mRNA_F-serratus_M_contig1524.3588.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1524.3588.1 vs. uniprot
Match: D7FSC9_ECTSI (Putative transcriptional regulator n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC9_ECTSI) HSP 1 Score: 476 bits (1224), Expect = 2.410e-160 Identity = 270/465 (58.06%), Postives = 326/465 (70.11%), Query Frame = 2
Query: 71 VSKAVYRSVLRYARRFDKNIAAKALINQHGIVTPPSDELLVEADRGDRRLYAAGLDVLVGTQFLMSPERMTWSLQRLIKNLRRADNSNLEVITERTTT--AKTEDGSLPLSDLSDLSEEPRVGQIQQEDGAAAQSVEAFFPGALRGVHAADKVNAGFAALRQLSSTWALAGSLGLT-----GKKRSSVNRAKRKRKKIVPTKMTM-RAQRALRHHERRSGGSREQPRR---PAPGVAGIKLSE--------GVVEPTNVPAKGVFLISHPVAGLHAPGDIFHRSVVLLVHHYHGGSYGLVVNKERGETLEEAISPDSAPLASEALRRVLHNPVRSGGPVMSRLAWLHHHEEVGGVPLSEDSHDPVFFCGTMEKASELLGEGAAEPTDFSLLLGASMWASGQLQGELDRGMWIMAKAPASLALEGGENLWRQMLDAMGGPYAELARVPHGNSWAQIGARNLPSDWP 1408
V KAVYR+VLR AR FDKNIAAKALI +HGIV PP E +A GDRRLYAA L+V+VG+ + PER+ WSLQRLI+ +R AD +NLEV+ +R AK +G +PL D + + ++D A S+E FFPGAL+GV ADKV AGFAA+R+LSS WALA SLGLT + S V R +RK K P T RA R LRH ER R P G +L VVEPT PAKGV+LISHP++ L+AP ++FHRSVVLLV H GSYGLVVNK++GETLEEA+ D+ PLAS+AL++VL NPVR GGPVMSRLAWLH H+EVGGVPL+E + PVFFCG MEKA+ELL +GAA+P DFSL++GAS W +GQLQGEL+ G+WIMAKAPAS AL GGE++WR ML+AMGGPYA +ARVPHG WA+ G + PSDWP
Sbjct: 4 VEKAVYRAVLRKARLFDKNIAAKALIQRHGIVRPPLTES--DAIGGDRRLYAAALEVVVGSHCHVRPERLAWSLQRLIRTIRMADQNNLEVVADRAAENEAKEAEG-VPLEDRT----------VWEQDAMVAISLEIFFPGALKGVDGADKVGAGFAAIRELSSKWALAESLGLTEYLENNGQTSCVKRRRRKGKVAGPRNTTTKRALRVLRHQERXXXXXXXXXXRSTSPLSPGRGFELDTRNSLARPGDVVEPTGTPAKGVYLISHPLSFLYAPEEMFHRSVVLLVDHSPLGSYGLVVNKDKGETLEEALCEDALPLASDALQQVLKNPVRVGGPVMSRLAWLHPHKEVGGVPLAEGAEKPVFFCGKMEKAAELLTKGAAKPADFSLVVGASAWDAGQLQGELNHGLWIMAKAPASFALAGGEDMWRDMLEAMGGPYAAMARVPHGRQWARTGVKISPSDWP 455
BLAST of mRNA_F-serratus_M_contig1524.3588.1 vs. uniprot
Match: A0A484DYD7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DYD7_BRELC) HSP 1 Score: 113 bits (282), Expect = 7.670e-24 Identity = 73/208 (35.10%), Postives = 109/208 (52.40%), Query Frame = 2
Query: 752 IKLSEGVVEPTNVPAKGVFLISHPVAGLHAPGDIFHRSVVLLVHH-YHGGSYGLVVNKERGETLEEAISPDSAPLASEALRRVLHNPVRSGGPVMSRLAW-LHHHEEVGG----VPLSEDSHDPVFFCGT-MEKASELLGEGAAEPTDFSLLLGASMWASGQLQGELDRGMWIMAKAPASLALEGGENLWRQMLDAMGGPYAELARVP 1354
++L+E VV GVFL++HP+ IF RSVV+L H G + G +VNK +TL + S R + V GGPV++R A +H E GG P + DP F G ++ A+ + + AEPT+ + G S W+ GQL+ EL +G WI +AP SLAL LW+ +++++GG YAE++ +P
Sbjct: 131 VQLTENVVP-------GVFLLAHPLLD-----GIFSRSVVILTSHKIDGSTTGYIVNKVSKKTLGRMFQ-----VPSRVTRAFATSSVHMGGPVVTRDAEVIHGRAEFGGQRVPTPSFPTTDDPSLFVGVDLDAAARAIYDETAEPTEIVFMSGKSTWSPGQLKSELKQGSWIAVQAPVSLALNARTELWQDLMESLGGEYAEMSCMP 321
BLAST of mRNA_F-serratus_M_contig1524.3588.1 vs. uniprot
Match: A0A0P1AP23_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AP23_PLAHL) HSP 1 Score: 110 bits (274), Expect = 8.630e-23 Identity = 68/193 (35.23%), Postives = 97/193 (50.26%), Query Frame = 2
Query: 794 AKGVFLISHPVAGLHAPGDIFHRSVVLLVHHYHGGSYGLVVNKERGETLEEAISPDSAPLASEALRRVLHNPVRSGGPV-MSRLAWLHHHEEVGGVPLSEDSH----DPVFFCGT-MEKASELLGEGAAEPTDFSLLLGASMWASGQLQGELDRGMWIMAKAPASLALEGGENLWRQMLDAMGGPYAELARVP 1354
A G+FL++HPV IF RSVV+L H GS G +VNK + L + S R + V GGPV M LH + GG LS + DP F G ++ A+ + + A+ TD + G S W+SGQL E+ +G WI AP +LAL LW+ ++ ++GG YAE++ +P
Sbjct: 138 ASGMFLLAHPVLN-----GIFSRSVVILTEHTPEGSKGFIVNKVMEKPLGRVFQ-----VPSRVTRAFATSTVHKGGPVSMKNAEVLHGRADFGGQRLSTSNFPMADDPSLFVGVDLDAAARAIYDETAKQTDLVFISGMSTWSSGQLDTEIKQGSWITVNAPVTLALNARAELWQDLMQSLGGEYAEMSCMP 320
BLAST of mRNA_F-serratus_M_contig1524.3588.1 vs. uniprot
Match: G8TCS0_NIAKG (UPF0301 protein Niako_7310 n=7 Tax=Niastella TaxID=354354 RepID=G8TCS0_NIAKG) HSP 1 Score: 89.0 bits (219), Expect = 8.860e-17 Identity = 61/190 (32.11%), Postives = 91/190 (47.89%), Query Frame = 2
Query: 791 PAKGVFLISHPVAGLHAPGDIFHRSVVLLVHHYHGGSYGLVVNKERGETLEEAISPDSAPLASEALRRVLHNPVRSGGPV-MSRLAWLHHHEEVGGVPLSEDSHDPVFFCGTMEKASELLGEGAAEPTDFSLLLGASMWASGQLQGELDRGMWIMAKAPASLALEG-GENLWRQMLDAMGGPYAELARVP 1354
P G+ LI+ P L P F R+VV L H GS+G V+N+ G TL E ++ L PV GGPV M + +LH + ++ +P S + D +++ G E A L+ G+ + T +G S W SGQL EL W+ A+A L + +W++ L +GG Y +A P
Sbjct: 4 PGPGILLIAEPF--LKDPN--FSRTVVFLCDHQDEGSFGFVINRVFGHTLNELMNDLDE----------LKLPVFYGGPVQMDTIHFLHQYPDL--IPGSYEVLDGIYWGGDFETAITLIKAGSIDTTKIRFFIGYSGWGSGQLNDELKEKSWLTAQATRKLVFHRKADEIWKESLKHLGGDYEMMANFP 177
BLAST of mRNA_F-serratus_M_contig1524.3588.1 vs. uniprot
Match: A0A3M1IK62_9BACT (UPF0301 protein D6766_07465 n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A3M1IK62_9BACT) HSP 1 Score: 86.7 bits (213), Expect = 6.040e-16 Identity = 66/199 (33.17%), Postives = 98/199 (49.25%), Query Frame = 2
Query: 782 TNVPAKGVFLISHPVAGLHAPGDIFHRSVVLLVHHYHGGSYGLVVNKERGETLEEAISPDSAPLASEALRRVLHNPVRSGGPVMSR-LAWLHHHEEVGGVPLSEDSHDPVFFCGTMEKASELLGEGAAEPTDFSLLLGASMWASGQLQGELDRGMWIMAKAPASLALEG--GENLWRQMLDAMGGPYAELARVPHGNSW 1369
T+ KG FL+ G + G FHR+VVL+ HH G++GLV+N+E G + EA+ D A E +R + P+ GGPV + +++LH V L + + P G + + E + + L G + WA GQL+GEL R W++ A L + GE LW+ +L + G Y LA P SW
Sbjct: 4 THKSLKGYFLLD----GGNLAGSFFHRTVVLICHHDENGAFGLVLNRESGHAVGEALVADLA----EPIREL---PLLVGGPVQPQAMSFLH-----SDVFLPDANVMPNLRLGHSVEELVEISESWSPTSRLKLFAGYAGWAPGQLEGELKRKAWLVHPASLELIFDTPPGE-LWQTILRSKGPIYRLLAESPEDLSW 185
BLAST of mRNA_F-serratus_M_contig1524.3588.1 vs. uniprot
Match: A0A4V1UQ20_9BACT (UPF0301 protein EOO01_34085 n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A4V1UQ20_9BACT) HSP 1 Score: 82.8 bits (203), Expect = 1.220e-14 Identity = 58/191 (30.37%), Postives = 96/191 (50.26%), Query Frame = 2
Query: 791 PAKGVFLISHPVAGLHAPGDIFHRSVVLLVHHYHGGSYGLVVNKERGETLEEAISPDSAPLASEALRRVLHNPVRSGGPV-MSRLAWLHHH-EEVGGVPLSEDSHDPVFFCGTMEKASELLGEGAAEPTDFSLLLGASMWASGQLQGELDRGMWIMAKAPASLAL-EGGENLWRQMLDAMGGPYAELARVP 1354
PA G LI+ P L P F R+VV + H+ GS+G V+N+ G TL+E ++ + PV GGPV M + +LH + EE+ G S + + +++ G E A +LL +G + +G S W+ GQL EL++ W+ +A L + + LW++ + ++GG Y+ + P
Sbjct: 4 PAPGTLLIAEPF--LKDPN--FSRTVVFICDHHEQGSFGFVLNRSYGHTLDELMNDMGD----------MKIPVFYGGPVQMDTIHFLHQYPEEIAG---SYEIMNGIYWGGDFELAIDLLRKGQIDLARIRFFIGYSGWSEGQLSEELNQKSWLTLEANRKLVFFKDVDELWKEAVKSLGGDYSMMINFP 177
BLAST of mRNA_F-serratus_M_contig1524.3588.1 vs. uniprot
Match: A0A7S0ZNJ2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZNJ2_NOCSC) HSP 1 Score: 85.5 bits (210), Expect = 4.290e-14 Identity = 73/209 (34.93%), Postives = 104/209 (49.76%), Query Frame = 2
Query: 800 GVFLISHPVAGLHAPGDIFHRSVVLLVHHYHGG--SYGLVVNKERGETLEEAISPDSAPLAS------EALRRVLHNPVRSGGPVM-----SRLAWLHHHEEVGGVPLSEDSHDPVFFCGTMEKASELLGEGA--AEPTDFSLLLGASMWASGQLQGELDRGMWIMAKAPA-SLALE------GGENLWRQMLDAMGGPYAELARVPHG 1360
G FL++HP++G P +F +V+L+V + GLV+NK E L+EA+ AP S + L+ + + +GGPV+ L+W+H H G VP SE+ VFF G + S + G+ E L G + W+ QL EL+RG+WI A+A S ALE E WR L+A+G P LAR P G
Sbjct: 176 GDFLVAHPLSGFFQP--VFDMAVLLIVRVDSDSDTAQGLVLNKPTKELLKEAVC--KAPSDSLHGDVPDTLKLFETDVLSNGGPVVFESLQDSLSWVHTH---GVVPNSEEVAPAVFFGGDLSTLSAMESSGSRRGEARRVRLFRGFATWSLSQLDLELERGVWIRARASCRSAALELCLGSASTEAAWRSALEAVGLP--ALARFPRG 375
BLAST of mRNA_F-serratus_M_contig1524.3588.1 vs. uniprot
Match: A0A1Z5KBR9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBR9_FISSO) HSP 1 Score: 85.1 bits (209), Expect = 8.500e-14 Identity = 72/243 (29.63%), Postives = 110/243 (45.27%), Query Frame = 2
Query: 800 GVFLISHPVAGLHAPGDIFHRSVVLLVHHYHG------------GSYGLVVNK-------ERGETLEEAISPDSAPLASEALRRVLHNPVRSGGPVMSRLAWLHH---------------HEEVGG--VPLS-EDSHDP--------VFFCGTMEKASELLGEGAAEPTDFSLLLGASMWASGQLQGELDRGMWIMAKAPASLALEG---------GEN-----LWRQMLDAMGGPYAELARV 1351
G FL++HP H G F R+V+ L+ H G G+YGLV+N+ R TL E + P L ++ + + PV+ GGPV + L+ +EE+GG +P+ E+ H+ V F G + A++ + G + + S +GAS WA GQL+ E++RG W+ + P +AL G G++ LW ML A G AELA +
Sbjct: 220 GTFLVAHP----HMKG-YFRRTVICLLDHQDGETDVSRQCQSPYGTYGLVINRICTSPQSNRNFTLHEVLKP----LPNDLMMAFGNYPVKEGGPVNMSVQILYSVSDAEVADGCPSGKSNEEIGGHLLPMVLENEHESTAFHSDRSVHFGGDVLSAAKAVLAGQLDRDEISFFVGASCWAPGQLESEIERGFWLPCRGPPEIALSGVCQHEPSLKGQSRPKTDLWLSMLSACGEGEAELAHL 453
BLAST of mRNA_F-serratus_M_contig1524.3588.1 vs. uniprot
Match: A0A7Y5C3N3_9FLAO (UPF0301 protein HUU48_06815 n=2 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7Y5C3N3_9FLAO) HSP 1 Score: 80.5 bits (197), Expect = 1.030e-13 Identity = 60/192 (31.25%), Postives = 88/192 (45.83%), Query Frame = 2
Query: 791 PAKGVFLISHPVAGLHAPGDIFHRSVVLLVHHYHGGSYGLVVNKERGETLEEAISPDSAPLASEALRRVLHNPVRSGGPVM-SRLAWLHHHEEVGGVPLSEDSH--DPVFFCGTMEKASELLGEGAAEPTDFSLLLGASMWASGQLQGELDRGMWIMAKAPASLALEG-GENLWRQMLDAMGGPYAELARVP 1354
P KG LIS P + P F R+VVLL H GS+GL++NK G ++ + + V + V GGPV +L ++H +G + L E H +++ G + L+ +G + +G S W GQL+ EL WI++ S E G LW +L MGG +A LA P
Sbjct: 17 PDKGRLLISDP----YLPDPSFRRAVVLLCEHNQKGSFGLILNKPLGISINDTLIDFP----------VFNAEVYMGGPVEPDKLFFIH---TLGNI-LPESIHITHNLYWSGNFDALKNLIKKGEVTQNNIRFFIGYSGWDKGQLEEELKGDSWIISNTDVSAIFESKGTLLWHNILKKMGGQFAVLANFP 190
BLAST of mRNA_F-serratus_M_contig1524.3588.1 vs. uniprot
Match: A0A437PS20_9BACT (YqgE/AlgH family protein n=1 Tax=Sandaracinomonas limnophila TaxID=1862386 RepID=A0A437PS20_9BACT) HSP 1 Score: 78.6 bits (192), Expect = 4.010e-13 Identity = 60/196 (30.61%), Postives = 95/196 (48.47%), Query Frame = 2
Query: 785 NVPAK-GVFLISHPVAGLHAPGDI-FHRSVVLLVHHYHGGSYGLVVNKERGETLEEAISPDSAPLASEALRRVLHNPVRSGGPV-MSRLAWLHHHEEV--GGVPLSEDSHDPVFFCGTMEKASELLGEGAAEPTDFSLLLGASMWASGQLQGELDRGMWIMAKAPASLALEGG-ENLWRQMLDAMGGPYAELARVP 1354
NVP + G L++ P G D+ FHR VVL+ H ++GL++N++ LE L ++L + P+ SGGPV S L +LH ++ GGV + +D +++ G +A + + + +G S W GQL+ E+D W +AK + +LWRQ+L +GG Y LA P
Sbjct: 6 NVPLQAGTLLVAEPYLG-----DLSFHRKVVLICEHSASHTFGLILNQKHDTILEPF-------LEGQSLEDI---PLFSGGPVDPSILQFLHKRPDLISGGVRIVDD----LYWAGDFNEAIDAIVNEKINFDEIKFFIGYSGWDGGQLEREIDSNSWHLAKVQPKYVFDTPFADLWRQVLQDLGGDYRVLATYP 182 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1524.3588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1524.3588.1 >prot_F-serratus_M_contig1524.3588.1 ID=prot_F-serratus_M_contig1524.3588.1|Name=mRNA_F-serratus_M_contig1524.3588.1|organism=Fucus serratus male|type=polypeptide|length=454bp MAHRSDPVSKAVYRSVLRYARRFDKNIAAKALINQHGIVTPPSDELLVEAback to top mRNA from alignment at F-serratus_M_contig1524:37057..45725+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1524.3588.1 ID=mRNA_F-serratus_M_contig1524.3588.1|Name=mRNA_F-serratus_M_contig1524.3588.1|organism=Fucus serratus male|type=mRNA|length=8669bp|location=Sequence derived from alignment at F-serratus_M_contig1524:37057..45725+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1524:37057..45725+ >mRNA_F-serratus_M_contig1524.3588.1 ID=mRNA_F-serratus_M_contig1524.3588.1|Name=mRNA_F-serratus_M_contig1524.3588.1|organism=Fucus serratus male|type=CDS|length=2724bp|location=Sequence derived from alignment at F-serratus_M_contig1524:37057..45725+ (Fucus serratus male)back to top |