mRNA_F-serratus_M_contig1525.3595.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1525.3595.1
Unique NamemRNA_F-serratus_M_contig1525.3595.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1525.3595.1 vs. uniprot
Match: D7FIE1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 8.230e-6
Identity = 33/90 (36.67%), Postives = 43/90 (47.78%), Query Frame = 1 
Query:   37 GKKLRAAAHSMPRTGWMMSRTESSEPGAAAIDGLSEWPAQMM----VYCTQHAPDGMFDVYSSKCRTEGCVKWPSYGVAGTKKVEYCAQH 294
            G+++R A            RT +SEPG     G SE  A       +   +H        +   C+  GC KWPSYG AG+KKVE+CAQH
Sbjct:   51 GRRMRRARSLTQEEPSNRQRT-ASEPGRREQSGGSEATAAPQTSTPMIARRHGQQ-----WRPCCKEHGCTKWPSYGGAGSKKVEFCAQH 134
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1525.3595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIE1_ECTSI8.230e-636.67EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1525contigF-serratus_M_contig1525:195071..195364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929509.9480371-CDS-F-serratus_M_contig1525:195070..1953641622929509.9480371-CDS-F-serratus_M_contig1525:195070..195364Fucus serratus maleCDSF-serratus_M_contig1525 195071..195364 +
1690962885.4203706-CDS-F-serratus_M_contig1525:195070..1953641690962885.4203706-CDS-F-serratus_M_contig1525:195070..195364Fucus serratus maleCDSF-serratus_M_contig1525 195071..195364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1525.3595.1prot_F-serratus_M_contig1525.3595.1Fucus serratus malepolypeptideF-serratus_M_contig1525 195071..195364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1525.3595.1

>prot_F-serratus_M_contig1525.3595.1 ID=prot_F-serratus_M_contig1525.3595.1|Name=mRNA_F-serratus_M_contig1525.3595.1|organism=Fucus serratus male|type=polypeptide|length=98bp
GQHAIHGTFEKEGKKLRAAAHSMPRTGWMMSRTESSEPGAAAIDGLSEWP
AQMMVYCTQHAPDGMFDVYSSKCRTEGCVKWPSYGVAGTKKVEYCAQH
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mRNA from alignment at F-serratus_M_contig1525:195071..195364+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1525.3595.1 ID=mRNA_F-serratus_M_contig1525.3595.1|Name=mRNA_F-serratus_M_contig1525.3595.1|organism=Fucus serratus male|type=mRNA|length=294bp|location=Sequence derived from alignment at F-serratus_M_contig1525:195071..195364+ (Fucus serratus male)
GGGCAACACGCTATACACGGGACGTTCGAAAAGGAAGGCAAAAAATTACG
GGCTGCTGCGCATAGTATGCCCCGGACGGGGTGGATGATGTCAAGAACAG
AAAGTTCAGAACCCGGGGCTGCTGCAATCGACGGTCTTTCGGAGTGGCCG
GCACAAATGATGGTGTACTGTACACAGCACGCACCGGACGGAATGTTCGA
CGTCTACAGCAGCAAGTGCAGAACCGAAGGCTGCGTCAAGTGGCCGTCGT
ATGGAGTGGCAGGTACGAAAAAAGTGGAGTACTGTGCACAGCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1525:195071..195364+

>mRNA_F-serratus_M_contig1525.3595.1 ID=mRNA_F-serratus_M_contig1525.3595.1|Name=mRNA_F-serratus_M_contig1525.3595.1|organism=Fucus serratus male|type=CDS|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig1525:195071..195364+ (Fucus serratus male)
GGGCAACACGCTATACACGGGACGTTCGAAAAGGAAGGCAAAAAATTACG
GGCTGCTGCGCATAGTATGCCCCGGACGGGGTGGATGATGTCAAGAACAG
AAAGTTCAGAACCCGGGGCTGCTGCAATCGACGGTCTTTCGGAGTGGCCG
GCACAAATGATGGTGTACTGTACACAGCACGCACCGGACGGAATGTTCGA
CGTCTACAGCAGCAAGTGCAGAACCGAAGGCTGCGTCAAGTGGCCGTCGT
ATGGAGTGGCAGGTACGAAAAAAGTGGAGTACTGTGCACAGCACGGGCAA
CACGCTATACACGGGACGTTCGAAAAGGAAGGCAAAAAATTACGGGCTGC
TGCGCATAGTATGCCCCGGACGGGGTGGATGATGTCAAGAACAGAAAGTT
CAGAACCCGGGGCTGCTGCAATCGACGGTCTTTCGGAGTGGCCGGCACAA
ATGATGGTGTACTGTACACAGCACGCACCGGACGGAATGTTCGACGTCTA
CAGCAGCAAGTGCAGAACCGAAGGCTGCGTCAAGTGGCCGTCGTATGGAG
TGGCAGGTACGAAAAAAGTGGAGTACTGTGCACAGCAC
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