mRNA_F-serratus_M_contig1527.3596.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1527.3596.1
Unique NamemRNA_F-serratus_M_contig1527.3596.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1527.3596.1 vs. uniprot
Match: D7FGV7_ECTSI (Similar to PHD finger family protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV7_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 5.110e-13
Identity = 54/123 (43.90%), Postives = 67/123 (54.47%), Query Frame = 3 
Query:  297 GVVGCGHVFCFICIHTWLKQQSTCPLCNTKIKSIVKTLT--DEEIARHEARE---------EKPGKATFLERKRHKKRKRRFKTYEGGVVTKTIRIRHSEQAKRNRLEARNELHPQAPGGELH 632
            GV+ CGHVFCF CIH W K  S CP C  +IK I KTL+  DE  A+ E R+         +KP K   L+R RH  R  R K    G VTKT+R+R  +  K    + R   HPQA GG ++
Sbjct:  189 GVLSCGHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAKAKGETRKPVVSQRGMKKKPRKQ--LKRARH--RDSRAKNPASGFVTKTVRVR-PKSLKMTPAQQRAAPHPQARGGWMY 306
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BLAST of mRNA_F-serratus_M_contig1527.3596.1 vs. uniprot
Match: A0A6H5K2A7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A7_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.280e-7
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 3 
Query:  297 GVVGCGHVFCFICIHTWLKQQSTCPLCNTKIKSIVKTLTDEEIARHEAREEKP 455
            GV+ CGHVFCF CIH W K  S CP C  +IK I KTL+  + A+ +    KP
Sbjct:   93 GVLSCGHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAKSKGETRKP 145
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1527.3596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FGV7_ECTSI5.110e-1343.90Similar to PHD finger family protein, partial n=1 ... [more]
A0A6H5K2A7_9PHAE2.280e-750.94RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1527contigF-serratus_M_contig1527:13797..17362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons6
Model size886
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1527.3596.1prot_F-serratus_M_contig1527.3596.1Fucus serratus malepolypeptideF-serratus_M_contig1527 14482..17168 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929510.0043488-UTR-F-serratus_M_contig1527:13796..139651622929510.0043488-UTR-F-serratus_M_contig1527:13796..13965Fucus serratus maleUTRF-serratus_M_contig1527 13797..13965 +
1690962885.4286463-UTR-F-serratus_M_contig1527:13796..139651690962885.4286463-UTR-F-serratus_M_contig1527:13796..13965Fucus serratus maleUTRF-serratus_M_contig1527 13797..13965 +
1622929510.022464-UTR-F-serratus_M_contig1527:14393..144811622929510.022464-UTR-F-serratus_M_contig1527:14393..14481Fucus serratus maleUTRF-serratus_M_contig1527 14394..14481 +
1690962885.4369433-UTR-F-serratus_M_contig1527:14393..144811690962885.4369433-UTR-F-serratus_M_contig1527:14393..14481Fucus serratus maleUTRF-serratus_M_contig1527 14394..14481 +
1622929510.1374483-UTR-F-serratus_M_contig1527:17168..173621622929510.1374483-UTR-F-serratus_M_contig1527:17168..17362Fucus serratus maleUTRF-serratus_M_contig1527 17169..17362 +
1690962885.4906602-UTR-F-serratus_M_contig1527:17168..173621690962885.4906602-UTR-F-serratus_M_contig1527:17168..17362Fucus serratus maleUTRF-serratus_M_contig1527 17169..17362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929510.0384138-CDS-F-serratus_M_contig1527:14481..145351622929510.0384138-CDS-F-serratus_M_contig1527:14481..14535Fucus serratus maleCDSF-serratus_M_contig1527 14482..14535 +
1690962885.4453802-CDS-F-serratus_M_contig1527:14481..145351690962885.4453802-CDS-F-serratus_M_contig1527:14481..14535Fucus serratus maleCDSF-serratus_M_contig1527 14482..14535 +
1622929510.0575538-CDS-F-serratus_M_contig1527:15478..156161622929510.0575538-CDS-F-serratus_M_contig1527:15478..15616Fucus serratus maleCDSF-serratus_M_contig1527 15479..15616 +
1690962885.4541078-CDS-F-serratus_M_contig1527:15478..156161690962885.4541078-CDS-F-serratus_M_contig1527:15478..15616Fucus serratus maleCDSF-serratus_M_contig1527 15479..15616 +
1622929510.0774882-CDS-F-serratus_M_contig1527:16006..160751622929510.0774882-CDS-F-serratus_M_contig1527:16006..16075Fucus serratus maleCDSF-serratus_M_contig1527 16007..16075 +
1690962885.4631627-CDS-F-serratus_M_contig1527:16006..160751690962885.4631627-CDS-F-serratus_M_contig1527:16006..16075Fucus serratus maleCDSF-serratus_M_contig1527 16007..16075 +
1622929510.094655-CDS-F-serratus_M_contig1527:16463..165561622929510.094655-CDS-F-serratus_M_contig1527:16463..16556Fucus serratus maleCDSF-serratus_M_contig1527 16464..16556 +
1690962885.47179-CDS-F-serratus_M_contig1527:16463..165561690962885.47179-CDS-F-serratus_M_contig1527:16463..16556Fucus serratus maleCDSF-serratus_M_contig1527 16464..16556 +
1622929510.120526-CDS-F-serratus_M_contig1527:17087..171681622929510.120526-CDS-F-serratus_M_contig1527:17087..17168Fucus serratus maleCDSF-serratus_M_contig1527 17088..17168 +
1690962885.480289-CDS-F-serratus_M_contig1527:17087..171681690962885.480289-CDS-F-serratus_M_contig1527:17087..17168Fucus serratus maleCDSF-serratus_M_contig1527 17088..17168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1527.3596.1

>prot_F-serratus_M_contig1527.3596.1 ID=prot_F-serratus_M_contig1527.3596.1|Name=mRNA_F-serratus_M_contig1527.3596.1|organism=Fucus serratus male|type=polypeptide|length=145bp
MHHLPRQSTRRGAGVVGCGHVFCFICIHTWLKQQSTCPLCNTKIKSIVKT
LTDEEIARHEAREEKPGKATFLERKRHKKRKRRFKTYEGGVVTKTIRIRH
SEQAKRNRLEARNELHPQAPGGELHNNPGILAAIIRQYVREWFR*
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mRNA from alignment at F-serratus_M_contig1527:13797..17362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1527.3596.1 ID=mRNA_F-serratus_M_contig1527.3596.1|Name=mRNA_F-serratus_M_contig1527.3596.1|organism=Fucus serratus male|type=mRNA|length=3566bp|location=Sequence derived from alignment at F-serratus_M_contig1527:13797..17362+ (Fucus serratus male)
CCACCGCCTCCACCGCCTCCACCAGGGGGACCTCCGGGGGGTGACGATCC
CTCCAAGCAGGGATGCAACAAGCGGCAGCCGGAGCTCGCTCCGAGACCTT
CCAAGCGGACGAGGACAATCCCCGAGCCGCTGCTCCTGCATCAACGGCGG
CTCGAGAACAGCAGAGGAGGTGCGTCCTTTTGCACGAATCCCACGTAGTT
AGAGCGTGACTATTTGTCAAGATCGTTCTGTTAGAGAGATGATCTTGCTG
TGCTGGTCGACTTAGCACGGCAAAGTGCCTTGAAAAACTCTGAGGCATGT
TGGTTGGATTCTCATGGCGGTAAAGTGCTGAATGTTGTCGAGATCGTCCA
GAAGTGAAGAGCGAATCCTTTCCTACAACCGTACCTTATCCTCTATCTCA
TGGATCTGCGTAGTCAGCCATGCGTGGGGGAGCTGTGTGGGATCCACGAG
GGATCGGTTAAGATGGAGGCCTGCAATGTAATGCGTATCAATACAGGATT
CACTGGCAGTAAATAAATGACTATTAACAACTCCACGGCAGATAGATTCG
TTTGCCCACTCAGTTCCCGACAAAATCAATGTCACCATCTCACCCAGAAT
CGAGCTGCAGCACTGATGACGGTGGTCAAGCAGAGGCAGGCGGCAGTGTA
AAAGCTTTCAAGAGAGATGGTGCAGAGGAAGACAAATGCACCATCTGCCT
CGACAATCTACCCGACGTGGGGCGGGGGTCGTCGGTTGCGTGAGTCCCGA
AAACTAGCTCCTGCTCAAAAATGTGCATATACTAGTGCTGTACTGTGGAT
GTATTCAAGAGTCGTTTTTCGGTATAAACGCCAAAATTTCTTAAATTTCT
CTTCCAGTTCTAATTTGGAAACGAATGTTCGAAAGATTGGAAACTAATTT
AAACGGCACTTCCGCGGTTTGACTGTAGAGAACAAGCTGAAGCTGACTCA
TACTCTTGAGCCCGAGGACCACCAGCAGCACACTATTAATTGCAACGGCC
GTGTCAAGTTTGAGGCAAGGCGGTGGCCCGTCACGACCACAGTGGCATCG
ACGTGGGAGGGCAAGCGGTTCGGATCTCTTTATTGGCCACAGTTGATGCT
AACTTTAAGGTCACAGGGTGTTTGTTTAAGTCTATTAATAAGCTCTCAGC
AGGTTGAAACGAACGTTTTGGGGGTAGACTAAATGGGTACCTCCGTCCGT
TTCCAAATTTTGGCATTTTCCGTCGGTGTTCAAACCGACTCTAAATAATT
GTCTTGGTTAAATTAAAGTAAAGAATGAGGCAAAAACGTAAGAGGAGTAC
TGCTTAGTCTATACTTAACTACTTGGTATACATAGATAGACCTATATACT
TTTGCATACTCTAACTCTACTCGCAAGAGACGCCTATAATAGTAATAGTT
TGTCCGCCCGGAGCTTTTGTACCCCACAAGCTCTGTGACAGACATATTAT
GACTATGTTACCTTTACGGTGCGGTGCGTGTTTTCTCTCCGAAAAATAAA
AAAAATCCTGTTTGTGCCGAACCAGGGATAATTATAATTCCCAAGTTGCG
TTGGTACTGGTGTACCTTACCGTATGCAAGTATGCAAGTATGCGAGTATG
CAAATATCCCTTGTCTCTCTCGCCCCCGGACTGAGGGAGCTGTGAATCGC
TCGCTGGTTGATTCGTTCCGTATCTCATGCAGGGGCACGTTTTCTGCTTC
ATATGTATACACACCTGGCTGAAGCAGCAGAGCACGTGTCCTTTATGCAA
CACGAAAATCAAGTCGATTGTCAAAACCCTCACTGACGAGGAAATCGCTC
GTCACGAAGCGAGGGAAGAGGTGAGGCACTTACTTACGTGCGCACTGTAC
CATACCTGAACCGAATGTATTTCGGGTGGTATTATCGTTTGTAGAGCTTG
TTCGTGGAACGTTTAGGAGGCGTTAGGTTAGCCTGAGCGATGCCCAAATG
CTAGGTGACGCTTTCACTCCCTACCTCTAGTTTACGTGTTGTTGGTGTTG
GTGTTAACGGTAGGTTGTGGAAAATGGGACAAGCGGAAGCGTCTGATACT
GCTGCCTGCTGTGTACTGCAGAAACGTCAAAACGAGCTCTGCTAGGCTTG
AGACTCTAAGTCTTATCAGACGTATCATTGCCGTTCGCTAGATGTGTTCC
ATGATTTCTGTCGGAACGCACGGAATCCAATCGAAACCGTGTACCCTTGT
ATCATGACAGAAGCCCGGAAAAGCCACATTTTTGGAGAGAAAGCGCCACA
AGAAGCGAAAGAGGCGTTTCAAGACATACGTGAGAAACGTAGAACAGTAC
CGCGTTGTTTTGTTGTTTGTTGGAAGTAGTAACTGTCCGGCGTGGCGTGG
CGTGGGGAGTGGAGTGGAGTGGAGTGGAGTCCACATGCTTTCCTTTTCAT
GTTGATGCTATTAATACCACACCGACCAGCAATCTAAAGATGCCCGAGAC
CCCGTTTGTTACTATTAATAGAGCCGCCTTTACGTGCAAACGTCTAAACG
ATCAATTTTATTGGCGATATATATATATATCCTCCTTTCCCTTATGCCAT
GTCTCATGTTACCGTTGAATCGCTGGCCTGCCCTCGTGACACGTGGCACT
GATTCGGCGACGCGTGACCATGTCATACCGCCGTCCTGAAACGCAAAACG
TGGACGCCTTCCATCAGGAGGGGGGCGTCGTTACCAAGACGATCCGTATC
CGACACAGCGAGCAGGCGAAAAGAAATCGCCTGGAGGCGCGCAACGAGCT
TCACCCCCAGGTGAGGATTTCCTCGCGATCGAATAACTTGAGAATATTCT
TGGATCATTCCCCCAGTAATATGGTCTCATTTCCCCTTTGATCACGATTA
CGATTACGGAGAACGTGCTGTTCTTAATTTGTATCGTAGGTTGTGATTGA
TCCCTCGATATCCCTCGACATTGCAAGCGCGTCTAGATTCTCGATTCCTG
CTGACGGAAGCTAGTACTTCTCGCTGTGAACCGACAACGTTTTGGCACTG
TTATTGGAGTTGACTGTACTGTACTATTCAATATTAATAGTATATCCCAA
GGGTGGTGGTGCACATCCCGTCTGTACAATTAAATTAATGCTGTATCCCG
GGATAATTTATAGGAGTATCTGGCAGATCAGGTCCATGTCCCTCTAGTTC
ATGTTGTTATAGGCCTATAGTCTATATATTCAAGATCTAGAAACGCTTAG
AGCTAAAAATACTGATGCTGTTATTAAAGGGTACCCATTATTAAATAATC
AATCCGCCTTGTCTTTCGCTGCCTCACCAACGCGGCCTCAGGCTCCTGGC
GGAGAATTACACAACAATCCTGGCATTCTCGCTGCCATCATTCGACAGTA
TGTCCGCGAGTGGTTCCGATAAGGATGATACCGCCTCAGCAACAACCTGG
ATTCACATCCGACTTGCACTTCAAGTCGGATGGATGTATGAATGGGTCGC
GATTGCTGTCGCAGAAGAGGCACCGAGCTCGAGAGGTACCAAGCGCCCAT
TGATCTGGGACGAAGAAGCTGCGTTTGTATTGGATCTACAACAAAAGGCT
TTTAGAGCTGCTTGTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1527:13797..17362+

>mRNA_F-serratus_M_contig1527.3596.1 ID=mRNA_F-serratus_M_contig1527.3596.1|Name=mRNA_F-serratus_M_contig1527.3596.1|organism=Fucus serratus male|type=CDS|length=870bp|location=Sequence derived from alignment at F-serratus_M_contig1527:13797..17362+ (Fucus serratus male)
ATGCACCATCTGCCTCGACAATCTACCCGACGTGGGGCGGGGGTCGTCGG
TTGCATGCACCATCTGCCTCGACAATCTACCCGACGTGGGGCGGGGGTCG
TCGGTTGCGGGCACGTTTTCTGCTTCATATGTATACACACCTGGCTGAAG
CAGCAGAGCACGTGTCCTTTATGCAACACGAAAATCAAGTCGATTGTCAA
AACCCTCACTGACGAGGAAATCGCTCGTCACGAAGCGAGGGAAGAGGGGC
ACGTTTTCTGCTTCATATGTATACACACCTGGCTGAAGCAGCAGAGCACG
TGTCCTTTATGCAACACGAAAATCAAGTCGATTGTCAAAACCCTCACTGA
CGAGGAAATCGCTCGTCACGAAGCGAGGGAAGAGAAGCCCGGAAAAGCCA
CATTTTTGGAGAGAAAGCGCCACAAGAAGCGAAAGAGGCGTTTCAAGACA
TACAAGCCCGGAAAAGCCACATTTTTGGAGAGAAAGCGCCACAAGAAGCG
AAAGAGGCGTTTCAAGACATACGAGGGGGGCGTCGTTACCAAGACGATCC
GTATCCGACACAGCGAGCAGGCGAAAAGAAATCGCCTGGAGGCGCGCAAC
GAGCTTCACCCCCAGGAGGGGGGCGTCGTTACCAAGACGATCCGTATCCG
ACACAGCGAGCAGGCGAAAAGAAATCGCCTGGAGGCGCGCAACGAGCTTC
ACCCCCAGGCTCCTGGCGGAGAATTACACAACAATCCTGGCATTCTCGCT
GCCATCATTCGACAGTATGTCCGCGAGTGGTTCCGATAAGCTCCTGGCGG
AGAATTACACAACAATCCTGGCATTCTCGCTGCCATCATTCGACAGTATG
TCCGCGAGTGGTTCCGATAA
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