mRNA_F-serratus_M_contig1528.3609.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1528.3609.1
Unique NamemRNA_F-serratus_M_contig1528.3609.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1528.3609.1 vs. uniprot
Match: D7FNG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG7_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.350e-33
Identity = 58/88 (65.91%), Postives = 75/88 (85.23%), Query Frame = 2 
Query:    2 EMIGELGSGLQLRREELICPDPLRCYPKSAEDRSALQSGNVVVKGVRADLPPEVVPALLVLSDELNLNEISCVEIWSQVDETWQRRAL 265
            EMIG+L  GL+ RR++LICPDP RC+P++ EDR+ALQSG+VVVKG RA LPP+ V  L+ LSDEL++NE+ CV++WSQV+E WQRRAL
Sbjct:   25 EMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRAALQSGSVVVKGFRAKLPPQAVSELVALSDELDINEVVCVDLWSQVNEPWQRRAL 112
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BLAST of mRNA_F-serratus_M_contig1528.3609.1 vs. uniprot
Match: A0A6H5L7W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.380e-14
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 2 
Query:    2 EMIGELGSGLQLRREELICPDPLRCYPKSAEDRSALQSGNVVVKGVRA 145
            EMIG+L  GL+ RR++LICPDP RC+P++ EDR+ALQSG+VVVKG RA
Sbjct:   33 EMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRTALQSGSVVVKGFRA 80
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1528.3609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNG7_ECTSI2.350e-3365.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7W6_9PHAE1.380e-1468.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1528contigF-serratus_M_contig1528:50501..52033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog2880.D7FNG7
Hectar predicted targeting categoryother localisation
EggNOG OGs2CAJ9@1,2SW6E@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size266
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1528.3609.1prot_F-serratus_M_contig1528.3609.1Fucus serratus malepolypeptideF-serratus_M_contig1528 50501..52029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929513.9891622-CDS-F-serratus_M_contig1528:50500..505301622929513.9891622-CDS-F-serratus_M_contig1528:50500..50530Fucus serratus maleCDSF-serratus_M_contig1528 50501..50530 -
1690962887.2511308-CDS-F-serratus_M_contig1528:50500..505301690962887.2511308-CDS-F-serratus_M_contig1528:50500..50530Fucus serratus maleCDSF-serratus_M_contig1528 50501..50530 -
1622929514.006491-CDS-F-serratus_M_contig1528:51243..513301622929514.006491-CDS-F-serratus_M_contig1528:51243..51330Fucus serratus maleCDSF-serratus_M_contig1528 51244..51330 -
1690962887.2673483-CDS-F-serratus_M_contig1528:51243..513301690962887.2673483-CDS-F-serratus_M_contig1528:51243..51330Fucus serratus maleCDSF-serratus_M_contig1528 51244..51330 -
1622929514.0176406-CDS-F-serratus_M_contig1528:51885..520291622929514.0176406-CDS-F-serratus_M_contig1528:51885..52029Fucus serratus maleCDSF-serratus_M_contig1528 51886..52029 -
1690962887.275015-CDS-F-serratus_M_contig1528:51885..520291690962887.275015-CDS-F-serratus_M_contig1528:51885..52029Fucus serratus maleCDSF-serratus_M_contig1528 51886..52029 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929514.039629-UTR-F-serratus_M_contig1528:52029..520331622929514.039629-UTR-F-serratus_M_contig1528:52029..52033Fucus serratus maleUTRF-serratus_M_contig1528 52030..52033 -
1690962887.282662-UTR-F-serratus_M_contig1528:52029..520331690962887.282662-UTR-F-serratus_M_contig1528:52029..52033Fucus serratus maleUTRF-serratus_M_contig1528 52030..52033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1528.3609.1

>prot_F-serratus_M_contig1528.3609.1 ID=prot_F-serratus_M_contig1528.3609.1|Name=mRNA_F-serratus_M_contig1528.3609.1|organism=Fucus serratus male|type=polypeptide|length=87bp
MIGELGSGLQLRREELICPDPLRCYPKSAEDRSALQSGNVVVKGVRADLP
PEVVPALLVLSDELNLNEISCVEIWSQVDETWQRRAL
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mRNA from alignment at F-serratus_M_contig1528:50501..52033-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1528.3609.1 ID=mRNA_F-serratus_M_contig1528.3609.1|Name=mRNA_F-serratus_M_contig1528.3609.1|organism=Fucus serratus male|type=mRNA|length=1533bp|location=Sequence derived from alignment at F-serratus_M_contig1528:50501..52033- (Fucus serratus male)
CGAGATGATAGGAGAGCTGGGCTCTGGGCTCCAATTGCGGCGAGAGGAGC
TTATCTGCCCGGACCCACTGCGCTGCTACCCCAAGTCAGCCGAAGATCGT
AGCGCTCTGCAGAGCGGAAACGTGGTGGTCAAGGGCGTCCGCGCAGACGT
AAGCCGTGCTCTCCAGCACCCCTGCCAAGGAAAGGGGTCCCTACTATAAT
AACAGTAATAATAATACAAACGTTTCAAAGCTCTATAGACTAATGATATT
ACAAAGTATGCTACGAGGTGTGATGTAATTTATCGGCACTGATATCACAG
CACTACCAGTATAGTATTAATAGGCTCTACTGCCTGTGTGTTAACCATTT
TTTTTTGTTGGACGGCCTTTCGACGTCGACGTCGTCGTCTTTTTTTTTTT
TTTTTTTTTTTTTGTCACAGCAGTGTGTTCGTGTGTTCTAAAAGATTCAG
GATACAGTCAGTAGCAACGGGCGCCGCGGAACCTTCCCAAAGAATTTTAC
GAAGTACGTGGCACCCAGGTTTCGTTATGACCACCGGGGCGTTTCGTTTT
GAACACACAACTTTGCTCCTTGCTGCCCGTTTAGACTATGTCGGGGTTAC
GGTTACGGTTACGGTAACGTGTGTGGCTAAGCATTACCATTAGCTCTGTT
CACCCATCCATGTACAGTAACTTCTCGTGTACTTCGCACGCCACGTACCG
CAGCTGCCACCCGAAGTGGTGCCTGCCCTGCTGGTGCTGTCTGATGAGCT
CAACCTCAACGAGATCTCGTGCGTGGAGATATGGTCGCAGGTGACGCGCA
GCCTTTGCACGTGGATAAAAAATGTAAAAAATGTTGCCATGCCATGTGGA
TTTTGTCTATATTTTGGACGGGATGACCGAACTATTAATATTGATACATA
CAATATTAAATATTAATAGTATCTCCCAAAGGTGTTCCTGTTCCTGACAT
CGGTCTTGGCTGTCAATAGCAGTGCCTATTTTATTGCATGTGTATAATAG
TGTAGGATGCCGAAACAGCGCATCTGCAATTCTTTCGGTATACTCCAAGT
CCAAGCTTTATCTTTTATGTGCAGAAAAGATTTATCTTGGTTTTTTGCTC
AGAAAACACCGACCAACCTTTTGTGTGATTGGCGGGTACTACTGTACTGT
AGGAGCTGTCGCCTGCCGCTGGCTAGCCCTTGAACAGCGAAGAGCATTAT
ACATTTATGTATGTAAAGACAAGATCGTTATCGTTTTTGAGAGTTTTTTG
TTTGTTTGTTTTTTTCTTTCTTCCTGCGCAACGCGGTGCGTCGTTGCGTG
TGATCGTACTAAACGTATAATATTAATAGTGTTCTATAGAACAGGGGCGG
CACCTTCACGTGCTTCGTTGAGCTAACCGTCTTCAGACGATGGATTTTAC
GTGAGAAAAGGCTGAAGTGCTTCACTTTTCTGCTTTCGAGCCGCAGTCTA
CGTTTAGCCCGTCAGCATGAAATCGGAACGTGCTTCCTTTGACAATGCGA
TAGGTGGATGAAACCTGGCAACGGCGAGCCTTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1528:50501..52033-

>mRNA_F-serratus_M_contig1528.3609.1 ID=mRNA_F-serratus_M_contig1528.3609.1|Name=mRNA_F-serratus_M_contig1528.3609.1|organism=Fucus serratus male|type=CDS|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig1528:50501..52033- (Fucus serratus male)
ATGATAGGAGAGCTGGGCTCTGGGCTCCAATTGCGGCGAGAGGAGCTTAT
CTGCCCGGACCCACTGCGCTGCTACCCCAAGTCAGCCGAAGATCGTAGCG
CTCTGCAGAGCGGAAACGTGGTGGTCAAGGGCGTCCGCGCAGACATGATA
GGAGAGCTGGGCTCTGGGCTCCAATTGCGGCGAGAGGAGCTTATCTGCCC
GGACCCACTGCGCTGCTACCCCAAGTCAGCCGAAGATCGTAGCGCTCTGC
AGAGCGGAAACGTGGTGGTCAAGGGCGTCCGCGCAGACCTGCCACCCGAA
GTGGTGCCTGCCCTGCTGGTGCTGTCTGATGAGCTCAACCTCAACGAGAT
CTCGTGCGTGGAGATATGGTCGCAGCTGCCACCCGAAGTGGTGCCTGCCC
TGCTGGTGCTGTCTGATGAGCTCAACCTCAACGAGATCTCGTGCGTGGAG
ATATGGTCGCAGGTGGATGAAACCTGGCAACGGCGAGCCTTGGTGGATGA
AACCTGGCAACGGCGAGCCTTG
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