mRNA_F-serratus_M_contig1528.3616.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1528.3616.1
Unique NamemRNA_F-serratus_M_contig1528.3616.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1528.3616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1528contigF-serratus_M_contig1528:130105..130496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size392
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929512.9012625-UTR-F-serratus_M_contig1528:130104..1301571622929512.9012625-UTR-F-serratus_M_contig1528:130104..130157Fucus serratus maleUTRF-serratus_M_contig1528 130105..130157 +
1690962886.7490928-UTR-F-serratus_M_contig1528:130104..1301571690962886.7490928-UTR-F-serratus_M_contig1528:130104..130157Fucus serratus maleUTRF-serratus_M_contig1528 130105..130157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929512.915637-CDS-F-serratus_M_contig1528:130157..1304961622929512.915637-CDS-F-serratus_M_contig1528:130157..130496Fucus serratus maleCDSF-serratus_M_contig1528 130158..130496 +
1690962886.7575016-CDS-F-serratus_M_contig1528:130157..1304961690962886.7575016-CDS-F-serratus_M_contig1528:130157..130496Fucus serratus maleCDSF-serratus_M_contig1528 130158..130496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1528.3616.1prot_F-serratus_M_contig1528.3616.1Fucus serratus malepolypeptideF-serratus_M_contig1528 130158..130496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1528.3616.1

>prot_F-serratus_M_contig1528.3616.1 ID=prot_F-serratus_M_contig1528.3616.1|Name=mRNA_F-serratus_M_contig1528.3616.1|organism=Fucus serratus male|type=polypeptide|length=113bp
MRAAHAAAKKNKGEDFATINSSVRYVESMSPPALMNHKLTKKPLRDRHER
KFSVTTMKAGRVPRGSIAEKTQAGTKAALQDGATSRFPLPYPGLDVDWPP
KNPLLNLRVRQHN
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mRNA from alignment at F-serratus_M_contig1528:130105..130496+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1528.3616.1 ID=mRNA_F-serratus_M_contig1528.3616.1|Name=mRNA_F-serratus_M_contig1528.3616.1|organism=Fucus serratus male|type=mRNA|length=392bp|location=Sequence derived from alignment at F-serratus_M_contig1528:130105..130496+ (Fucus serratus male)
CAGACCCCTTGTCGTTGGAGAAGAGTCTAGTTGCTCAAAGTGTATAAGAA
ATAATGCGAGCTGCTCATGCTGCTGCCAAAAAAAATAAGGGCGAGGACTT
CGCAACTATAAATAGCTCTGTACGCTACGTCGAGTCCATGAGCCCACCGG
CACTCATGAATCATAAGCTGACAAAGAAACCTCTCAGAGATCGTCACGAG
AGGAAGTTTTCTGTGACAACGATGAAGGCAGGGCGTGTCCCTAGAGGTTC
AATCGCTGAGAAGACGCAAGCAGGTACAAAGGCGGCACTCCAGGACGGTG
CTACATCTCGCTTTCCATTACCGTATCCTGGGTTGGATGTAGATTGGCCG
CCTAAAAACCCCTTGTTGAATTTAAGAGTGCGACAACATAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1528:130105..130496+

>mRNA_F-serratus_M_contig1528.3616.1 ID=mRNA_F-serratus_M_contig1528.3616.1|Name=mRNA_F-serratus_M_contig1528.3616.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig1528:130105..130496+ (Fucus serratus male)
ATGCGAGCTGCTCATGCTGCTGCCAAAAAAAATAAGGGCGAGGACTTCGC
AACTATAAATAGCTCTGTACGCTACGTCGAGTCCATGAGCCCACCGGCAC
TCATGAATCATAAGCTGACAAAGAAACCTCTCAGAGATCGTCACGAGAGG
AAGTTTTCTGTGACAACGATGAAGGCAGGGCGTGTCCCTAGAGGTTCAAT
CGCTGAGAAGACGCAAGCAGGTACAAAGGCGGCACTCCAGGACGGTGCTA
CATCTCGCTTTCCATTACCGTATCCTGGGTTGGATGTAGATTGGCCGCCT
AAAAACCCCTTGTTGAATTTAAGAGTGCGACAACATAACATGCGAGCTGC
TCATGCTGCTGCCAAAAAAAATAAGGGCGAGGACTTCGCAACTATAAATA
GCTCTGTACGCTACGTCGAGTCCATGAGCCCACCGGCACTCATGAATCAT
AAGCTGACAAAGAAACCTCTCAGAGATCGTCACGAGAGGAAGTTTTCTGT
GACAACGATGAAGGCAGGGCGTGTCCCTAGAGGTTCAATCGCTGAGAAGA
CGCAAGCAGGTACAAAGGCGGCACTCCAGGACGGTGCTACATCTCGCTTT
CCATTACCGTATCCTGGGTTGGATGTAGATTGGCCGCCTAAAAACCCCTT
GTTGAATTTAAGAGTGCGACAACATAAC
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