mRNA_F-serratus_M_contig1524.3593.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1524.3593.1
Unique NamemRNA_F-serratus_M_contig1524.3593.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1524.3593.1 vs. uniprot
Match: A0A6H5J8X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8X6_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.560e-38
Identity = 75/97 (77.32%), Postives = 85/97 (87.63%), Query Frame = 2
Query:  347 MRGMGKGELLDLLAKEGVAAADQLRKDRAEARDAREMVAATRKALAAASTQGRTNEGRRTFQTILTACSFDGDG---PSRVTAKRKAELLGVHPDHL 628
            MR M +GELLD LA +GVAAAD LRK++A+ARDAR+MVA T+KALAAASTQGRTNEGRRTFQTILTA +FDGD    PSRVT+KRKAELLGVHP+H 
Sbjct:    1 MRSMAEGELLDFLAGQGVAAADLLRKEQADARDARKMVAGTKKALAAASTQGRTNEGRRTFQTILTAAAFDGDDGDEPSRVTSKRKAELLGVHPEHF 97          
BLAST of mRNA_F-serratus_M_contig1524.3593.1 vs. uniprot
Match: A0A6H5KDQ3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ3_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 7.430e-37
Identity = 79/101 (78.22%), Postives = 89/101 (88.12%), Query Frame = 2
Query:  335 FLAAMRGMGKGELLDLLAKEGVAAADQLRKDRAEARDAREMVAATRKALAAASTQGRTNEGRRTFQTILTACSFDGDG---PSRVTAKRKAELLGVHPDHL 628
            FLAAMR M +GELLD LA +GVAAAD LRK++A+ARDAR+MVA T+KALAAASTQGRTNEGRRTFQTILTA +FDGD    PSRVT+KRKAELLGVHP+H 
Sbjct:  151 FLAAMRSMAEGELLDFLAGQGVAAADLLRKEQADARDARKMVAGTKKALAAASTQGRTNEGRRTFQTILTAAAFDGDDGDEPSRVTSKRKAELLGVHPEHF 251          
BLAST of mRNA_F-serratus_M_contig1524.3593.1 vs. uniprot
Match: A0A6H5JJC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 6.480e-25
Identity = 59/98 (60.20%), Postives = 76/98 (77.55%), Query Frame = 2
Query:  335 FLAAMRGMGKGELLDLLAKEGVAAADQLRKDRAEARDAREMVAATRKALAAASTQGRTNEGRRTFQTILTACSFDGDGPSRVTAKRKAELLGVHPDHL 628
            F+AAMR M   ELL  LA+  V AAD+LR+   +  +ARE+ +A R+AL  A+ QGRT EGRRTFQT+LTA ++DGDGPS+VTAKRK+E+ GVHP+HL
Sbjct:  155 FVAAMRAMTTTELLRCLAELKVPAADKLRE---QLEEARELQSACRRALKDAAIQGRTKEGRRTFQTLLTAVAYDGDGPSKVTAKRKSEIFGVHPEHL 249          
BLAST of mRNA_F-serratus_M_contig1524.3593.1 vs. uniprot
Match: A0A6H5JIQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ3_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.470e-21
Identity = 54/98 (55.10%), Postives = 74/98 (75.51%), Query Frame = 2
Query:  335 FLAAMRGMGKGELLDLLAKEGVAAADQLRKDRAEARDAREMVAATRKALAAASTQGRTNEGRRTFQTILTACSFDGDGPSRVTAKRKAELLGVHPDHL 628
            F+AAMR M   ELL  LA+  V AAD+LR+   +  +AR++ +A R+AL  A+ QGR  EGRR FQT+LTA ++DG+GPS+VTAKRK+E+ G+HP+HL
Sbjct:   44 FVAAMRAMTTTELLRCLAELKVPAADKLRE---QLEEARKLQSACRRALKDAAIQGRAKEGRRAFQTLLTAVAYDGNGPSKVTAKRKSEIFGIHPEHL 138          
BLAST of mRNA_F-serratus_M_contig1524.3593.1 vs. uniprot
Match: A0A6H5JIF1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIF1_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.780e-21
Identity = 62/106 (58.49%), Postives = 75/106 (70.75%), Query Frame = 1
Query:   10 RGVELTTKLIDPKGGKKGA-AATNTGSCEASEGALSTLALEKAEAIMAGKREAARRQGVPQSGG-GRSWADNQMCCPVIASIKGSYEGEGTRTRNAASNAGAAAGP 321
            RG++L T L+D K  +KG  AA NTG CEASE  LS LA EKA+AIMAGKR AAR+ G+PQ GG G   AD  M CPVIA+I+GS+EG   RTR++A+   AA  P
Sbjct:   37 RGIKLRTTLLDSK--RKGRKAAENTGYCEASEVVLSNLAREKADAIMAGKRNAARKNGIPQGGGSGGCGADRVMSCPVIAAIQGSHEG--LRTRSSATTNPAANNP 138          
BLAST of mRNA_F-serratus_M_contig1524.3593.1 vs. uniprot
Match: A0A6H5JIB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.770e-20
Identity = 65/117 (55.56%), Postives = 79/117 (67.52%), Query Frame = 1
Query:   10 RGVELTTKLIDPKGGKKGA-AATNTGSCEASEGALSTLALEKAEAIMAGKREAARRQGVPQSGG-GRSWADNQMCCPVIASIKGSYEGEGTRTRNAASNAGAAAGPTEVTVSCCDER 354
            RG++L T L+D K  +KG  AA NTG CEASE  LS LA EKA+AIMAGKR AAR+ G+PQ GG G   AD  M CPVIA+I+GS+EG   RTR++A+   AA  P    V C + R
Sbjct:   37 RGIKLRTTLLDSK--RKGRKAAENTGYCEASEVVLSNLAREKADAIMAGKRNAARKNGIPQGGGSGGCGADRVMSCPVIAAIQGSHEG--LRTRSSATTNPAANNPE---VKCVETR 146          
BLAST of mRNA_F-serratus_M_contig1524.3593.1 vs. uniprot
Match: A0A6H5JR76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR76_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 6.910e-16
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 KAGRGVELTTKLIDPKGGKKGAAATNTGSCEASEGALSTLALEKAEAIMAGKREAARRQGVPQSGGGRSWADNQMCCPVI 240
            K GRGVE+TTKL DPK  K+ AAA N+G+ EA E  LS +A EKA+ IM GKREAARR GVPQ+ G    AD+ M CPVI
Sbjct:  104 KEGRGVEITTKLFDPKAVKR-AAARNSGTSEACEADLSKVAREKADEIMKGKREAARRAGVPQARGQGGGADSHMSCPVI 182          
BLAST of mRNA_F-serratus_M_contig1524.3593.1 vs. uniprot
Match: A0A6H5KYP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP1_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.130e-15
Identity = 49/80 (61.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 KAGRGVELTTKLIDPKGGKKGAAATNTGSCEASEGALSTLALEKAEAIMAGKREAARRQGVPQSGGGRSWADNQMCCPVI 240
            K GRGVE+TTKL D K GK+ AAA N+G+ EA E  LS +A EKA+ IM GKRE ARR GVPQ+ G    AD+ M CPVI
Sbjct:   35 KEGRGVEITTKLFDLKAGKR-AAARNSGTSEACEADLSKVAREKADKIMKGKREGARRAGVPQARGRGGGADSHMSCPVI 113          
BLAST of mRNA_F-serratus_M_contig1524.3593.1 vs. uniprot
Match: A0A6H5JIV9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIV9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 5.030e-14
Identity = 45/92 (48.91%), Postives = 66/92 (71.74%), Query Frame = 2
Query:  347 MRGMGKGELLDLLAKEGVAAADQLRKDRAEARDAREMVAATRKALAAASTQGRTNEGRRTFQTILTACSFDGD-GPSRVTAKRKAELLGVHP 619
            M+ M    LL  L++EG+ AA +L++ + +  DAR+  AA+R+AL  A+  GRTN+GR+T+QTILTAC++DGD G   + + RKAE+LGV P
Sbjct:    1 MKSMTSEALLACLSQEGIPAAQELQELQLQLEDARQFQAASREALKDAAVFGRTNQGRQTYQTILTACAYDGDEGTQALPSYRKAEILGVDP 92          
BLAST of mRNA_F-serratus_M_contig1524.3593.1 vs. uniprot
Match: A0A6H5KIV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIV8_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.330e-10
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  347 MRGMGKGELLDLLAKEGVAAADQLRKDRAEARDAREMVAATRKALAAASTQGRTNEGRRTFQTILTACSFDGD-GPSRVTAKRKAELLGVHP 619
            M+ M    LL  L   GV AA ++ ++ A   DAR+  AA+R AL  A+  GRTN GR+T+QTILTA ++DGD G S +   RKAE+LGV P
Sbjct:    1 MKAMNAETLLQSLIDNGVPAAQEIHQELA---DARQFQAASRAALKDAAVFGRTNMGRQTYQTILTAHAYDGDEGASTLPGYRKAEILGVDP 89          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1524.3593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5J8X6_9PHAE1.560e-3877.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDQ3_9PHAE7.430e-3778.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JJC8_9PHAE6.480e-2560.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIQ3_9PHAE1.470e-2155.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIF1_9PHAE2.780e-2158.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JIB0_9PHAE5.770e-2055.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR76_9PHAE6.910e-1662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYP1_9PHAE3.130e-1561.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIV9_9PHAE5.030e-1448.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KIV8_9PHAE3.330e-1048.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1524contigF-serratus_M_contig1524:193345..194365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size629
Cds size369
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1524.3593.1prot_F-serratus_M_contig1524.3593.1Fucus serratus malepolypeptideF-serratus_M_contig1524 193605..194365 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929508.2368376-UTR-F-serratus_M_contig1524:193344..1936041622929508.2368376-UTR-F-serratus_M_contig1524:193344..193604Fucus serratus maleUTRF-serratus_M_contig1524 193345..193604 -
1690962884.6679602-UTR-F-serratus_M_contig1524:193344..1936041690962884.6679602-UTR-F-serratus_M_contig1524:193344..193604Fucus serratus maleUTRF-serratus_M_contig1524 193345..193604 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929508.253075-CDS-F-serratus_M_contig1524:193604..1936421622929508.253075-CDS-F-serratus_M_contig1524:193604..193642Fucus serratus maleCDSF-serratus_M_contig1524 193605..193642 -
1690962884.6760697-CDS-F-serratus_M_contig1524:193604..1936421690962884.6760697-CDS-F-serratus_M_contig1524:193604..193642Fucus serratus maleCDSF-serratus_M_contig1524 193605..193642 -
1622929508.2696266-CDS-F-serratus_M_contig1524:194034..1943651622929508.2696266-CDS-F-serratus_M_contig1524:194034..194365Fucus serratus maleCDSF-serratus_M_contig1524 194035..194365 -
1690962884.6834714-CDS-F-serratus_M_contig1524:194034..1943651690962884.6834714-CDS-F-serratus_M_contig1524:194034..194365Fucus serratus maleCDSF-serratus_M_contig1524 194035..194365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1524.3593.1

>prot_F-serratus_M_contig1524.3593.1 ID=prot_F-serratus_M_contig1524.3593.1|Name=mRNA_F-serratus_M_contig1524.3593.1|organism=Fucus serratus male|type=polypeptide|length=123bp
KAGRGVELTTKLIDPKGGKKGAAATNTGSCEASEGALSTLALEKAEAIMA
GKREAARRQGVPQSGGGRSWADNQMCCPVIASIKGSYEGEGTRTRNAASN
AGAAAGPTEVTVSCCDERYGEG*
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mRNA from alignment at F-serratus_M_contig1524:193345..194365-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1524.3593.1 ID=mRNA_F-serratus_M_contig1524.3593.1|Name=mRNA_F-serratus_M_contig1524.3593.1|organism=Fucus serratus male|type=mRNA|length=1021bp|location=Sequence derived from alignment at F-serratus_M_contig1524:193345..194365- (Fucus serratus male)
AAGGCGGGCCGCGGCGTCGAGCTTACTACCAAGCTCATCGACCCTAAGGG TGGCAAAAAGGGCGCAGCTGCTACAAATACCGGCTCCTGTGAGGCTTCCG AAGGAGCTTTGTCCACGCTGGCCCTGGAGAAGGCTGAGGCGATCATGGCC GGCAAACGAGAGGCAGCTCGGAGACAGGGCGTACCACAAAGCGGCGGGGG TCGCTCTTGGGCAGACAATCAAATGTGCTGCCCCGTCATCGCGTCCATCA AGGGTTCGTACGAGGGCGAGGGCACGAGGACTCGAAATGCTGCCAGCAAT GCCGGGGCGGCCGCTGGCCCAACAGAAGTAAGCGGTGTATGTAATACGAT ATACGTATCCCTGTTCCTGCTGCCGCTGCTGCTGTATACTGCTGCTGCCG CTGCTACACTGTTGCTGTATACTGCTGCTGCTTTCCCACCGTGCTGTCAT TTGTTGCTCTCCAGCTGCTATGCACGTCTTCCTTCTCTTCCGTAGACATC CTTCGTGGCATTACTCTCTGTAAATTGCTTCCACACCCCCCCTTCTGTCG GCTGGAGTGCACAATCCACCTGTGTTTTGCACCCTTCCCAATAGTGTCGA GAAAGTTCCGATGCTGTGTTCAGCGCGTCGAGCATGCCGCCAATTGTACC CCTACCCTGCGCTCTCTTCGCTGCTGTGATACGTGACCCGTAGCCGCATC CAGACTGGAGAGACACTTCTGAGCCGTTTCTTGCTGCGATGAGAGGTATG GGGAAGGGTGAGCTTTTGGATCTTCTGGCGAAAGAAGGAGTAGCTGCCGC GGATCAGCTTCGCAAGGACCGGGCAGAGGCGCGTGATGCGCGGGAGATGG TGGCGGCCACTAGGAAAGCTCTTGCGGCAGCATCGACACAGGGGCGCACC AACGAAGGGAGGAGAACGTTTCAGACGATCCTGACGGCTTGCTCGTTTGA CGGGGATGGGCCTTCAAGGGTGACGGCCAAGCGCAAGGCCGAGCTTCTCG GAGTCCACCCAGACCACTTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1524:193345..194365-

>mRNA_F-serratus_M_contig1524.3593.1 ID=mRNA_F-serratus_M_contig1524.3593.1|Name=mRNA_F-serratus_M_contig1524.3593.1|organism=Fucus serratus male|type=CDS|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig1524:193345..194365- (Fucus serratus male)
AAGGCGGGCCGCGGCGTCGAGCTTACTACCAAGCTCATCGACCCTAAGGG
TGGCAAAAAGGGCGCAGCTGCTACAAATACCGGCTCCTGTGAGGCTTCCG
AAGGAGCTTTGTCCACGCTGGCCCTGGAGAAGGCTGAGGCGATCATGGCC
GGCAAACGAGAGGCAGCTCGGAGACAGGGCGTACCACAAAGCGGCGGGGG
TCGCTCTTGGGCAGACAATCAAATGTGCTGCCCCGTCATCGCGTCCATCA
AGGGTTCGTACGAGGGCGAGGGCACGAGGACTCGAAATGCTGCCAGCAAT
GCCGGGGCGGCCGCTGGCCCAACAGAAGTAAAAGGCGGGCCGCGGCGTCG
AGCTTACTACCAAGCTCATCGACCCTAAGGGTGGCAAAAAGGGCGCAGCT
GCTACAAATACCGGCTCCTGTGAGGCTTCCGAAGGAGCTTTGTCCACGCT
GGCCCTGGAGAAGGCTGAGGCGATCATGGCCGGCAAACGAGAGGCAGCTC
GGAGACAGGGCGTACCACAAAGCGGCGGGGGTCGCTCTTGGGCAGACAAT
CAAATGTGCTGCCCCGTCATCGCGTCCATCAAGGGTTCGTACGAGGGCGA
GGGCACGAGGACTCGAAATGCTGCCAGCAATGCCGGGGCGGCCGCTGGCC
CAACAGAAGTAACCGTTTCTTGCTGCGATGAGAGGTATGGGGAAGGGTGA
CCGTTTCTTGCTGCGATGAGAGGTATGGGGAAGGGTGA
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