mRNA_F-serratus_M_contig1525.3594.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1525.3594.1
Unique NamemRNA_F-serratus_M_contig1525.3594.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1525.3594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1525contigF-serratus_M_contig1525:109445..109816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929509.8949442-CDS-F-serratus_M_contig1525:109444..1098161622929509.8949442-CDS-F-serratus_M_contig1525:109444..109816Fucus serratus maleCDSF-serratus_M_contig1525 109445..109816 +
1690962885.4105918-CDS-F-serratus_M_contig1525:109444..1098161690962885.4105918-CDS-F-serratus_M_contig1525:109444..109816Fucus serratus maleCDSF-serratus_M_contig1525 109445..109816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1525.3594.1prot_F-serratus_M_contig1525.3594.1Fucus serratus malepolypeptideF-serratus_M_contig1525 109445..109816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1525.3594.1

>prot_F-serratus_M_contig1525.3594.1 ID=prot_F-serratus_M_contig1525.3594.1|Name=mRNA_F-serratus_M_contig1525.3594.1|organism=Fucus serratus male|type=polypeptide|length=124bp
GETIACESDGEFGQYCACTVLGVVCGVLWARSSSSFAYCWIASCSSSVTC
IITRPRMSSRINLSILLRPRSRSDRKIASLNSSTSSFKKVVYSSGVKGRP
SRSNTSARSEPVILRQAATSTFVK
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mRNA from alignment at F-serratus_M_contig1525:109445..109816+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1525.3594.1 ID=mRNA_F-serratus_M_contig1525.3594.1|Name=mRNA_F-serratus_M_contig1525.3594.1|organism=Fucus serratus male|type=mRNA|length=372bp|location=Sequence derived from alignment at F-serratus_M_contig1525:109445..109816+ (Fucus serratus male)
GGTGAAACGATAGCATGCGAATCTGACGGCGAATTTGGACAGTACTGTGC
GTGTACGGTACTGGGAGTAGTCTGTGGCGTCCTGTGGGCTCGCTCCTCTA
GCTCCTTCGCGTACTGTTGGATCGCGTCGTGTTCGTCGTCCGTGACCTGC
ATTATTACTCGTCCCCGTATGAGCTCTCGCATAAATCTGTCTATCCTCTT
GAGGCCCCGTTCTCGTTCAGATAGAAAGATAGCATCTCTCAACTCGTCCA
CCTCATCCTTCAAAAAAGTAGTATATTCTTCAGGCGTGAAGGGTCGGCCG
TCCCGTTCCAACACTTCGGCGCGATCGGAACCAGTCATCCTTCGCCAAGC
AGCCACCTCTACTTTCGTCAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1525:109445..109816+

>mRNA_F-serratus_M_contig1525.3594.1 ID=mRNA_F-serratus_M_contig1525.3594.1|Name=mRNA_F-serratus_M_contig1525.3594.1|organism=Fucus serratus male|type=CDS|length=744bp|location=Sequence derived from alignment at F-serratus_M_contig1525:109445..109816+ (Fucus serratus male)
GGTGAAACGATAGCATGCGAATCTGACGGCGAATTTGGACAGTACTGTGC
GTGTACGGTACTGGGAGTAGTCTGTGGCGTCCTGTGGGCTCGCTCCTCTA
GCTCCTTCGCGTACTGTTGGATCGCGTCGTGTTCGTCGTCCGTGACCTGC
ATTATTACTCGTCCCCGTATGAGCTCTCGCATAAATCTGTCTATCCTCTT
GAGGCCCCGTTCTCGTTCAGATAGAAAGATAGCATCTCTCAACTCGTCCA
CCTCATCCTTCAAAAAAGTAGTATATTCTTCAGGCGTGAAGGGTCGGCCG
TCCCGTTCCAACACTTCGGCGCGATCGGAACCAGTCATCCTTCGCCAAGC
AGCCACCTCTACTTTCGTCAAAGGTGAAACGATAGCATGCGAATCTGACG
GCGAATTTGGACAGTACTGTGCGTGTACGGTACTGGGAGTAGTCTGTGGC
GTCCTGTGGGCTCGCTCCTCTAGCTCCTTCGCGTACTGTTGGATCGCGTC
GTGTTCGTCGTCCGTGACCTGCATTATTACTCGTCCCCGTATGAGCTCTC
GCATAAATCTGTCTATCCTCTTGAGGCCCCGTTCTCGTTCAGATAGAAAG
ATAGCATCTCTCAACTCGTCCACCTCATCCTTCAAAAAAGTAGTATATTC
TTCAGGCGTGAAGGGTCGGCCGTCCCGTTCCAACACTTCGGCGCGATCGG
AACCAGTCATCCTTCGCCAAGCAGCCACCTCTACTTTCGTCAAA
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