGTGACCATAGAGGACGCCGCAAAAG
CCTTAGGAGTCTGGTCAAACCAAGATCAAGAAGATGAGCAAACAGGGCCC
AGCTCCGGTCCGGAGAGAGACAGCTCAAAAATGTCAACATCGGGAGGGGG
GTAGGGACGCGGGTTCACTTCTTTCGAGATCCGACTTCCTCGACTGGCTG
GGGAAAAGCCTGAAGATCAACCTATCCGGGAACGTGACCATAGAGGACGC
CGCAAAAGCCTTAGGAGTCTGGTCAAACCAAGATCAAGAAGATGAGCAAA
CAGGGCCCAGCTCCGGTCCGGAGAGAGACAGCTCAAAAATGTCAACATCG
GGAGGGGGGTAG
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