mRNA_F-serratus_M_contig1528.3608.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1528.3608.1
Unique NamemRNA_F-serratus_M_contig1528.3608.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1528.3608.1 vs. uniprot
Match: D7FNG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG7_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 1.530e-64
Identity = 147/297 (49.49%), Postives = 184/297 (61.95%), Query Frame = 1 
Query:   22 ISKGACARREDFMLDSLLSSVEVLFFIYYSYQIKPEEAKQLVTLLETAGRALLALQEAARQ-----DVASPGVS--------NLQTGFLFAGVTTAVTTTAGVGSXXXXXV-----------EPQRQREVVRLCAVMEATSVLLCTLSMAFSLDFALYGRNAPGEKNDSGNALAVIA--AGGRGCEPYGGDGNGNLFGGNSSGGDIALLDDLICSRMWDHVQVQGVVLAIWSTFMAPSAAAKLSFGTKAHADEHLRKVVITANTNGAMKFLRGPVLATLRRPPFPARDLTPRLFYLE 834
            +S+GA  RRE+FMLDSL+ +VEVLFFIYYSYQIKP+EAKQLVTL+ETAGR LLALQ+   +       A+P  +        N  +G+ F    TA   T     XXXXX            E +R R+V RLCA +E TSVLLCTLSMA S + ALY R+ PG KN+  NAL  +A   GG G +P G DG+  +         I  L+  ICSR WDH QVQG V+ +W++F+AP A+   +      AD+ L++V+  A  NGA+KFLRGPVL  LRRPPF AR + PR FYLE
Sbjct:  248 MSEGAAERREEFMLDSLVCAVEVLFFIYYSYQIKPDEAKQLVTLVETAGRELLALQKTVAEADGIPPTATPATAGGGGLHYTNGLSGYGFGHGATAAGATXXXXXXXXXXXXXXXXXXXXXDEAERHRDVFRLCAALEVTSVLLCTLSMALSQNNALYSRSVPGAKNNGSNALNALALVVGGGGGQPLG-DGDKEV---------ILHLNKEICSREWDHSQVQGAVMMVWASFIAPFASGGQTVADT-DADKQLQQVMAAAAVNGAVKFLRGPVLTVLRRPPFAARSVAPRPFYLE 533
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BLAST of mRNA_F-serratus_M_contig1528.3608.1 vs. uniprot
Match: A0A6H5L8I6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8I6_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 9.960e-39
Identity = 109/246 (44.31%), Postives = 138/246 (56.10%), Query Frame = 1 
Query:  145 VTLLETAGRALLALQEAARQD-----VASPGVS--------NLQTGFLFAGVTTAVTTTAGVGSXXXXXV---------EPQRQREVVRLCAVMEATSVLLCTLSMAFSLDFALYGRNAPGEKNDSGNALAVIA--AGGRGCEPYGGDGNGNLFGGNSSGGDIALLDDLICSRMWDHVQVQGVVLAIWSTFMAPSAAAKLSFGTKAHADEHLRKVVITANTNGAMKFLRGPVLATLRRPPFPARDL 810
            VTL+ETAGR LLALQ+           A+P  +        N  +G  F    TA   T     XXXXX          E +R R+V RLCA +E TSVLLCTLSMA S + ALY R+ PG KN+  NAL  +A   GG G +P G DG+  +         I  L+  ICSR WDH QVQG V+ +W++F+AP A+   +      AD+ L++V+  A  NGA+KFLRGPVL  LRRPPF AR +
Sbjct:    9 VTLVETAGRELLALQKTVADTDGIPPTATPATAGGGGVHYTNGLSGCGFGHGATAAGATXXXXXXXXXXXXXXXXXXGDETERHRDVFRLCAALEVTSVLLCTLSMALSQNNALYSRSLPGAKNNGRNALNALALVVGGGGGQPLG-DGDKEV---------ILHLNKEICSREWDHSQVQGAVMMVWASFIAPFASGGQTVADT-DADKQLQQVMAAAAVNGAVKFLRGPVLTVLRRPPFAARSV 243
[Close]
BLAST of mRNA_F-serratus_M_contig1528.3608.1 vs. uniprot
Match: A0A6H5L7W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W6_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 8.150e-5
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   25 SKGACARREDFMLDSLLSSVEVLFFIYYSYQIKPE 129
            S+GA  RRE+FMLDSL+ +VEVLFFIYYSYQ + E
Sbjct:  218 SEGAAERREEFMLDSLVCAVEVLFFIYYSYQAREE 252
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1528.3608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNG7_ECTSI1.530e-6449.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8I6_9PHAE9.960e-3944.31Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7W6_9PHAE8.150e-571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1528contigF-serratus_M_contig1528:46606..49336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.0
Seed ortholog evalue5.3e-57
Seed eggNOG ortholog2880.D7FNG7
Hectar predicted targeting categoryother localisation
EggNOG OGs2CAJ9@1,2SW6E@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size837
Cds size834
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1528.3608.1prot_F-serratus_M_contig1528.3608.1Fucus serratus malepolypeptideF-serratus_M_contig1528 46607..49336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929513.8847609-CDS-F-serratus_M_contig1528:46606..466301622929513.8847609-CDS-F-serratus_M_contig1528:46606..46630Fucus serratus maleCDSF-serratus_M_contig1528 46607..46630 -
1690962887.199834-CDS-F-serratus_M_contig1528:46606..466301690962887.199834-CDS-F-serratus_M_contig1528:46606..46630Fucus serratus maleCDSF-serratus_M_contig1528 46607..46630 -
1622929513.8985558-CDS-F-serratus_M_contig1528:46947..471481622929513.8985558-CDS-F-serratus_M_contig1528:46947..47148Fucus serratus maleCDSF-serratus_M_contig1528 46948..47148 -
1690962887.211369-CDS-F-serratus_M_contig1528:46947..471481690962887.211369-CDS-F-serratus_M_contig1528:46947..47148Fucus serratus maleCDSF-serratus_M_contig1528 46948..47148 -
1622929513.9111922-CDS-F-serratus_M_contig1528:47756..479571622929513.9111922-CDS-F-serratus_M_contig1528:47756..47957Fucus serratus maleCDSF-serratus_M_contig1528 47757..47957 -
1690962887.220967-CDS-F-serratus_M_contig1528:47756..479571690962887.220967-CDS-F-serratus_M_contig1528:47756..47957Fucus serratus maleCDSF-serratus_M_contig1528 47757..47957 -
1622929513.9315093-CDS-F-serratus_M_contig1528:48420..487111622929513.9315093-CDS-F-serratus_M_contig1528:48420..48711Fucus serratus maleCDSF-serratus_M_contig1528 48421..48711 -
1690962887.2308218-CDS-F-serratus_M_contig1528:48420..487111690962887.2308218-CDS-F-serratus_M_contig1528:48420..48711Fucus serratus maleCDSF-serratus_M_contig1528 48421..48711 -
1622929513.945235-CDS-F-serratus_M_contig1528:49219..493361622929513.945235-CDS-F-serratus_M_contig1528:49219..49336Fucus serratus maleCDSF-serratus_M_contig1528 49220..49336 -
1690962887.2409837-CDS-F-serratus_M_contig1528:49219..493361690962887.2409837-CDS-F-serratus_M_contig1528:49219..49336Fucus serratus maleCDSF-serratus_M_contig1528 49220..49336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1528.3608.1

>prot_F-serratus_M_contig1528.3608.1 ID=prot_F-serratus_M_contig1528.3608.1|Name=mRNA_F-serratus_M_contig1528.3608.1|organism=Fucus serratus male|type=polypeptide|length=278bp
GDGSSSEISKGACARREDFMLDSLLSSVEVLFFIYYSYQIKPEEAKQLVT
LLETAGRALLALQEAARQDVASPGVSNLQTGFLFAGVTTAVTTTAGVGSG
DGVGVEPQRQREVVRLCAVMEATSVLLCTLSMAFSLDFALYGRNAPGEKN
DSGNALAVIAAGGRGCEPYGGDGNGNLFGGNSSGGDIALLDDLICSRMWD
HVQVQGVVLAIWSTFMAPSAAAKLSFGTKAHADEHLRKVVITANTNGAMK
FLRGPVLATLRRPPFPARDLTPRLFYLE
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mRNA from alignment at F-serratus_M_contig1528:46606..49336-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1528.3608.1 ID=mRNA_F-serratus_M_contig1528.3608.1|Name=mRNA_F-serratus_M_contig1528.3608.1|organism=Fucus serratus male|type=mRNA|length=2731bp|location=Sequence derived from alignment at F-serratus_M_contig1528:46606..49336- (Fucus serratus male)
GGGGATGGAAGCAGCAGTGAAATATCAAAGGGGGCGTGCGCCCGCCGGGA
GGATTTCATGCTTGATTCTCTGCTGTCCAGTGTGGAGGTTCTATTTTTCA
TCTATTACTCTTACCAGGTGATGATAAATAAAGGGTGTACCACTTTTGTA
GTGTTAGCTCTATAGATCTAGACTAGGTAGCGGATAAGGGGTTGTTTTCT
TGTTAAGGTGCAAGGTATTCGCAAGACCCGTGAGCGTTTCGGGGGGTTTT
TTCTCGGCGATCCCCACTCCGTGAGGTATTCCCAAATCAATCCATCGGAT
GTTAGTCCTTCAACGGGTGCAACGGAGGAGCGGTCAGTGTGTCAACAAAA
AGGCATCGCGGGTGTTTTGTTTTGTTTTCTTGTCGCGCTCGCGCGTTTTT
AAAGTGCTCCGCTTGCGCAGCCCATGGTGGTCAACGAGCTCCGCGCGTCA
CTGTATGGTTGCTGCAAGGGGTGAAGGAGTAAGGGAAAGTGGCTCGCGCT
ATGAACAAGGCCTCAAGGCCGATCGAAGAGTATGGACCACCGTGCCTACA
ATCCAGACGCCTACATGCACACCTTCATAATATACAAAACGCTTCTGATT
TTGGTTGTTGTTGCATATTCCTCAGATCAAGCCTGAAGAAGCGAAGCAGT
TGGTGACTCTTCTCGAAACCGCGGGTCGAGCGCTGTTGGCCCTGCAAGAG
GCTGCCAGGCAGGATGTGGCTTCCCCCGGTGTATCGAACCTCCAAACCGG
CTTCCTTTTCGCAGGGGTAACGACGGCGGTGACGACAACGGCAGGCGTAG
GGTCTGGGGACGGAGTTGGCGTGGAACCGCAGCGTCAGCGGGAGGTAGTG
CGCCTGTGTGCGGTGATGGAGGCCACGTCGGTGCTGCTGTGCACCCTCTC
CATGGCTTTCAGCCTGGTACGTGCTCGTAGCACTGGCCGTGTTGTGCCGT
GCAGATCTCCCCCCATTGAGTTGGTCGGCGAATCGCGGACTGTCTCCTTG
GGAGAGGTTTCGCGAGCGGTTTTGCCCTCGCATAGTGCGATGCACAAGTT
AAACATGTTCTCGCTGTTATTGTATTTCATGGTAGCCTCGGTGTTGCCAG
ACACCATCCCTCGACCCAGCTTTCCGCTACGTCCATCAGCCTTCCGCGAT
CCGTACGCGTCGCGCGACTCGCTTAACCCTGAACTACTTCTACCCCCCCC
TCGCAAGAAAAAAGAAATACAACGCCTCACCCAATTCTGTCTCGAGCTTA
AGGATGAGCTTCATGTCGTGTCTGGCTTGCTGCAAGCCATACAGCTACAG
CTGTACGTTGTGTCGCTGATTTTTTTTTGTATTTGGTGGGCGGTCGTCCG
TAAACAATCTGTCTTGACCCCTCTCCAAGGACTTCGCGCTCTATGGCCGG
AATGCTCCGGGGGAAAAGAACGACAGCGGGAACGCGCTCGCGGTTATCGC
GGCTGGAGGCAGAGGTTGCGAGCCGTACGGTGGTGACGGTAATGGTAACC
TGTTTGGCGGCAACAGTAGCGGTGGCGATATCGCACTTCTCGATGACTTG
ATCTGCAGTCGCATGTGGGATCACGTTCAGGTGTGTTGCGTGTTTTTTTG
CGTTTTGGTTTTGTAGATATATCGTGGGGTAACAAGAAGGGAGGGAGGGA
GTGAAAGGAGTAAACCCGTCCGGTTGTAAGACTCGCTTCCGCCAAGACAA
AAGAGCCACTGTGCGTACGGCAGTCAGACGTAAAACCTATTCAACGTATA
GTAATCAAACATGTAATAGTTTGGGGCCTGTCAAGTCAGATTATACCGTG
TGTACCGGTAGTCAGACGTACCACTCTTACAGCATTACAGCAGTATTTTT
TTTGTGGCCTTTTTCGATGTCGTGGATCACACATAAGGACCACGAAACGT
AACAATCCATGCTTTTCGCGTACTCTGACTCTTTTGTTTGATTGTCTTGT
TTTATCTTTTCATGCACTTCATCTTGGATCATTTCTGTCTTGTACGGTGT
CGTGTACGGTGCCAAGCGGCTATTATTACCATTACTACCAGGATCTATCC
TAGCAACAGCACGTCGAAAATTTTGTTGCCGTCGCTGCCGCTTCCGAGAT
TTTCTTACAGAATAAAAGGCGCTAACACGGCCCCTCCCCGTCATCCCTCT
TTTTGTGTCTCTGCCTGTCTCTGTCTTGTCTCTTTTAGGTCCAAGGAGTA
GTTTTGGCGATCTGGTCCACTTTCATGGCCCCCTCCGCCGCCGCGAAACT
GTCGTTCGGTACCAAGGCCCATGCCGACGAGCATCTTCGCAAGGTGGTGA
TCACCGCGAACACCAACGGAGCGATGAAGTTCCTGCGAGGACCCGTGCTG
GCGACGCTGCGCCGCCCCCCGTTCCCGGCGAGGGATTTGGTGGGTGACGA
AGGCGTATTTTGTGGAGCAGGGGGGGGTAGGAGGGGAACAGTTGTAGTTA
TTGGGGGGCATCAGTTTATATATACACGAGCATCGATTTAGAATATGTAT
ATCCCTATATGTTTCTATGCCGATTCTCCTTGCCCCCAATCGCGTCGACT
TTTGGACCTCAAGTCAAAGTCGTTTACTGAAGTGTATTCGAGGACATTGA
CTCCCCCGATGATACAGTAAGGCACTCGACACCGATGAGGCGCGGCGAAA
TTGACTCCCCGATTTTTTTTCCTCCTCCTGCCTTTCATTGCCCGCCCGAT
TCCAAGACTCCGCGGCTGTTCTACTTGGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1528:46606..49336-

>mRNA_F-serratus_M_contig1528.3608.1 ID=mRNA_F-serratus_M_contig1528.3608.1|Name=mRNA_F-serratus_M_contig1528.3608.1|organism=Fucus serratus male|type=CDS|length=1668bp|location=Sequence derived from alignment at F-serratus_M_contig1528:46606..49336- (Fucus serratus male)
GGGGATGGAAGCAGCAGTGAAATATCAAAGGGGGCGTGCGCCCGCCGGGA
GGATTTCATGCTTGATTCTCTGCTGTCCAGTGTGGAGGTTCTATTTTTCA
TCTATTACTCTTACCAGGGGGATGGAAGCAGCAGTGAAATATCAAAGGGG
GCGTGCGCCCGCCGGGAGGATTTCATGCTTGATTCTCTGCTGTCCAGTGT
GGAGGTTCTATTTTTCATCTATTACTCTTACCAGATCAAGCCTGAAGAAG
CGAAGCAGTTGGTGACTCTTCTCGAAACCGCGGGTCGAGCGCTGTTGGCC
CTGCAAGAGGCTGCCAGGCAGGATGTGGCTTCCCCCGGTGTATCGAACCT
CCAAACCGGCTTCCTTTTCGCAGGGGTAACGACGGCGGTGACGACAACGG
CAGGCGTAGGGTCTGGGGACGGAGTTGGCGTGGAACCGCAGCGTCAGCGG
GAGGTAGTGCGCCTGTGTGCGGTGATGGAGGCCACGTCGGTGCTGCTGTG
CACCCTCTCCATGGCTTTCAGCCTGATCAAGCCTGAAGAAGCGAAGCAGT
TGGTGACTCTTCTCGAAACCGCGGGTCGAGCGCTGTTGGCCCTGCAAGAG
GCTGCCAGGCAGGATGTGGCTTCCCCCGGTGTATCGAACCTCCAAACCGG
CTTCCTTTTCGCAGGGGTAACGACGGCGGTGACGACAACGGCAGGCGTAG
GGTCTGGGGACGGAGTTGGCGTGGAACCGCAGCGTCAGCGGGAGGTAGTG
CGCCTGTGTGCGGTGATGGAGGCCACGTCGGTGCTGCTGTGCACCCTCTC
CATGGCTTTCAGCCTGGACTTCGCGCTCTATGGCCGGAATGCTCCGGGGG
AAAAGAACGACAGCGGGAACGCGCTCGCGGTTATCGCGGCTGGAGGCAGA
GGTTGCGAGCCGTACGGTGGTGACGGTAATGGTAACCTGTTTGGCGGCAA
CAGTAGCGGTGGCGATATCGCACTTCTCGATGACTTGATCTGCAGTCGCA
TGTGGGATCACGTTCAGGACTTCGCGCTCTATGGCCGGAATGCTCCGGGG
GAAAAGAACGACAGCGGGAACGCGCTCGCGGTTATCGCGGCTGGAGGCAG
AGGTTGCGAGCCGTACGGTGGTGACGGTAATGGTAACCTGTTTGGCGGCA
ACAGTAGCGGTGGCGATATCGCACTTCTCGATGACTTGATCTGCAGTCGC
ATGTGGGATCACGTTCAGGTCCAAGGAGTAGTTTTGGCGATCTGGTCCAC
TTTCATGGCCCCCTCCGCCGCCGCGAAACTGTCGTTCGGTACCAAGGCCC
ATGCCGACGAGCATCTTCGCAAGGTGGTGATCACCGCGAACACCAACGGA
GCGATGAAGTTCCTGCGAGGACCCGTGCTGGCGACGCTGCGCCGCCCCCC
GTTCCCGGCGAGGGATTTGGTCCAAGGAGTAGTTTTGGCGATCTGGTCCA
CTTTCATGGCCCCCTCCGCCGCCGCGAAACTGTCGTTCGGTACCAAGGCC
CATGCCGACGAGCATCTTCGCAAGGTGGTGATCACCGCGAACACCAACGG
AGCGATGAAGTTCCTGCGAGGACCCGTGCTGGCGACGCTGCGCCGCCCCC
CGTTCCCGGCGAGGGATTTGACTCCGCGGCTGTTCTACTTGGAAACTCCG
CGGCTGTTCTACTTGGAA
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