mRNA_F-serratus_M_contig1523.3587.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1523.3587.1
Unique NamemRNA_F-serratus_M_contig1523.3587.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1523.3587.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.080e-28
Identity = 58/144 (40.28%), Postives = 92/144 (63.89%), Query Frame = 1 
Query:    1 SPSRQLDHFRRKNWDCFSKLESGQTPTRFRLRFVCAHDCRPVACGADGKGYVLEQKDWQRWLQTFLPVFQLSLWLLHVGISVVARVDLLPVDDIVTVLQQVICEKGAGMVERLDLKGQTN-------SDLDKQVEVYGKSYKEL 411
            S   +L HFRR+  D    L  GQTP  +R+RF+CA+D     CG DG GY +E   W+ WLQ ++PV Q++LW + VG+SVV+R D+LPVDD++  L++V  E+ A M+  +D++G  +        ++D++ EV+G ++ +L
Sbjct:  747 SDQSRLSHFRREMMDQLF-LGKGQTPQHYRIRFLCAYDLSAATCGEDGLGYKVEIGSWKGWLQKYMPVIQVALWTVRVGVSVVSRADILPVDDVMGKLREVAGEEAATMIGEIDVRGHCSLSGQDLVQEVDRKAEVFGSAFNKL 889
[Close]
BLAST of mRNA_F-serratus_M_contig1523.3587.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 7.060e-28
Identity = 62/140 (44.29%), Postives = 88/140 (62.86%), Query Frame = 1 
Query:   13 QLDHFRRKNWDCFSKLES-GQTPTRFRLRFVCAHDCRPVACGADGKGYVLEQKDWQRWLQTFLPVFQLSLWLLHVGISVVARVDLLPVDDIVTVLQQVICEKGAGMVERLDLKGQTNSDLD------KQVEVYGKSYKEL 411
            +L HFRR   D   + E  G  P  +R+RF+CA+D     CG DG GY +E + WQ WL+  LPV ++SLWLL VGISVV R D+LPVD ++  L++V  E+ AG++  +DL+G+ +S  D       Q +V+G +Y EL
Sbjct:  929 RLSHFRRDMVDKLLRREGEGPAPQCYRIRFLCAYDLTAGTCGKDGLGYKVEIQGWQEWLKACLPVIKVSLWLLRVGISVVTRADVLPVDGVIETLEEVAGEEAAGILGEIDLEGRRSSGQDLVDKVNAQEQVFGTAYAEL 1068
[Close]
BLAST of mRNA_F-serratus_M_contig1523.3587.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 6.480e-11
Identity = 45/146 (30.82%), Postives = 77/146 (52.74%), Query Frame = 1 
Query:   19 DHFRRKNWDCFSKLESGQTPTRFRLRFVCAHDCRPVACGADGKGYVLEQ-KDWQRWLQTFLPVFQLSLWLLHVGISVVARVDLLPVDDIVTVLQQVICEKGAGMVERLDL--------------KGQTNSDLDKQVEVYGKSYKEL 411
            +  +R  WD ++K  S     +FR+ F+C HD   V CG  G+G+ ++  KDW   ++ +LP+ Q+SLW+L V +  V+ VDL P++    VL   +   GA ++E +                +G T +++D   ++ GKSY+ L
Sbjct:  956 ERIQRAGWDRWTKALSEMGFHKFRVHFLCGHDLSEVPCGPGGRGFPIKHPKDW---VKQWLPLMQVSLWMLRVAVGAVSNVDL-PLNK---VLGAFVMATGAELLEGVGKVPDRISSAALPVFSEGATRAEMDGFKDLRGKSYEGL 1094
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1523.3587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JSN1_9PHAE1.080e-2840.28Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPJ1_9PHAE7.060e-2844.29Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LKS5_ECTSI6.480e-1130.82LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1523contigF-serratus_M_contig1523:150670..151472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size415
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929508.177486-CDS-F-serratus_M_contig1523:150671..1508721622929508.177486-CDS-F-serratus_M_contig1523:150671..150872Fucus serratus maleCDSF-serratus_M_contig1523 150672..150872 -
1690962884.6520863-CDS-F-serratus_M_contig1523:150671..1508721690962884.6520863-CDS-F-serratus_M_contig1523:150671..150872Fucus serratus maleCDSF-serratus_M_contig1523 150672..150872 -
1622929508.198028-CDS-F-serratus_M_contig1523:151262..1514721622929508.198028-CDS-F-serratus_M_contig1523:151262..151472Fucus serratus maleCDSF-serratus_M_contig1523 151263..151472 -
1690962884.660046-CDS-F-serratus_M_contig1523:151262..1514721690962884.660046-CDS-F-serratus_M_contig1523:151262..151472Fucus serratus maleCDSF-serratus_M_contig1523 151263..151472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1523.3587.1prot_F-serratus_M_contig1523.3587.1Fucus serratus malepolypeptideF-serratus_M_contig1523 150672..151472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1523.3587.1

>prot_F-serratus_M_contig1523.3587.1 ID=prot_F-serratus_M_contig1523.3587.1|Name=mRNA_F-serratus_M_contig1523.3587.1|organism=Fucus serratus male|type=polypeptide|length=137bp
SPSRQLDHFRRKNWDCFSKLESGQTPTRFRLRFVCAHDCRPVACGADGKG
YVLEQKDWQRWLQTFLPVFQLSLWLLHVGISVVARVDLLPVDDIVTVLQQ
VICEKGAGMVERLDLKGQTNSDLDKQVEVYGKSYKEL
back to top

mRNA from alignment at F-serratus_M_contig1523:150670..151472-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1523.3587.1 ID=mRNA_F-serratus_M_contig1523.3587.1|Name=mRNA_F-serratus_M_contig1523.3587.1|organism=Fucus serratus male|type=mRNA|length=803bp|location=Sequence derived from alignment at F-serratus_M_contig1523:150670..151472- (Fucus serratus male)
TCGCCATCGCGACAATTAGACCACTTCCGACGGAAAAACTGGGATTGTTT
TTCCAAGTTGGAAAGTGGACAGACTCCGACTAGGTTTCGCCTGCGCTTCG
TATGCGCACACGACTGCAGACCCGTGGCATGTGGGGCTGATGGAAAGGGT
TACGTGTTGGAACAGAAGGACTGGCAAAGGTGGCTCCAGACGTTCTTACC
TGTGTTCCAGGTAAAAACGCCGTAACAAGGATGGGACTCCCTCAAAAGTC
TGACTTGAATAGTTTTCAGGAAAACCTGAACGCATCTTAACCCTATGAGC
ATCCATCCGATCAGGGGGGAAACAGTTGTAGTACAAGCATGTATTGAATT
ATTTAGTTTTGAATTTAGTGAAACCCTGACGCCTAGAGCTCTTGAATAAT
TTTCTTCTGATACATTGATTATGATATAAAATGTTTGAACTCAAGGAGTT
GGCTGCGATGCGCATCTCCGCCTTCTTTCTAGTATAGTATATAAAATTAT
AGCTATTAACATAGTGCTGACAACGATCTGACATTTTGTTTACAAATTTT
CGGGGCACTTCTTTTCGTGAAACTGTCCGGGAACTGCATGGGACGCTCAG
CTCTCCCTATGGTTACTTCATGTGGGTATCTCCGTCGTCGCTCGGGTAGA
TCTACTTCCGGTGGACGATATCGTGACGGTGCTCCAGCAGGTTATCTGCG
AGAAAGGTGCAGGAATGGTGGAGAGGCTGGACCTGAAGGGCCAGACTAAC
TCAGATCTTGACAAACAGGTTGAGGTGTATGGAAAGTCGTACAAAGAGCT
GGT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1523:150670..151472-

>mRNA_F-serratus_M_contig1523.3587.1 ID=mRNA_F-serratus_M_contig1523.3587.1|Name=mRNA_F-serratus_M_contig1523.3587.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig1523:150670..151472- (Fucus serratus male)
TCGCCATCGCGACAATTAGACCACTTCCGACGGAAAAACTGGGATTGTTT
TTCCAAGTTGGAAAGTGGACAGACTCCGACTAGGTTTCGCCTGCGCTTCG
TATGCGCACACGACTGCAGACCCGTGGCATGTGGGGCTGATGGAAAGGGT
TACGTGTTGGAACAGAAGGACTGGCAAAGGTGGCTCCAGACGTTCTTACC
TGTGTTCCAGTCGCCATCGCGACAATTAGACCACTTCCGACGGAAAAACT
GGGATTGTTTTTCCAAGTTGGAAAGTGGACAGACTCCGACTAGGTTTCGC
CTGCGCTTCGTATGCGCACACGACTGCAGACCCGTGGCATGTGGGGCTGA
TGGAAAGGGTTACGTGTTGGAACAGAAGGACTGGCAAAGGTGGCTCCAGA
CGTTCTTACCTGTGTTCCAGCTCTCCCTATGGTTACTTCATGTGGGTATC
TCCGTCGTCGCTCGGGTAGATCTACTTCCGGTGGACGATATCGTGACGGT
GCTCCAGCAGGTTATCTGCGAGAAAGGTGCAGGAATGGTGGAGAGGCTGG
ACCTGAAGGGCCAGACTAACTCAGATCTTGACAAACAGGTTGAGGTGTAT
GGAAAGTCGTACAAAGAGCTGCTCTCCCTATGGTTACTTCATGTGGGTAT
CTCCGTCGTCGCTCGGGTAGATCTACTTCCGGTGGACGATATCGTGACGG
TGCTCCAGCAGGTTATCTGCGAGAAAGGTGCAGGAATGGTGGAGAGGCTG
GACCTGAAGGGCCAGACTAACTCAGATCTTGACAAACAGGTTGAGGTGTA
TGGAAAGTCGTACAAAGAGCTG
back to top