mRNA_F-serratus_M_contig1528.3614.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1528.3614.1
Unique NamemRNA_F-serratus_M_contig1528.3614.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1528.3614.1 vs. uniprot
Match: D7FNH1_ECTSI (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH1_ECTSI)

HSP 1 Score: 420 bits (1079), Expect = 6.840e-144
Identity = 217/248 (87.50%), Postives = 237/248 (95.56%), Query Frame = 1
Query:    1 MASLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKSNKGVHELDGAEKLPHDVIQMLKTQDLGYVSTKRSADERKAAKLRESLHLLDAGPRNKHTVFFDTEEEAKRFDVAEHFDTVPELADRSFNRPRKSTLETAQVLGATTRREMKKVLKKRDASYSELVQRLERAEKIKKAEDHLEAQRKVMNSKGTKRKVKDAQDGQPAVYKWKKERSR 744
            M+SLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKK+  GVH LDGAE LPHDV+Q+LKTQDLGYVST RSADERKAAKLRESLH+L+AGPRNKHT+FFD+E+EAK FDVA+HFDTVPELADR+FNRPRK TLE AQV GAT RR++KKVLKKRDASYSEL+QRLERAEK+KKAE HLEAQRKVMNSKGTKRKV++A+DG+PAVY+WKKERSR
Sbjct:    1 MSSLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKTEGGVHVLDGAETLPHDVVQLLKTQDLGYVSTHRSADERKAAKLRESLHMLEAGPRNKHTIFFDSEKEAKEFDVAKHFDTVPELADRAFNRPRKDTLEKAQVTGATNRRQLKKVLKKRDASYSELMQRLERAEKMKKAEVHLEAQRKVMNSKGTKRKVQEAKDGRPAVYRWKKERSR 248          
BLAST of mRNA_F-serratus_M_contig1528.3614.1 vs. uniprot
Match: A0A836CK24_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK24_9STRA)

HSP 1 Score: 288 bits (736), Expect = 5.480e-92
Identity = 145/248 (58.47%), Postives = 191/248 (77.02%), Query Frame = 1
Query:    1 MASLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKSNKGVHELDGAEKLPHDVIQMLKTQDLGYVSTKRSADERKAAKLRESLHLLDAGPRNKHTVFFDTEEEAKRFDVAEHFDTVPELADRSFNRPRKSTLETAQVLGATTRREMKKVLKKRDASYSELVQRLERAEKIKKAEDHLEAQRKVMNSKGTKRKVKDAQDGQPAVYKWKKERSR 744
            M+SLRNAVKR  HKERAQPASR K GLLEKH DYVLRAR+Y  KRDR+ AL+LKA+++NPDEFYF MH+ K+ +GVH+++G+  L H+   MLKTQD+ Y+  KR+ D +KA +L+  LH+LDA P+N HTVF   + + + FD AE+FDT PELA R+FNRPR +TLE+ QVLGA +R ++KK LK+RDA+Y E+  R ERA K+ +A  HL AQR +M ++GT  KVK A+ GQP VYKWK++R++
Sbjct:    1 MSSLRNAVKRKTHKERAQPASRSKFGLLEKHSDYVLRARDYNAKRDRLNALRLKASLRNPDEFYFGMHKAKTKEGVHQVEGSSSLDHETAHMLKTQDMAYIHMKRAVDIKKAERLKAGLHMLDAPPQNTHTVFVKNKRQRRAFDAAEYFDTAPELAGRTFNRPRMATLESKQVLGAESRADLKKALKQRDAAYQEVEAREERARKMTRAAAHLAAQRALMTARGTVTKVKGAEKGQPPVYKWKRQRAK 248          
BLAST of mRNA_F-serratus_M_contig1528.3614.1 vs. uniprot
Match: A0A8K1CCZ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCZ2_PYTOL)

HSP 1 Score: 256 bits (653), Expect = 1.660e-79
Identity = 139/248 (56.05%), Postives = 179/248 (72.18%), Query Frame = 1
Query:    7 SLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKSNKGVH--ELDGAEKLPHDVIQMLKTQDLGYVSTKRSADERKAAKLRESLHLLDAGPRNKHTVFFDTEEEAKRFDVAEHFDTVPELADRSFNRPRKSTLETAQVLGATTRREMKKVLKKRDASYSELVQRLERAEKIKKAEDHLEAQRKVMNSKGTKRKVKDAQDGQPAVYKWKKERSR 744
            SLRN VKR EHKER Q   R+KLGLLEKHKDYVLRAR+Y KK+DR++ +KLKAA +NPDEFYF M+  ++  GVH  E + +EKL  + +++LKTQDL Y+  KR+ D RKA KL + LH +DA   NKHTVF D+ E+   FDVA HFDT PELADR+FNR RK TL+T  +   T +++++ + K+RDA Y EL  RL RA KI++  D L+ +RKV  +KG KRKV+D    +P VYKWKKER +
Sbjct:    2 SLRNVVKRREHKERGQLQERKKLGLLEKHKDYVLRARDYNKKQDRLRTMKLKAAFRNPDEFYFKMNTTRTEDGVHVSENNHSEKLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLTQGLHFIDAPKNNKHTVFVDSSEDLNTFDVATHFDTAPELADRAFNRLRKETLKTTTIQATTDKKQLRALTKERDAVYRELNDRLIRATKIQQMSDRLDLERKVQ-AKGKKRKVQDGDSSRPPVYKWKKERQK 248          
BLAST of mRNA_F-serratus_M_contig1528.3614.1 vs. uniprot
Match: K3WAT9_GLOUD (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAT9_GLOUD)

HSP 1 Score: 244 bits (623), Expect = 5.590e-75
Identity = 136/251 (54.18%), Postives = 181/251 (72.11%), Query Frame = 1
Query:    1 MASLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKSNKGVHEL--DGAEKLPHDVIQMLKTQDLGYVSTKRSADERKAAKLRESLHLLDA-GPRNKHTVFFDTEEEAKRFDVAEHFDTVPELADRSFNRPRKSTLETAQVLGATTRREMKKVLKKRDASYSELVQRLERAEKIKKAEDHLEAQRKVMNSKGTKRKVKDAQDGQPAVYKWKKERSR 744
            M+SLRN VKR EHKER Q   R+KLGLLEKHKDYV RAR+Y KK+D ++AL +KAA +NPDEFYF M+  ++  GVH    +  ++L  + +++LKTQDL Y+  KR+ D RKA KL E LH +DA G  NKH VF D+++E + FDVA+HFDTVPE+ADR+FNR RK TL+T  +     ++ +KK+  +RDA Y EL  RL+RA  I +    L+ +RKV  +KG K K+KDA+DGQPAVY+WKK+R +
Sbjct:    1 MSSLRNVVKRREHKERGQLRERKKLGLLEKHKDYVKRARDYNKKQDHLKALAVKAAFRNPDEFYFRMNSTRTEDGVHVSTHNHHKQLSAEALKVLKTQDLAYLHMKRAVDLRKAEKLNEGLHFIDAAGKDNKHVVFVDSKDEVESFDVAKHFDTVPEIADRAFNRLRKDTLKTVSLPAVQDKKTLKKLGIERDAVYRELNDRLQRASTIDRMRAKLDLERKVQ-AKGKKMKIKDAEDGQPAVYRWKKQRQK 250          
BLAST of mRNA_F-serratus_M_contig1528.3614.1 vs. uniprot
Match: A0A5D6XJY8_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJY8_9STRA)

HSP 1 Score: 240 bits (612), Expect = 2.480e-73
Identity = 133/249 (53.41%), Postives = 174/249 (69.88%), Query Frame = 1
Query:    7 SLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKSNKGVH-----ELDGAEKLPHDVIQMLKTQDLGYVSTKRSADERKAAKLRESLHLLDAGPRNKHTVFFDTEEEAKRFDVAEHFDTVPELADRSFNRPRKSTLETAQVLGATTRREMKKVLKKRDASYSELVQRLERAEKIKKAEDHLEAQRKVMNSKGTKRKVKDAQDGQPAVYKWKKER 738
            SLRN VKR EHKER QP  R+KLGLLEKHKDYV RAR+Y  K+DR++ ++LKAA +NPDEFYF M+  ++  GVH      LDG + L  D +++LKTQD+ Y+  KR+ D RKA KL   LH +DA   NKH VF D+E +  +FDVA HFDT PELADR+FNR R   L+T  +   ++ +E+KK  ++RD  Y EL  RLERA  + +    L+ +RKV  +KG K K+KDA++GQPAVY+WKK+R
Sbjct:    2 SLRNVVKRREHKERGQPQERKKLGLLEKHKDYVKRARDYNSKQDRLRTMQLKAAFRNPDEFYFRMNATRTEGGVHVSDNNRLDG-KALTADALKVLKTQDVAYLHLKRAVDMRKAEKLNAGLHFIDAPTANKHVVFVDSEAQLAKFDVAAHFDTAPELADRAFNRVRMDALKTLALPAVSSAKEIKKRNRERDGVYRELSDRLERAATLDRMRAKLDLERKVQ-AKGKKMKIKDAENGQPAVYRWKKQR 248          
BLAST of mRNA_F-serratus_M_contig1528.3614.1 vs. uniprot
Match: A0A4D9DA46_9STRA (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA46_9STRA)

HSP 1 Score: 236 bits (602), Expect = 8.040e-72
Identity = 132/249 (53.01%), Postives = 178/249 (71.49%), Query Frame = 1
Query:    4 ASLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKSNKGVHELDGAE-KLPHDVIQMLKTQDLGYVSTKRSADERKAAKLRESLHLLDAGPRNKHTVFFDTEEEAKRFDVAEHFDTVPELADRSFNRPRKSTLET-AQVLGATTRREMKKVLKKRDASYSELVQRLERAEKIKKAEDHLEAQRKVMNSKGTKRKVKDAQDGQPAVYKWKKERSR 744
            ASLRNA+ R  +KER+QPA+R+K GLLEKHKDYV RA +Y +K   + +L+ KAA +NPDEFYFAM + ++ +GVH +  AE  LPHD I +LKTQD+ YV+ KR+ D +KA KL+  LH L     NKHTVF DTE E + FD A+HF T P L  R+FNRP+  TLET   VLG     E+KKV K R+ +Y+EL +RL+R+   K+  +H++ ++ VM  KG KRKV++A+DG+PAV+KWK+ER +
Sbjct:    4 ASLRNAIPRKTNKERSQPAARKKFGLLEKHKDYVQRANDYKRKSKALASLREKAAFRNPDEFYFAMTKGQTKEGVHRVRPAEASLPHDHIALLKTQDMRYVTMKRALDVKKAEKLQAGLHFLTEEAANKHTVFVDTEAEVETFDPAKHFGTDPALVTRAFNRPKLETLETPGAVLGVANVGELKKVRKAREKAYTELGERLKRSLSFKEVLEHMQVEKNVMG-KGRKRKVQEAEDGKPAVFKWKRERRK 251          
BLAST of mRNA_F-serratus_M_contig1528.3614.1 vs. uniprot
Match: A0A3R7K0P1_9STRA (U3 small nucleolar RNA-associated protein 11 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0P1_9STRA)

HSP 1 Score: 232 bits (592), Expect = 4.750e-70
Identity = 134/252 (53.17%), Postives = 178/252 (70.63%), Query Frame = 1
Query:    1 MASLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKSNKGVH--ELDGAEKLPHDVIQMLKTQDLGYVSTKRSADERKAAKLRESLHLLDAGPRNKHTVFFDTEEEAKRFDVAEHFDTVPELADRSFNRPRKSTLETAQV--LGATTRREMKKVLKKRDASYSELVQRLERAEKIKKAEDHLEAQRKVMNSKGTKRKVKDAQDGQPAVYKWKKERSR 744
            M+SLRN VKR EHKER Q   RRKLGLLEKHKDYV RA++Y +K+  ++ L+LKA+M+NPDEFY+ M   K+  GVH    + A++L  + ++ LKTQDL Y+  KR+ D RKA KL   LH +D    NKHTVF D +++  +FDVAEHFDT PELADR+FNR RK+ LET ++  L A  +++ K  ++K DA Y EL  RLERA+KI +    L+ +RKV  +KG K KVK A+DG PAVY+WK++R +
Sbjct:   22 MSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVKRAKDYNQKQKHLRNLQLKASMRNPDEFYYKMIHGKTEGGVHISTHNHAKQLNAEALRTLKTQDLAYLHMKRAVDLRKAEKLNRGLHFIDTPKNNKHTVFVDEDDDVNKFDVAEHFDTAPELADRAFNRLRKADLETMELPDLAADPKQKYKMQVEK-DAMYRELRDRLERAKKIGRMSAKLDLERKVQ-AKGKKMKVKGAEDGMPAVYRWKQQRQK 271          
BLAST of mRNA_F-serratus_M_contig1528.3614.1 vs. uniprot
Match: A0A7S2W8G3_9STRA (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8G3_9STRA)

HSP 1 Score: 231 bits (590), Expect = 6.260e-70
Identity = 127/259 (49.03%), Postives = 181/259 (69.88%), Query Frame = 1
Query:    1 MASLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKSNKGVHEL---DGAEKLPHDVIQMLKTQDLGYVSTKRSADERKAAKLRESLHLLDAGPRNKHTVFFDTEEEAKRFDVAEHFDTVPELADRSFNRPRKSTLE--------TAQVLGATTRREMKKVLKKRDASYSELVQRLERAEKIKKAEDHLEAQRKVMNSKGTKRKVKDAQDGQPAVYKWKKERSR 744
            MASLRNA+ R  H+ER+Q ASR  LGLLEK KDYV RAR++ +K  +++ L+ KA  +NPDEFYF M  +K+  GVH     DGA+KL HD I ++K+QDLGY+S K++ D+RK+ +L+  LH+L   P N+HTVF D  ++ + FD AEHFDT+PELA R+FNRPR+   E        +  V+ +T+ ++ KK++K +D +Y +L +RLER+EK++K     E ++KVM  KG KRKV+ +  G P VYKWK++R+R
Sbjct:    1 MASLRNALPRRTHRERSQVASRAHLGLLEKKKDYVERARDFQRKTGKIKNLRKKARERNPDEFYFGMVNQKTKDGVHVAERNDGADKLSHDDILLMKSQDLGYLSMKKAVDDRKSERLQSGLHMLLDKPLNQHTVFLDKSKDVETFDAAEHFDTMPELAGRAFNRPRRKAFEADKEGSIASTPVMTSTSSKQYKKIMKSKDKAYEDLAERLERSEKLRKLIQRKEVEKKVMG-KGRKRKVEGSSSGAPPVYKWKRKRAR 258          
BLAST of mRNA_F-serratus_M_contig1528.3614.1 vs. uniprot
Match: H3G9P5_PHYRM (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9P5_PHYRM)

HSP 1 Score: 230 bits (587), Expect = 1.360e-69
Identity = 132/252 (52.38%), Postives = 175/252 (69.44%), Query Frame = 1
Query:    1 MASLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKSNKGVHEL--DGAEKLPHDVIQMLKTQDLGYVSTKRSADERKAAKLRESLHLLDAGPRNKHTVFFDTEEEAKRFDVAEHFDTVPELADRSFNRPRKSTLETAQV--LGATTRREMKKVLKKRDASYSELVQRLERAEKIKKAEDHLEAQRKVMNSKGTKRKVKDAQDGQPAVYKWKKERSR 744
            M+SLRN VKR EHKER Q   RRKLGLLEKHKDYV RAR+Y +K+ R+Q LKLKAA++NPDEFY  M + +++KGVH    +  +++  + ++ LKTQDL Y+  KR+ D RKA KL   LH +DA   NKHTVF D  E+   FDVA HFDT PEL DR+FNR RK+ L+T  +  L A  +++ K  ++K DA Y EL  RL+RA KI +    L+ +RKV  +KG K KVKD ++G PA+Y+WK++R +
Sbjct:    1 MSSLRNVVKRREHKERGQLRERRKLGLLEKHKDYVKRARDYNRKQKRLQTLKLKAALRNPDEFYHKMAQTQTDKGVHSSTHNHLQQMDSEALRSLKTQDLAYLHMKRAMDLRKAEKLNRGLHFVDAPKDNKHTVFVDDSEQVDTFDVASHFDTAPELVDRAFNRIRKAELQTITLPDLAANPKQKHKMQVEK-DAMYRELKDRLDRANKIGQMSSKLDLERKVQ-AKGKKVKVKDGENGMPAIYRWKQQRQK 250          
BLAST of mRNA_F-serratus_M_contig1528.3614.1 vs. uniprot
Match: A0A0P1B0R4_PLAHL (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0R4_PLAHL)

HSP 1 Score: 227 bits (578), Expect = 3.010e-68
Identity = 131/251 (52.19%), Postives = 175/251 (69.72%), Query Frame = 1
Query:    1 MASLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQALKLKAAMKNPDEFYFAMHRKKSNKGVH--ELDGAEKLPHDVIQMLKTQDLGYVSTKRSADERKAAKLRESLHLLDAGPRNKHTVFFDTEEEAKRFDVAEHFDTVPELADRSFNRPRKSTLETAQVLG-ATTRREMKKVLKKRDASYSELVQRLERAEKIKKAEDHLEAQRKVMNSKGTKRKVKDAQDGQPAVYKWKKERSR 744
            M+SLRN VKR EHKER Q   RRKLGLLEKHKDYV RA++Y  K+ R++ L+LKAA++NPDEFY  MH  K+  GVH    +  + L  + ++ LKTQDL Y+  KR+ D RKA +L   LH +DA   NKHTVF D +E+ + FDVA++FDTVPELADR+FNR R+  LE  ++   A + ++  K+  +RDA Y EL  RL RA+KI +    L+ +RKV  +KG KRKVK A++G PAVY+WK++R +
Sbjct:    1 MSSLRNVVKRREHKERGQLRDRRKLGLLEKHKDYVKRAQDYNSKQKRLKMLQLKAALRNPDEFYHRMHNNKTEGGVHISTHNHLKSLSTEALRTLKTQDLAYLHLKRAVDLRKAERLNRGLHFVDAPKDNKHTVFVDDKEQVENFDVAQYFDTVPELADRAFNRIRRRDLEMVELPDMAASPKQKYKMQVERDALYRELRDRLTRAKKIGQMSAKLDLERKVQ-AKGRKRKVKAAENGMPAVYRWKQQRQK 250          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1528.3614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNH1_ECTSI6.840e-14487.50U3 small nucleolar RNA-associated protein 11 n=2 T... [more]
A0A836CK24_9STRA5.480e-9258.47U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A8K1CCZ2_PYTOL1.660e-7956.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WAT9_GLOUD5.590e-7554.18U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A5D6XJY8_9STRA2.480e-7353.41U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A4D9DA46_9STRA8.040e-7253.01U3 small nucleolar RNA-associated protein 11 n=2 T... [more]
A0A3R7K0P1_9STRA4.750e-7053.17U3 small nucleolar RNA-associated protein 11 n=4 T... [more]
A0A7S2W8G3_9STRA6.260e-7049.03U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
H3G9P5_PHYRM1.360e-6952.38U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A0P1B0R4_PLAHL3.010e-6852.19U3 small nucleolar RNA-associated protein 11 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1528contigF-serratus_M_contig1528:119102..122816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score420.6
Seed ortholog evalue5e-115
Seed eggNOG ortholog2880.D7FNH1
Preferred nameUTP11L
KEGG koko:K14685,ko:K14769
KEGG TC2.A.100.1
KEGG Pathwayko04216,ko04978,map04216,map04978
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0010942,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA processing
EggNOG OGsCOG5223@1,KOG3237@2759
Ec32 ortholog descriptionSmall-subunit processome, Utp11
Ec32 orthologEc-01_005480.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03009
Exons6
Model size1366
Cds size747
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929514.7208824-CDS-F-serratus_M_contig1528:119101..1192041622929514.7208824-CDS-F-serratus_M_contig1528:119101..119204Fucus serratus maleCDSF-serratus_M_contig1528 119102..119204 +
1690962887.610225-CDS-F-serratus_M_contig1528:119101..1192041690962887.610225-CDS-F-serratus_M_contig1528:119101..119204Fucus serratus maleCDSF-serratus_M_contig1528 119102..119204 +
1622929514.734241-CDS-F-serratus_M_contig1528:120164..1203341622929514.734241-CDS-F-serratus_M_contig1528:120164..120334Fucus serratus maleCDSF-serratus_M_contig1528 120165..120334 +
1690962887.62033-CDS-F-serratus_M_contig1528:120164..1203341690962887.62033-CDS-F-serratus_M_contig1528:120164..120334Fucus serratus maleCDSF-serratus_M_contig1528 120165..120334 +
1622929514.7503111-CDS-F-serratus_M_contig1528:120642..1207941622929514.7503111-CDS-F-serratus_M_contig1528:120642..120794Fucus serratus maleCDSF-serratus_M_contig1528 120643..120794 +
1690962887.627703-CDS-F-serratus_M_contig1528:120642..1207941690962887.627703-CDS-F-serratus_M_contig1528:120642..120794Fucus serratus maleCDSF-serratus_M_contig1528 120643..120794 +
1622929514.767274-CDS-F-serratus_M_contig1528:121048..1211391622929514.767274-CDS-F-serratus_M_contig1528:121048..121139Fucus serratus maleCDSF-serratus_M_contig1528 121049..121139 +
1690962887.6349726-CDS-F-serratus_M_contig1528:121048..1211391690962887.6349726-CDS-F-serratus_M_contig1528:121048..121139Fucus serratus maleCDSF-serratus_M_contig1528 121049..121139 +
1622929514.8011234-CDS-F-serratus_M_contig1528:121505..1215951622929514.8011234-CDS-F-serratus_M_contig1528:121505..121595Fucus serratus maleCDSF-serratus_M_contig1528 121506..121595 +
1690962887.6421373-CDS-F-serratus_M_contig1528:121505..1215951690962887.6421373-CDS-F-serratus_M_contig1528:121505..121595Fucus serratus maleCDSF-serratus_M_contig1528 121506..121595 +
1622929514.817065-CDS-F-serratus_M_contig1528:122056..1221971622929514.817065-CDS-F-serratus_M_contig1528:122056..122197Fucus serratus maleCDSF-serratus_M_contig1528 122057..122197 +
1690962887.649752-CDS-F-serratus_M_contig1528:122056..1221971690962887.649752-CDS-F-serratus_M_contig1528:122056..122197Fucus serratus maleCDSF-serratus_M_contig1528 122057..122197 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929514.8355398-UTR-F-serratus_M_contig1528:122197..1228161622929514.8355398-UTR-F-serratus_M_contig1528:122197..122816Fucus serratus maleUTRF-serratus_M_contig1528 122198..122816 +
1690962887.6576364-UTR-F-serratus_M_contig1528:122197..1228161690962887.6576364-UTR-F-serratus_M_contig1528:122197..122816Fucus serratus maleUTRF-serratus_M_contig1528 122198..122816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1528.3614.1prot_F-serratus_M_contig1528.3614.1Fucus serratus malepolypeptideF-serratus_M_contig1528 119102..122197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1528.3614.1

>prot_F-serratus_M_contig1528.3614.1 ID=prot_F-serratus_M_contig1528.3614.1|Name=mRNA_F-serratus_M_contig1528.3614.1|organism=Fucus serratus male|type=polypeptide|length=249bp
MASLRNAVKRVEHKERAQPASRRKLGLLEKHKDYVLRARNYGKKRDRMQA
LKLKAAMKNPDEFYFAMHRKKSNKGVHELDGAEKLPHDVIQMLKTQDLGY
VSTKRSADERKAAKLRESLHLLDAGPRNKHTVFFDTEEEAKRFDVAEHFD
TVPELADRSFNRPRKSTLETAQVLGATTRREMKKVLKKRDASYSELVQRL
ERAEKIKKAEDHLEAQRKVMNSKGTKRKVKDAQDGQPAVYKWKKERSR*
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mRNA from alignment at F-serratus_M_contig1528:119102..122816+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1528.3614.1 ID=mRNA_F-serratus_M_contig1528.3614.1|Name=mRNA_F-serratus_M_contig1528.3614.1|organism=Fucus serratus male|type=mRNA|length=3715bp|location=Sequence derived from alignment at F-serratus_M_contig1528:119102..122816+ (Fucus serratus male)
ATGGCGTCTCTTCGCAATGCAGTCAAGCGCGTCGAGCATAAGGAAAGGGC CCAGCCGGCGTCGCGTCGTAAGCTTGGTCTTTTGGAGAAACACAAGGACT ACGGTGAGCCACGAACTCACTCACCATCTACGCTTGTAGCTAGTACGATA CCAAAGCAGTACCGCTGTACGGAGTATTACATAATACGGCATAGTAGGTT GGGTCTCTTGACCAATCCGCATACACAAACCTTGGAGGCAACTGGTAATT TACCTCAGGCAGGAACTCCGGGCTTGCCCTGGCTTGAATCAAACCAGAGC TCCAGCTCTCGCCTCCGAAGTTTTCCATATTGCACGTGCCCGATTAAATA TTTAGTTGGAAAACCGAGGCGCATATGATTTGGCCCATGGCGATATCTGA AACGGCAGTCAGTACCTTGAAGACTTCTGGCCCCGTGCCGGCGGACTCTC GGCAGTAAACGTCATTGCTATGAAATGGTGTGACCTGATACACTCGGAAC TGACCCGGTGGCGGTTGACGGTTTGCATGGTTGCCGTCGCGGAAAGCGGG AGGAATTTCGCGAATATGCACCAGATTCAGCCTGAGTGTAGAGAGTGAGC AGGCTGATGTGGGACGGAACAGCCGAACCCATCTCGCGAGACCAAATTCT CAGGCGCGAACGGACAGGGAAGAATGTTTTTCCCTCTTTTTTTCCCTCTT CAGCTGGCCACTATTAGAGCAGGAATGCCACCCATACCCGGTTGATCCAC ATATTCCTGAAAGTTCTGACCGCACCGCGAGTACATGTGTACTGACTGCT ACAGCAGTAGTTTTGGGAGAATTCCTCTTCAAACCAACCCAACGCCATTT TCTATTTTCAATTTATCCTCCGAATAAACGAAAAAAGTCAAAAGCGCTTC CAATATTATAGTTTGCAGCTCCGCTAGCTCTGTAAGCATGATTAGACCCA AGCCCTCTACAGTACATGTAATCACTCTCCTACGTGATACGAAGAACAGG GCATGCATCAAACACCTTCTCTCTGATACGGTACGCCACACGTTCAACTT GTTAATCCCACAGTGCTCCGGGCTCGCAACTATGGCAAGAAGAGAGATCG TATGCAGGCCCTTAAGCTCAAGGCCGCGATGAAAAATCCAGACGAGTTCT ACTTTGCCATGCACCGCAAGAAGTCGAACAAAGGCGTTCACGAGCTGGAC GGTGCCGAGAAGTTGCCGCACGACGTCATCCAGGTGCTATAGGCAGCACG AAGTAGGCATTCCTTTGGCGTTGCTCCCGCCTTCGCTTCGATGGGCCAAC GAGGAGTTTGACCAGCTACCATTAAACTTTTCAAGGAGTTGAAAACGCTC AAACATCTTCATGCTTGCAGGATGGTGCTGCACGGCTCTCGCTTCCCTTG ACTCGAAAACTAGCTCCTAGCTCGCTGTCTCGGTCGGTCTGCGAGCTTAT CGTCATCCTTATCGTAACCTTTAGAACTTACCCGGTACATTTTCTACTCT ACCTTCGCGCGGGGCTTACTTTGTCGTCGACCGCATTCCAGATGTTGAAG ACGCAGGACTTGGGGTACGTTTCCACGAAGCGTTCTGCCGACGAAAGAAA AGCCGCTAAGCTCCGAGAGTCGCTGCACCTGCTGGACGCAGGGCCTCGAA ACAAGCATACGGTATTTTTTGACACGGAGGAGGAGGCAAAGCGGTGCGTC GCGGGGACACGACCCCGGTCCGTATTTATGGCAAACTCTAAAGCACGACA GCGTTCACGTATACCGCACGCAGCTAGCTCTTAGTCCATTGCTGGCTTTG AATCCCCCTTCCATATGCTTGTTTGGAGGTTACGAGAAACATGTAACAAA AATCGCGCGCTAAAGCCGGTCATATGAAGCAATGACTCTTGGAGATCTCA AACGTAACAGGACTGTGATGCGTGCCCTTCCCTGGGCATCCCGACAGGTT CGACGTGGCAGAGCATTTCGACACCGTCCCGGAACTCGCAGATAGGTCGT TCAACAGGCCACGAAAGAGCACGCTCGAGACGGCACAGGTGAGGTCCCCA ACGAAACACAGGTATGTAAAGCTTGAAGTGCCTTGTGACCTGCATCTGTG GTGTTTTTCTGGCATTGCTCGGAGGAACCGGACGACGCTGAGTAATCTAA GTTCTTGTGTTCTTTACTGCTTTAAAACGTGATATGGGGTTTCCAACCAT TGGCCTTTGTTCGCCTCGAGTCTGGGGGGGGGGGGGGGGCCGCAACCCTT ACCGTTTTTAAACACTTCTACCCATTCATGTCCCGTTCAAAGGATTTACG GCTTGCCTTCACGACGTTTGCCGTACCCGACGTGCATACTAGTGTTTTCA TGATTGATTGTCGATGAGACGGTGGATCCGTGCACCTCCGACCGCTTGTG CCAGGTTCTGGGGGCAACAACCCGGCGGGAGATGAAGAAGGTGCTCAAGA AGCGAGACGCGTCCTACAGCGAGCTCGTGCAGAGGTTGGAAAGGGTGAGA GTGGCCCCTCGCGGGAAGCTCGCGCCCTCGATCTGTAACCTGTGATTCCA TGTTATGATTTACGTGTCTTCGTGAGGCTTGCTGACAACAGTAGCAGTTC CTCCCTGATCATGGAACGACACGAGAGCGCTCTACGAGTACTGTAATACG AGTGAGGCAAACTAAACACCTTGGTCACCTTGGCTTTAAGTGTTTATCTT TGTTTTGTGAACAAACTCGCAAAATGCGCCCCATCCTGTCACGCCTTATT CAGACATCTCTTGGTCGATTCTCGGCCCTGTTTTGCGATTCAAGCATTCA AGATTTGACTCTTGCTTGTCTCTGAGAGCAGCGGATGATGAATCCAGCTC GTTTTTCAGTCGTGTTGGCCCTCATCCTGCCACGTTAGTGGGGCGTAGGG TGGAGTCGGCGAATGTGAGGCGAACGACCGCATGAACTTATTGTGCCATC CGCAGGCGGAAAAGATTAAGAAGGCTGAGGACCATCTTGAGGCGCAGCGC AAGGTGATGAACTCCAAGGGTACGAAGCGGAAGGTCAAAGATGCGCAGGA CGGCCAGCCCGCCGTGTACAAATGGAAGAAGGAGCGGTCACGCTGACGCC ACGAGTGTCGTAACTGTTTTATTTTTTCAGCCCTTTGCGACCTTGACGCT TTGCATCGGCTAAGGGTTTCACTGCACGGCGGAGCATCAACCACCCTTTT CGCTGCGCTGTTTGACTTCAGTACGAAGGAGTGCGCGAAGCCAGCGCTAT TTCGAATGTTTTTTCGGTCATGTAGACCCGATCCTGCGTCCTTCGAGGGC TCACTGCATCCCCTATCACGCTTGCAAGCGTTTGTTTCGCTTCGCTTCTC GGTTTGGTCCGGTATCTTGAAATCAGCGACGTCTAGGTCTACCTTTATAT AGAGATTCAGTCACGAACGTGCTTCGACTTATTTTCGAAAGAACAGCTGT CCCCGCCAAGCACGCGCCCCCATAGGGTTTTCTGCAACTTGTATGCAGGT AACTAGTACCCCTTGTCGGAGCACACGGGTACGCCCCTGCGTTTGATAGT CTTGGTGCGGGGCAAGCTGGCGCCAAAGAGATCGACGTGGTTACCATGAT TGATCTCCGCAGGATACCTTACCCCATCCGACGGGCGGGGTGGCAACATC AGAGACTTCCGAAGCGAGGTTCGCAAGTAAAACGAAATCCAACCGCTCGC TCTCGTTAAAAGAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1528:119102..122816+

>mRNA_F-serratus_M_contig1528.3614.1 ID=mRNA_F-serratus_M_contig1528.3614.1|Name=mRNA_F-serratus_M_contig1528.3614.1|organism=Fucus serratus male|type=CDS|length=1494bp|location=Sequence derived from alignment at F-serratus_M_contig1528:119102..122816+ (Fucus serratus male)
ATGGCGTCTCTTCGCAATGCAGTCAAGCGCGTCGAGCATAAGGAAAGGGC
CCAGCCGGCGTCGCGTCGTAAGCTTGGTCTTTTGGAGAAACACAAGGACT
ACGATGGCGTCTCTTCGCAATGCAGTCAAGCGCGTCGAGCATAAGGAAAG
GGCCCAGCCGGCGTCGCGTCGTAAGCTTGGTCTTTTGGAGAAACACAAGG
ACTACGTGCTCCGGGCTCGCAACTATGGCAAGAAGAGAGATCGTATGCAG
GCCCTTAAGCTCAAGGCCGCGATGAAAAATCCAGACGAGTTCTACTTTGC
CATGCACCGCAAGAAGTCGAACAAAGGCGTTCACGAGCTGGACGGTGCCG
AGAAGTTGCCGCACGACGTCATCCAGTGCTCCGGGCTCGCAACTATGGCA
AGAAGAGAGATCGTATGCAGGCCCTTAAGCTCAAGGCCGCGATGAAAAAT
CCAGACGAGTTCTACTTTGCCATGCACCGCAAGAAGTCGAACAAAGGCGT
TCACGAGCTGGACGGTGCCGAGAAGTTGCCGCACGACGTCATCCAGATGT
TGAAGACGCAGGACTTGGGGTACGTTTCCACGAAGCGTTCTGCCGACGAA
AGAAAAGCCGCTAAGCTCCGAGAGTCGCTGCACCTGCTGGACGCAGGGCC
TCGAAACAAGCATACGGTATTTTTTGACACGGAGGAGGAGGCAAAGCGAT
GTTGAAGACGCAGGACTTGGGGTACGTTTCCACGAAGCGTTCTGCCGACG
AAAGAAAAGCCGCTAAGCTCCGAGAGTCGCTGCACCTGCTGGACGCAGGG
CCTCGAAACAAGCATACGGTATTTTTTGACACGGAGGAGGAGGCAAAGCG
GTTCGACGTGGCAGAGCATTTCGACACCGTCCCGGAACTCGCAGATAGGT
CGTTCAACAGGCCACGAAAGAGCACGCTCGAGACGGCACAGGTTCGACGT
GGCAGAGCATTTCGACACCGTCCCGGAACTCGCAGATAGGTCGTTCAACA
GGCCACGAAAGAGCACGCTCGAGACGGCACAGGTTCTGGGGGCAACAACC
CGGCGGGAGATGAAGAAGGTGCTCAAGAAGCGAGACGCGTCCTACAGCGA
GCTCGTGCAGAGGTTGGAAAGGGTTCTGGGGGCAACAACCCGGCGGGAGA
TGAAGAAGGTGCTCAAGAAGCGAGACGCGTCCTACAGCGAGCTCGTGCAG
AGGTTGGAAAGGGCGGAAAAGATTAAGAAGGCTGAGGACCATCTTGAGGC
GCAGCGCAAGGTGATGAACTCCAAGGGTACGAAGCGGAAGGTCAAAGATG
CGCAGGACGGCCAGCCCGCCGTGTACAAATGGAAGAAGGAGCGGTCACGC
TGAGCGGAAAAGATTAAGAAGGCTGAGGACCATCTTGAGGCGCAGCGCAA
GGTGATGAACTCCAAGGGTACGAAGCGGAAGGTCAAAGATGCGCAGGACG
GCCAGCCCGCCGTGTACAAATGGAAGAAGGAGCGGTCACGCTGA
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