mRNA_F-serratus_M_contig1528.3606.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1528.3606.1
Unique NamemRNA_F-serratus_M_contig1528.3606.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1528.3606.1 vs. uniprot
Match: A0A6H5KXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR2_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.910e-11
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:  487 EREKAEKVFDSFNK-SGRVSTPAFEALLTLLEVPVKRREGDATESAQAAGLLSANSFSRKDFIDWYLAWCLQK 702
            ER  AE+ F S ++ SGRVS    E LLTLL +P  +R   ATESA+AAGLLSA SFS ++F+DWYL+W  ++
Sbjct:   46 ERLAAERAFSSMDQNSGRVSARRLEELLTLLGMPAAQRGAKATESARAAGLLSAPSFSCQEFVDWYLSWLFKE 118
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1528.3606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXR2_9PHAE1.910e-1154.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1528contigF-serratus_M_contig1528:3609..4988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size918
Cds size915
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929512.7315784-CDS-F-serratus_M_contig1528:3610..38481622929512.7315784-CDS-F-serratus_M_contig1528:3610..3848Fucus serratus maleCDSF-serratus_M_contig1528 3611..3848 -
1690962886.7081523-CDS-F-serratus_M_contig1528:3610..38481690962886.7081523-CDS-F-serratus_M_contig1528:3610..3848Fucus serratus maleCDSF-serratus_M_contig1528 3611..3848 -
1622929512.749458-CDS-F-serratus_M_contig1528:4311..49881622929512.749458-CDS-F-serratus_M_contig1528:4311..4988Fucus serratus maleCDSF-serratus_M_contig1528 4312..4988 -
1690962886.718209-CDS-F-serratus_M_contig1528:4311..49881690962886.718209-CDS-F-serratus_M_contig1528:4311..4988Fucus serratus maleCDSF-serratus_M_contig1528 4312..4988 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1528.3606.1prot_F-serratus_M_contig1528.3606.1Fucus serratus malepolypeptideF-serratus_M_contig1528 3611..4988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1528.3606.1

>prot_F-serratus_M_contig1528.3606.1 ID=prot_F-serratus_M_contig1528.3606.1|Name=mRNA_F-serratus_M_contig1528.3606.1|organism=Fucus serratus male|type=polypeptide|length=305bp
VGVDKSVDHAAVLLGTMRFGNTVNVNSGVSLEKTARAATIPDSSAKRSEE
GKAGVSGGFGVGNGVHDGGDDNNVGSQFNNVSPAGMRGKLRQDPEQSSHV
FLGGDPNEDSHTWPPLGTRNRQANQNCGGDDPSGGGTTQAPSPMFSQGPF
SATSSNVSAMSAEREKAEKVFDSFNKSGRVSTPAFEALLTLLEVPVKRRE
GDATESAQAAGLLSANSFSRKDFIDWYLAWCLQKRTCDVYSPAGAATRVR
TSAADGANDVRGRATFSAPQTLPKFDPRRRSTPAMNSPSSSDSEVYFSVK
AAAAF
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mRNA from alignment at F-serratus_M_contig1528:3609..4988-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1528.3606.1 ID=mRNA_F-serratus_M_contig1528.3606.1|Name=mRNA_F-serratus_M_contig1528.3606.1|organism=Fucus serratus male|type=mRNA|length=1380bp|location=Sequence derived from alignment at F-serratus_M_contig1528:3609..4988- (Fucus serratus male)
GTTGGGGTGGACAAAAGTGTTGATCACGCCGCAGTGCTCCTGGGAACCAT
GCGCTTCGGTAACACTGTTAATGTTAATAGTGGTGTGTCACTCGAGAAGA
CCGCGCGAGCGGCGACGATTCCGGACTCCTCGGCAAAGCGGTCCGAGGAA
GGCAAGGCTGGTGTTTCGGGTGGTTTTGGTGTAGGCAATGGCGTGCACGA
TGGCGGCGATGACAATAATGTTGGCTCTCAGTTCAACAATGTGTCGCCTG
CCGGTATGAGAGGTAAATTGCGCCAAGACCCCGAGCAGTCCTCCCACGTG
TTTCTTGGTGGGGACCCTAATGAGGATAGCCACACCTGGCCCCCACTTGG
GACGAGGAATCGTCAAGCCAATCAGAATTGCGGGGGAGATGATCCCTCAG
GTGGTGGCACGACCCAGGCGCCGTCGCCCATGTTTTCTCAGGGGCCCTTC
TCAGCGACCTCTTCAAACGTTTCGGCCATGAGCGCGGAACGAGAGAAAGC
GGAGAAAGTCTTCGATTCTTTCAACAAGTCGGGCAGGGTTTCCACGCCTG
CTTTCGAAGCATTGCTGACACTGCTTGAAGTTCCGGTGAAGCGTCGGGAA
GGAGACGCCACCGAATCCGCGCAGGCGGCAGGTCTTTTGAGCGCAAATTC
ATTCTCGCGCAAGGACTTCATCGATTGGTGGGTCTCTCTTTACTTACGAC
GCATTCGTTTTTTGATGTTGTGGTTTACATGCTTATGAACGGAAGAAGTC
GATTCAAGTTGCTTGTATTTTTCATGCCGTTACCCTTGACGCTTATTCTG
TTGTCAAATCGTATCTGTAGTGCACTCACCACTCACCTCACTTTCTCGAG
CAAGGATGGCATTTTTAGTTACCCCATGCCAGACAGATGAAGTCAGTCAT
CCATCGTGGGTTTCCCCATTTTTCGAGATTCGCATTGTGTTGCCGACAAA
GACTTTCTGTTTTGTGTCATTTTCTCTACTAAAAACGTCACTTCTGTCCA
CACATGCCGTGAAAAGATCATGTGCCCGTTAACCGTTAGGTTGGGGATAC
GCGGCTCAAGTCCGCTTGAATCTATAGTCCTTACATCGCTTTGCTGCCGT
GTAATTTCTTCTCGTTTCGTGAATTGTCGTCACCGAGTAGGTACCTTGCG
TGGTGCTTGCAGAAGCGCACTTGCGATGTATACTCCCCAGCCGGCGCAGC
TACTAGAGTTAGGACATCCGCCGCAGACGGCGCGAACGACGTTCGCGGTC
GTGCAACGTTTTCCGCACCACAGACTCTCCCCAAGTTTGACCCGCGAAGG
CGTTCTACCCCGGCTATGAACAGCCCCTCCTCGTCCGACAGCGAAGTCTA
TTTCAGCGTGAAAGCGGCGGCGGCATTCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1528:3609..4988-

>mRNA_F-serratus_M_contig1528.3606.1 ID=mRNA_F-serratus_M_contig1528.3606.1|Name=mRNA_F-serratus_M_contig1528.3606.1|organism=Fucus serratus male|type=CDS|length=1830bp|location=Sequence derived from alignment at F-serratus_M_contig1528:3609..4988- (Fucus serratus male)
GTTGGGGTGGACAAAAGTGTTGATCACGCCGCAGTGCTCCTGGGAACCAT
GCGCTTCGGTAACACTGTTAATGTTAATAGTGGTGTGTCACTCGAGAAGA
CCGCGCGAGCGGCGACGATTCCGGACTCCTCGGCAAAGCGGTCCGAGGAA
GGCAAGGCTGGTGTTTCGGGTGGTTTTGGTGTAGGCAATGGCGTGCACGA
TGGCGGCGATGACAATAATGTTGGCTCTCAGTTCAACAATGTGTCGCCTG
CCGGTATGAGAGGTAAATTGCGCCAAGACCCCGAGCAGTCCTCCCACGTG
TTTCTTGGTGGGGACCCTAATGAGGATAGCCACACCTGGCCCCCACTTGG
GACGAGGAATCGTCAAGCCAATCAGAATTGCGGGGGAGATGATCCCTCAG
GTGGTGGCACGACCCAGGCGCCGTCGCCCATGTTTTCTCAGGGGCCCTTC
TCAGCGACCTCTTCAAACGTTTCGGCCATGAGCGCGGAACGAGAGAAAGC
GGAGAAAGTCTTCGATTCTTTCAACAAGTCGGGCAGGGTTTCCACGCCTG
CTTTCGAAGCATTGCTGACACTGCTTGAAGTTCCGGTGAAGCGTCGGGAA
GGAGACGCCACCGAATCCGCGCAGGCGGCAGGTCTTTTGAGCGCAAATTC
ATTCTCGCGCAAGGACTTCATCGATTGGTTGGGGTGGACAAAAGTGTTGA
TCACGCCGCAGTGCTCCTGGGAACCATGCGCTTCGGTAACACTGTTAATG
TTAATAGTGGTGTGTCACTCGAGAAGACCGCGCGAGCGGCGACGATTCCG
GACTCCTCGGCAAAGCGGTCCGAGGAAGGCAAGGCTGGTGTTTCGGGTGG
TTTTGGTGTAGGCAATGGCGTGCACGATGGCGGCGATGACAATAATGTTG
GCTCTCAGTTCAACAATGTGTCGCCTGCCGGTATGAGAGGTAAATTGCGC
CAAGACCCCGAGCAGTCCTCCCACGTGTTTCTTGGTGGGGACCCTAATGA
GGATAGCCACACCTGGCCCCCACTTGGGACGAGGAATCGTCAAGCCAATC
AGAATTGCGGGGGAGATGATCCCTCAGGTGGTGGCACGACCCAGGCGCCG
TCGCCCATGTTTTCTCAGGGGCCCTTCTCAGCGACCTCTTCAAACGTTTC
GGCCATGAGCGCGGAACGAGAGAAAGCGGAGAAAGTCTTCGATTCTTTCA
ACAAGTCGGGCAGGGTTTCCACGCCTGCTTTCGAAGCATTGCTGACACTG
CTTGAAGTTCCGGTGAAGCGTCGGGAAGGAGACGCCACCGAATCCGCGCA
GGCGGCAGGTCTTTTGAGCGCAAATTCATTCTCGCGCAAGGACTTCATCG
ATTGGTACCTTGCGTGGTGCTTGCAGAAGCGCACTTGCGATGTATACTCC
CCAGCCGGCGCAGCTACTAGAGTTAGGACATCCGCCGCAGACGGCGCGAA
CGACGTTCGCGGTCGTGCAACGTTTTCCGCACCACAGACTCTCCCCAAGT
TTGACCCGCGAAGGCGTTCTACCCCGGCTATGAACAGCCCCTCCTCGTCC
GACAGCGAAGTCTATTTCAGCGTGAAAGCGGCGGCGGCATTCGTACCTTG
CGTGGTGCTTGCAGAAGCGCACTTGCGATGTATACTCCCCAGCCGGCGCA
GCTACTAGAGTTAGGACATCCGCCGCAGACGGCGCGAACGACGTTCGCGG
TCGTGCAACGTTTTCCGCACCACAGACTCTCCCCAAGTTTGACCCGCGAA
GGCGTTCTACCCCGGCTATGAACAGCCCCTCCTCGTCCGACAGCGAAGTC
TATTTCAGCGTGAAAGCGGCGGCGGCATTC
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