mRNA_F-serratus_M_contig1528.3618.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1528.3618.1
Unique NamemRNA_F-serratus_M_contig1528.3618.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1528.3618.1 vs. uniprot
Match: D7FNH3_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH3_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.140e-21
Identity = 56/119 (47.06%), Postives = 73/119 (61.34%), Query Frame = 1 
Query:  370 TSKDTLVNIFMAWAAKTELRLGFCDAKATKHHRRYMFRRGMDLWKAYHPQVVATRMVEVYAGQFDLLSRISVRYAFNALRSHAKCTRVAARSRSVFENLAMRLEYAGKMGLRLAFRRWV 726
            TS  TL + F+AWA +TE RL   DAKA KH+R    R GM  W+ +    +  RM E +AG+F + SRI VR+AF ALR+HAK  R+ +R+RS    L   LE  G+  LR A+RRW 
Sbjct:  779 TSNRTLADSFLAWAERTEGRLRHRDAKAAKHYRLDRLRHGMSAWERHRATFLGGRMAEAFAGRFGMSSRIFVRFAFEALRAHAKGARIVSRNRSAMGKLVSHLERFGRARLRQAWRRWT 897
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1528.3618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNH3_ECTSI2.140e-2147.06Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1528contigF-serratus_M_contig1528:132786..133775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue1.5e-21
Seed eggNOG ortholog2880.D7FNH3
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size990
Cds size990
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929513.009012-CDS-F-serratus_M_contig1528:132785..1337751622929513.009012-CDS-F-serratus_M_contig1528:132785..133775Fucus serratus maleCDSF-serratus_M_contig1528 132786..133775 +
1690962886.775304-CDS-F-serratus_M_contig1528:132785..1337751690962886.775304-CDS-F-serratus_M_contig1528:132785..133775Fucus serratus maleCDSF-serratus_M_contig1528 132786..133775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1528.3618.1prot_F-serratus_M_contig1528.3618.1Fucus serratus malepolypeptideF-serratus_M_contig1528 132786..133775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1528.3618.1

>prot_F-serratus_M_contig1528.3618.1 ID=prot_F-serratus_M_contig1528.3618.1|Name=mRNA_F-serratus_M_contig1528.3618.1|organism=Fucus serratus male|type=polypeptide|length=330bp
MDAESSFTAMPNDRKEQAHGHAVRESPSPCEPIHSELDEADKDKPSGEPS
IPSVSMNIEVRNSKDVCNNAQSFGTDDEEPLWCSATNEYQTQNMHSAPRM
GKITQKDTDINIDDRHEEGLRCGTSKDTLVNIFMAWAAKTELRLGFCDAK
ATKHHRRYMFRRGMDLWKAYHPQVVATRMVEVYAGQFDLLSRISVRYAFN
ALRSHAKCTRVAARSRSVFENLAMRLEYAGKMGLRLAFRRWVRSMGESGS
GDKEASSRFDGPLAQGRMNDIWQTRRAKSKLAGSLAIPFTASVASKTGVL
AQPMEGRQRSHFVATKMKDNSWEQLAREGG
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mRNA from alignment at F-serratus_M_contig1528:132786..133775+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1528.3618.1 ID=mRNA_F-serratus_M_contig1528.3618.1|Name=mRNA_F-serratus_M_contig1528.3618.1|organism=Fucus serratus male|type=mRNA|length=990bp|location=Sequence derived from alignment at F-serratus_M_contig1528:132786..133775+ (Fucus serratus male)
ATGGACGCTGAATCCTCGTTCACCGCGATGCCCAATGATAGGAAAGAGCA
GGCGCATGGCCATGCCGTTCGGGAATCACCCTCTCCCTGTGAACCAATAC
ATAGCGAGTTGGACGAGGCAGACAAAGACAAACCTTCAGGGGAACCTTCG
ATTCCATCGGTGAGCATGAACATAGAGGTTAGAAATTCGAAGGATGTATG
CAACAACGCCCAATCCTTCGGGACTGATGACGAAGAACCGTTATGGTGCA
GCGCAACCAACGAATACCAGACTCAAAACATGCACTCCGCGCCGAGGATG
GGCAAAATAACACAGAAAGACACCGACATAAATATAGATGATAGGCACGA
GGAGGGGCTGAGATGCGGGACATCAAAGGACACGCTTGTAAATATTTTCA
TGGCGTGGGCCGCCAAGACAGAATTAAGGTTGGGCTTCTGCGATGCGAAA
GCCACAAAACATCACCGCCGCTATATGTTCCGAAGAGGAATGGACTTGTG
GAAGGCGTACCATCCACAGGTAGTTGCAACTCGTATGGTGGAAGTGTATG
CCGGGCAGTTCGACCTGTTGTCCAGAATTTCTGTGCGTTACGCGTTCAAC
GCGCTGAGGTCTCATGCGAAATGCACCCGGGTTGCTGCGAGAAGTCGATC
GGTCTTTGAAAACCTTGCAATGCGACTAGAATATGCGGGTAAGATGGGGC
TAAGGCTGGCATTCCGGCGGTGGGTACGATCAATGGGTGAATCAGGATCC
GGGGACAAAGAGGCATCGTCGCGATTTGATGGGCCGTTGGCGCAAGGCCG
GATGAATGATATCTGGCAAACGAGGAGAGCTAAGAGTAAGCTAGCAGGAT
CGCTCGCTATTCCTTTTACGGCTAGCGTTGCCTCGAAAACGGGAGTGTTG
GCCCAACCGATGGAGGGCAGGCAGCGATCGCACTTTGTGGCAACCAAAAT
GAAGGATAACAGCTGGGAGCAATTGGCAAGGGAAGGGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1528:132786..133775+

>mRNA_F-serratus_M_contig1528.3618.1 ID=mRNA_F-serratus_M_contig1528.3618.1|Name=mRNA_F-serratus_M_contig1528.3618.1|organism=Fucus serratus male|type=CDS|length=1980bp|location=Sequence derived from alignment at F-serratus_M_contig1528:132786..133775+ (Fucus serratus male)
ATGGACGCTGAATCCTCGTTCACCGCGATGCCCAATGATAGGAAAGAGCA
GGCGCATGGCCATGCCGTTCGGGAATCACCCTCTCCCTGTGAACCAATAC
ATAGCGAGTTGGACGAGGCAGACAAAGACAAACCTTCAGGGGAACCTTCG
ATTCCATCGGTGAGCATGAACATAGAGGTTAGAAATTCGAAGGATGTATG
CAACAACGCCCAATCCTTCGGGACTGATGACGAAGAACCGTTATGGTGCA
GCGCAACCAACGAATACCAGACTCAAAACATGCACTCCGCGCCGAGGATG
GGCAAAATAACACAGAAAGACACCGACATAAATATAGATGATAGGCACGA
GGAGGGGCTGAGATGCGGGACATCAAAGGACACGCTTGTAAATATTTTCA
TGGCGTGGGCCGCCAAGACAGAATTAAGGTTGGGCTTCTGCGATGCGAAA
GCCACAAAACATCACCGCCGCTATATGTTCCGAAGAGGAATGGACTTGTG
GAAGGCGTACCATCCACAGGTAGTTGCAACTCGTATGGTGGAAGTGTATG
CCGGGCAGTTCGACCTGTTGTCCAGAATTTCTGTGCGTTACGCGTTCAAC
GCGCTGAGGTCTCATGCGAAATGCACCCGGGTTGCTGCGAGAAGTCGATC
GGTCTTTGAAAACCTTGCAATGCGACTAGAATATGCGGGTAAGATGGGGC
TAAGGCTGGCATTCCGGCGGTGGGTACGATCAATGGGTGAATCAGGATCC
GGGGACAAAGAGGCATCGTCGCGATTTGATGGGCCGTTGGCGCAAGGCCG
GATGAATGATATCTGGCAAACGAGGAGAGCTAAGAGTAAGCTAGCAGGAT
CGCTCGCTATTCCTTTTACGGCTAGCGTTGCCTCGAAAACGGGAGTGTTG
GCCCAACCGATGGAGGGCAGGCAGCGATCGCACTTTGTGGCAACCAAAAT
GAAGGATAACAGCTGGGAGCAATTGGCAAGGGAAGGGGGGATGGACGCTG
AATCCTCGTTCACCGCGATGCCCAATGATAGGAAAGAGCAGGCGCATGGC
CATGCCGTTCGGGAATCACCCTCTCCCTGTGAACCAATACATAGCGAGTT
GGACGAGGCAGACAAAGACAAACCTTCAGGGGAACCTTCGATTCCATCGG
TGAGCATGAACATAGAGGTTAGAAATTCGAAGGATGTATGCAACAACGCC
CAATCCTTCGGGACTGATGACGAAGAACCGTTATGGTGCAGCGCAACCAA
CGAATACCAGACTCAAAACATGCACTCCGCGCCGAGGATGGGCAAAATAA
CACAGAAAGACACCGACATAAATATAGATGATAGGCACGAGGAGGGGCTG
AGATGCGGGACATCAAAGGACACGCTTGTAAATATTTTCATGGCGTGGGC
CGCCAAGACAGAATTAAGGTTGGGCTTCTGCGATGCGAAAGCCACAAAAC
ATCACCGCCGCTATATGTTCCGAAGAGGAATGGACTTGTGGAAGGCGTAC
CATCCACAGGTAGTTGCAACTCGTATGGTGGAAGTGTATGCCGGGCAGTT
CGACCTGTTGTCCAGAATTTCTGTGCGTTACGCGTTCAACGCGCTGAGGT
CTCATGCGAAATGCACCCGGGTTGCTGCGAGAAGTCGATCGGTCTTTGAA
AACCTTGCAATGCGACTAGAATATGCGGGTAAGATGGGGCTAAGGCTGGC
ATTCCGGCGGTGGGTACGATCAATGGGTGAATCAGGATCCGGGGACAAAG
AGGCATCGTCGCGATTTGATGGGCCGTTGGCGCAAGGCCGGATGAATGAT
ATCTGGCAAACGAGGAGAGCTAAGAGTAAGCTAGCAGGATCGCTCGCTAT
TCCTTTTACGGCTAGCGTTGCCTCGAAAACGGGAGTGTTGGCCCAACCGA
TGGAGGGCAGGCAGCGATCGCACTTTGTGGCAACCAAAATGAAGGATAAC
AGCTGGGAGCAATTGGCAAGGGAAGGGGGG
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