mRNA_F-serratus_M_contig1522.3583.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1522.3583.1
Unique NamemRNA_F-serratus_M_contig1522.3583.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1522.3583.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 2.250e-23
Identity = 60/142 (42.25%), Postives = 86/142 (60.56%), Query Frame = 3 
Query:  195 QVCSNGIAGVEGSDACCVVDCGTCGGSGCGSRARAAGLTPNDCCIGRIRETNVFCDDSSTAPCLISSVEETCSSNGLPGIEASGVCCVAECPQCGGSGCGSKARGVGLASSDCCIGAITSAGVSCNDSGMAPCVIDTVCGPA 620
             VCSNGI G++  +ACC+ +CG CGG+GC       GL  ++CC+  I +    C  +  APC+   V++ CS NG+PGI+    CC+AEC  CGG+GC     G GL + +CC+  I   G  C+ +  APC++D+V GPA
Sbjct: 2818 DVCSNGIPGIQTGNACCLAECGGCGGTGCAQLG--GGLGADNCCMSEIEDFGELCSVTMEAPCV---VDDVCS-NGIPGIQTGNACCLAECGGCGGTGCAQL--GGGLGADNCCMSEIEDFGELCSATMTAPCIVDSVSGPA 2951
[Close]
BLAST of mRNA_F-serratus_M_contig1522.3583.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 7.470e-22
Identity = 62/140 (44.29%), Postives = 83/140 (59.29%), Query Frame = 3 
Query:  573 DSGMAPCVIDTVCGPALTITLEWSESLNDLDLAVTEPDGTLVRFSNMVGSAGFLDMDIREGPGVEIYTIFSGLDTDSVSVLGDYKIQARRFSGPTDT-MWTLVATLVEEVILVETGDFTESGNSEIFTVSVTDYDSSCEG 989
            D+  A  V ++ C P+LTITLEW+  ++D+DL V EP G +V FSN  G  GFLD D   G G E Y I S LD  +  VLG+Y+   + +SG   T  W L A +  EV+ +E GDF  S  S+ F VS++ YD +C G
Sbjct:  299 DTAFALDVSNSACVPSLTITLEWTGEISDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATETWRLTARVSGEVVWIEEGDFISSTQSDTFAVSLSVYDPTCGG 438
[Close]
BLAST of mRNA_F-serratus_M_contig1522.3583.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.780e-21
Identity = 63/144 (43.75%), Postives = 82/144 (56.94%), Query Frame = 3 
Query:  177 VASNNAQVCSNGIAGVEGSDACCVVDCGTCGGSGCGSRARAAGLTPNDCCIGRIRETNVFCDDSSTAPCLISSVEE---TCSSNGLPGIEASGVCCVAECPQCGGSGCGSKARGVGLASSDCCIGAITSAGVSCNDSGMAPCVI 599
            VA  +   CSNG++G+E    CC V+CGTCGG+GCGSR    GLT  DCC   I+E N  C  +  APC+I    E   TCS+    G+    +CC A C  CGG+GC  +    GL+  +CC   I +A  SC+D   APCV+
Sbjct:   16 VAHASGTTCSNGLSGLEKGGVCCPVECGTCGGTGCGSRP---GLTKYDCCTSTIKEDNHLCSVTKEAPCVIDEETEADPTCSN----GVAKGDICCSAGCGYCGGTGCAGRG---GLSGDECCTSKIAAANKSCDDQS-APCVM 148
[Close]
BLAST of mRNA_F-serratus_M_contig1522.3583.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.350e-20
Identity = 60/136 (44.12%), Postives = 78/136 (57.35%), Query Frame = 3 
Query:  195 QVCSNGIAGVEGSDACCVVDCGTCGGSGCGSRARAAGLTPNDCCIGRIRETNVFCDDSSTAPCLISSVEETCSSNGLPGIEASGVCCVAECPQCGGSGCGSKARGVGLASSDCCIGAITSAGVSCNDSGMAPCVID 602
             VCSNGI G++  +ACC+ +CG CGGSGC       GL  ++CC+  I E    C  +  APC I   ++TC  NG+PGI++   CC+AEC  CGGSGC     G GL   +CC   I   G  C+    APCV+D
Sbjct: 1081 DVCSNGIPGIQTDNACCLAECGACGGSGCDEFG--GGLGADNCCVSDIVEYGELCSIALEAPCYI---DDTCY-NGIPGIQSGNACCLAECGGCGGSGCAQL--GGGLGEDNCCQSEIEDFGELCSVKMAAPCVVD 1208
[Close]
BLAST of mRNA_F-serratus_M_contig1522.3583.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.880e-20
Identity = 64/163 (39.26%), Postives = 91/163 (55.83%), Query Frame = 3 
Query:  138 FTQWIFVILGLLMVASNNA-QVCSNGIAGVEGS--DACCVVDCGTCGGSGCGSRARAAGLTPNDCCIGRIRETNVFCDDSSTAPCLISSV---EETCSSNGLPGIEA--SGVCCVAEC-PQCGGSGCGSKARGVGLASSDCCIGAITSAGVSCNDSGMAPCVI 599
            FT  + V + LL+     A  VCSNG+ G++ +  DACCV +CG CGG GC + A  + LT  DCC   I E+   C+ S  APC+I++     ++   NG  G++   + VCC   C   CGG GCGS A   G+ ++ CC   I  +G  C+D+  APCV+
Sbjct:    8 FTALVCVAIALLVGTMTPAGAVCSNGLEGIQSTSLDACCVEECGLCGGVGC-TPANTSSLTSADCCATEIIESGTLCEVSMAAPCIITTAAASNDSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLA---GVDATQCCSNLIIESGAVCSDTVSAPCVV 166
[Close]
BLAST of mRNA_F-serratus_M_contig1522.3583.1 vs. uniprot
Match: D7FJ69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 4.460e-20
Identity = 62/152 (40.79%), Postives = 78/152 (51.32%), Query Frame = 3 
Query:  195 QVCSNGIAGVEGSDACCVVDCGTCGGSGCGSRARAAGLTPNDCCIGRIRETNVFCDDSSTAPCLI-------SSVEETCS---------SNGLPGIEASGVCCVAECPQCGGSGCGSKARGVGLASSDCCIGAITSAGVSCNDSGMAPCVID 602
             VCSNGI GV+   +CC+ +CG CGGSGC       GL  ++CC G I E    C     APC++       S V E  +         SNG PGI++   CC+AEC +CGG GCG    G GL +  CC   I   G  C+ +  APC ID
Sbjct:   33 DVCSNGIPGVQSGVSCCLAECGGCGGSGCAELG--GGLGEHNCCEGEIEEFGELCSIKLEAPCVVDASAPAPSPVAEPVAPVTEPTDVCSNGFPGIQSGVSCCLAECGECGGRGCGEF--GGGLGADKCCESDIEEYGELCSIALAAPCYID 180
[Close]
BLAST of mRNA_F-serratus_M_contig1522.3583.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.490e-17
Identity = 60/158 (37.97%), Postives = 80/158 (50.63%), Query Frame = 3 
Query:  198 VCSNGIAGVEGSDACCVVDCGTCGGSGCGSRARAAGLTPNDCCIGRIRETNVFCDDSSTAPCLIS---------------SVEETCSSNGLPGIEASGVCCVAECPQCGGSGCGSKARGVGLASSDCCIGAITSAGVSCNDSGMAPCVIDTVCGPALT 626
            +C  GIAG++ SD CC V CG+CGGSGC  R   +    + CC G +R +  FC  +  APC+                 +VE       + GI+AS VCC A C  CGGSGC  +  G    S  CC G + ++G  C+ +G APC+     GPA T
Sbjct:  179 MCEGGIAGIQASDVCCSVSCGSCGGSGCSGRDGGS----DACCGGGVRASGRFCSITEEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGEIVGIQASDVCCSASCGSCGGSGCSGRDGG----SDACCGGGVRASGRFCSVTGEAPCMT----GPAPT 324
[Close]
BLAST of mRNA_F-serratus_M_contig1522.3583.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 6.920e-17
Identity = 61/151 (40.40%), Postives = 75/151 (49.67%), Query Frame = 3 
Query:  168 LLMVASNNAQVCSNGIAGVEGSDACCVVDCGTCGGSGCGSRARAAGLTPNDCCIGRIRETNVFCD------DSSTAPCLISSVEETCSSNGLPGIEASGVCCVAECPQCGGSGCGSKARGVGLASSDCCIGAITSAGVSCNDSGMAPCVID 602
            LL   S+     S G  G+   D CC  +CGTCGGSGCGSRA   GLT N+CC   I   NV C       D  T+P           S    G+     CC A C +CGGSGC    RG GL  +DCC   I++    C+ +G APC++D
Sbjct:   73 LLEEGSSPTPASSGGCDGILQGDVCCSAECGTCGGSGCGSRA---GLTANECCTSTIAAANVPCGSAPCVVDGDTSPTXXXXXXXXSGSFTCDGVLKGDYCCSAGCVECGGSGCSD--RGGGLTGADCCTSDISNL---CSVTGAAPCIVD 215
[Close]
BLAST of mRNA_F-serratus_M_contig1522.3583.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.230e-15
Identity = 68/190 (35.79%), Postives = 85/190 (44.74%), Query Frame = 3 
Query:  156 VILGLLMVASNNAQVCSNGIAGVEGSDACCVVDCGTCGGSGCGSRARAAGLTPNDCCIGRIRETNVFCDDSSTAPCLISS---------------VEETC------------------------SSNGLPGIEASGVCCVAE--CPQCGGSGCGSKARGVGLASSDCCIGAITSAGVSCNDSGMAPCVID 602
            ++L +L V    AQ CSNG  G+E S ACCV DCGTCGGSGC SR   +GLT +DCC   I +    C  +  APC +                 V E C                         +N   G    G+    E  C  CGG+GC  +    GL  SDCCIG I  +G  C+ +G APC +D
Sbjct:    6 LVLPMLSVGVAAAQKCSNGFPGIEKSGACCVSDCGTCGGSGCSSRE--SGLTGDDCCTKNILKQGAPCSATGHAPCFLDGDSTPSKSTPTESDGFVYEGCFNDKPEPDRLFSYVTTMDDMTTELCANECKGYAFFGLQWGREAGCGTCGGTGCSQRP---GLTDSDCCIGKIEESGPLCSVTGKAPCFVD 190
[Close]
BLAST of mRNA_F-serratus_M_contig1522.3583.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 3.360e-15
Identity = 54/160 (33.75%), Postives = 75/160 (46.88%), Query Frame = 3 
Query:  192 AQVCSNGIAGVEGSDACCVVDCGTCGGSGCGSRARAAGLTPNDCCIGRIRETNVFCDDSSTAPCLISSVEE------------------------TCSSNGLPGIEASGVCCVAECPQCGGSGCGSKARGVGLASSDCCIGAITSAGVSCNDSGMAPCVI 599
            A  C  GI GV+ SD CC + CG+CGG GC  R        ++CC   IR  N+ C  +  APC+++S E                         TC   G+ G++AS VCC   C  CGG GC  +  G      +CC   I +A + C+ +G APC++
Sbjct:  408 AGTCDGGIVGVQASDVCCALSCGSCGGDGCSDRDGGE----DNCCGVEIRTANLDCSVTGEAPCIVTSPEPSTXXXXXXXXXXXXXTPAPSRAAGTCE-GGIVGVQASNVCCALSCGSCGGDGCSDRDGG----EDNCCGVEIRTANLDCSVTGEAPCIV 558
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1522.3583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FJ68_ECTSI2.250e-2342.25WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G5D6_ECTSI7.470e-2244.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNF5_9PHAE2.780e-2143.75MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JG29_9PHAE1.350e-2044.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LML5_ECTSI2.880e-2039.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJ69_ECTSI4.460e-2040.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3Y1_9PHAE1.490e-1737.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWE8_ECTSI6.920e-1740.40Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D8LRN0_ECTSI1.230e-1535.79Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7G3U7_ECTSI3.360e-1533.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1522contigF-serratus_M_contig1522:55663..65393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue4.4e-28
Seed eggNOG ortholog2880.D7FQV4
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1806
Cds size921
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1522.3583.1prot_F-serratus_M_contig1522.3583.1Fucus serratus malepolypeptideF-serratus_M_contig1522 62446..64639 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929507.426229-UTR-F-serratus_M_contig1522:55662..557381622929507.426229-UTR-F-serratus_M_contig1522:55662..55738Fucus serratus maleUTRF-serratus_M_contig1522 55663..55738 +
1690962884.3821723-UTR-F-serratus_M_contig1522:55662..557381690962884.3821723-UTR-F-serratus_M_contig1522:55662..55738Fucus serratus maleUTRF-serratus_M_contig1522 55663..55738 +
1622929507.4495578-UTR-F-serratus_M_contig1522:62390..624451622929507.4495578-UTR-F-serratus_M_contig1522:62390..62445Fucus serratus maleUTRF-serratus_M_contig1522 62391..62445 +
1690962884.3931227-UTR-F-serratus_M_contig1522:62390..624451690962884.3931227-UTR-F-serratus_M_contig1522:62390..62445Fucus serratus maleUTRF-serratus_M_contig1522 62391..62445 +
1622929507.5671613-UTR-F-serratus_M_contig1522:64639..653931622929507.5671613-UTR-F-serratus_M_contig1522:64639..65393Fucus serratus maleUTRF-serratus_M_contig1522 64640..65393 +
1690962884.4467065-UTR-F-serratus_M_contig1522:64639..653931690962884.4467065-UTR-F-serratus_M_contig1522:64639..65393Fucus serratus maleUTRF-serratus_M_contig1522 64640..65393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929507.472292-CDS-F-serratus_M_contig1522:62445..625061622929507.472292-CDS-F-serratus_M_contig1522:62445..62506Fucus serratus maleCDSF-serratus_M_contig1522 62446..62506 +
1690962884.402595-CDS-F-serratus_M_contig1522:62445..625061690962884.402595-CDS-F-serratus_M_contig1522:62445..62506Fucus serratus maleCDSF-serratus_M_contig1522 62446..62506 +
1622929507.4982805-CDS-F-serratus_M_contig1522:62662..628691622929507.4982805-CDS-F-serratus_M_contig1522:62662..62869Fucus serratus maleCDSF-serratus_M_contig1522 62663..62869 +
1690962884.4118779-CDS-F-serratus_M_contig1522:62662..628691690962884.4118779-CDS-F-serratus_M_contig1522:62662..62869Fucus serratus maleCDSF-serratus_M_contig1522 62663..62869 +
1622929507.515041-CDS-F-serratus_M_contig1522:63524..637311622929507.515041-CDS-F-serratus_M_contig1522:63524..63731Fucus serratus maleCDSF-serratus_M_contig1522 63525..63731 +
1690962884.4223108-CDS-F-serratus_M_contig1522:63524..637311690962884.4223108-CDS-F-serratus_M_contig1522:63524..63731Fucus serratus maleCDSF-serratus_M_contig1522 63525..63731 +
1622929507.5337782-CDS-F-serratus_M_contig1522:63957..640701622929507.5337782-CDS-F-serratus_M_contig1522:63957..64070Fucus serratus maleCDSF-serratus_M_contig1522 63958..64070 +
1690962884.4298148-CDS-F-serratus_M_contig1522:63957..640701690962884.4298148-CDS-F-serratus_M_contig1522:63957..64070Fucus serratus maleCDSF-serratus_M_contig1522 63958..64070 +
1622929507.551351-CDS-F-serratus_M_contig1522:64306..646391622929507.551351-CDS-F-serratus_M_contig1522:64306..64639Fucus serratus maleCDSF-serratus_M_contig1522 64307..64639 +
1690962884.4377792-CDS-F-serratus_M_contig1522:64306..646391690962884.4377792-CDS-F-serratus_M_contig1522:64306..64639Fucus serratus maleCDSF-serratus_M_contig1522 64307..64639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1522.3583.1

>prot_F-serratus_M_contig1522.3583.1 ID=prot_F-serratus_M_contig1522.3583.1|Name=mRNA_F-serratus_M_contig1522.3583.1|organism=Fucus serratus male|type=polypeptide|length=307bp
MWFTQWIFVILGLLMVASNNAQVCSNGIAGVEGSDACCVVDCGTCGGSGC
GSRARAAGLTPNDCCIGRIRETNVFCDDSSTAPCLISSVEETCSSNGLPG
IEASGVCCVAECPQCGGSGCGSKARGVGLASSDCCIGAITSAGVSCNDSG
MAPCVIDTVCGPALTITLEWSESLNDLDLAVTEPDGTLVRFSNMVGSAGF
LDMDIREGPGVEIYTIFSGLDTDSVSVLGDYKIQARRFSGPTDTMWTLVA
TLVEEVILVETGDFTESGNSEIFTVSVTDYDSSCEGTEPFPSGSRGETSS
AEDKLP*
back to top

mRNA from alignment at F-serratus_M_contig1522:55663..65393+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1522.3583.1 ID=mRNA_F-serratus_M_contig1522.3583.1|Name=mRNA_F-serratus_M_contig1522.3583.1|organism=Fucus serratus male|type=mRNA|length=9731bp|location=Sequence derived from alignment at F-serratus_M_contig1522:55663..65393+ (Fucus serratus male)
CGACCACCATCGTTCTCATCAGTTCGTGACCAACATAATCTTCTGAAGAA
CTTCGGGGGAACGAAGCCGCAAGAAGGTGGGACGAGAAAATTATCATTAG
GTCACTTCGCGTAAATCCTCGAGTAGTATAACAACAATAGGGACGGCGCA
AAGCCGAGCGCACGCTATAATAATAGTAGCAGCTCTTACATATTATTATC
AGTCGATGGTTTTTATTATACCACTAGCAGTAGTAATAGTAGTGCTGGTA
GTATGTATAGTCACGCATATCGCAGAGTATAGATTAACCGGGTAAGGTTG
CCAATCCTGCTTGTGGTGAGCTGAACAGAGAATAACGGATATTTTCCTGT
CACCGGTCGCGCCTGAGAGTTTACTCTTGCGAGGTAGGTTCGGTTGTTCC
GTCCTGCGTCCGCCTGCTCATTCCCCAGCATACTCAGAATTACTCCCGAT
TTTCGCGGCGGTATTAATTTATTTTGTTAAACCGCCAGCCACCATCGGGA
CAGTTCCGAGTTTATCAAGCATTTACTGCGTGTATAGTGAGTGGCAGTTT
TTACTGTCGAGAGTCCGCCGGCACAGGGCAGTAGTCCTCAAGGTAATTCC
CGTAACTGACGGGTTCAGAATTCTGCCTTTAACTTTGGATCACCATGGAC
CAAATGATGTCCGCCTTTCTCTTCCTTATTGGTATGAAATGGGCATGTTG
AAAGTATCGGAGGAATACAGTCGTACTTTCATTCCTTCCGGGTGGTGTTT
TTCTACCTTGTGATCGCACGGGCTGGATTTTTGACACAATATCTTATTAT
TGTGTGGAATTTCAATCAATCAATCATTCAATCAATCAGTACAGGGACTA
TCTCACTGATGCGGAGATATGATTAGTATATACGTAGCCAAGGGCATGAC
TACCTTAAACATTTACAATATTGGGACATGGGCTCGAGTCAGCTATGTAT
GTTAATATCATCGTCGTACAAGCAGAGTATTATTACATCGGGGGATTAGG
ATTTCTATGAAGGAGACTATAGATAACAAGGGACGAGGAAATAGAACGAC
CAACACCTAATATTCTAGTCTATGTATTGAGCACGTAATAATAACCTAGA
AGACATAATTATGTGTACCGTCCTCCTTATTGTCCCGTCCCTCAGAAGGG
AAAACTACGTAACAGTTGTATTCACTTGATGTTTGATCTACTTTCCGATT
TTAGTGATACGACGACGACACTGCCCAGCACTTTTATGTTGCGTCGCGTG
TGCATGAACATTATACAATTACGTCATCCGATTAGGGCCGTTCATACCTG
GTAGGCGACAGCCCGAGTGGTCTAGAAGGTAACCTGCATACCTGTTAGTG
CTGAAGTCGTGAGTTCGGTTCTTACAGCTTTATCAGAATTAATTTGTGTT
CTTTCTTTCGTAACGGAAAGCGTGGGAACGTGAGTAAGTAAAATTCAACC
ATTAGTTGACGAGTTGTAAGAGTGCTGAACATGCATCGCGATAAAAATTG
TACGGCGTGAACCGAGGAGCGATGGGAAGATCCCTTGTGACCACAGGCAG
GATGGTAGTTAGAGGTCCATCGGCTATAAAACTGTAGATGTCATGCGACT
CCAGCTAGCTATGGTGTCGCCATAATCCGGCTCAATATCACTATCTGTAC
ACAACAACAACTTATCAGTACAGCAAGTGATTCTGTAATATATACTTCGG
AGTAACTACTGGAGGTTTCTGTTTATACGGTGTTTTCCATGACCACGTTG
ATTTACCGGTAGACGTCTACCGGTGCTGTGCCGCTGTTCCAAACACGACC
CAGCAGCGATAATACAACGAGGCAGCTTGGCAGGAGTAAACGTGAGAGAG
TGCTCTGCGCTTCTACCCTTGTCTTATGTCTGCTTTCTCTGCTTAACTCC
GAAAATATTATGGGTTTGAGTTTTTGGTCTGGTTCCGTGTATCTTGTAAC
CACGGCTGGATTCGTAGCGGATCAGTGAATGTGAGATAAACAATAACAAC
AGCTGCAGGGCTGAGAGACAAAAAAAATAGAATAAGAGCAGCCGCTCGTC
CCGGAAGCTCAGAGGTAACCTCGTTACCTTCTGCCACGTTGGGATCTGAG
CTCGATTCCGGCAAACGAGCTTTTTCTCATAAAAAATAAATGCCCACCAG
TGAAGGCCGATTAAATTGTAAGTACACAAACGTTCGACTTCACGATCGAC
GAAGGAAAATAATTGATAAATCCTTCTCGCGATAAAAATTAAGGCGTGCA
CCGCACAAGAAAGGTGGATGAGAGATCCTGTGTGGCCCCGGCTGGTACGT
CCGCAATGAACTTAGTGCCCAGATCAAATGGAAAGAAAGCATACATACAC
ACACAACAACCGCTGATGTTCTGGTCTACGTAACTATGCAAGCGACGTTC
GACCGACCGACCCCATGCAACAGGTGTCGAGTCCCCAAGTCCGACCCTAG
CTACTAGAGAGTTGTGTTCTGCATTTCTACTTCAGGGCGAAAAGATAAAA
TAGATAGAATACCATCAGTTGTTCAATTGAGGAGGGTCGTCATTGGTACG
ACACGTGAAGTGCTTACTTTTTTACATCGTTTTTTTTTACGGCGAAAAAT
ATAATGGACGTCAACACCAATAAAGCATATTTTAACAAACATGGTACACT
TGCAACCATATCTCCGAAGATGAAGATTCCATCGGGATATGGCGCGCCAG
TAGCTACGTTTCGTGCAACTCTGTCTTCACCACCCAGGCTTTCCCCAGCA
CGTTCTCTTCCCTTTCGTGCTAAGCACCAAAGCCTCGGGACGATATCAAA
GCAAGCGACGTAGTTTAGTTTCCTCCGCGGAAAAGCCGTCTGAACTGGGC
ATTTTCTGTCACTTCCGATGAAACATTACATTACGGGGGTTGATCGAGTG
AAGGCTTCGATCAGGTACGGTGAGATGGTCTTGGTGTTGGGCGGAACGTA
GTCCTGCAGGTATTTAATACATGTCTTTATTATGCGTCCCGGTTGCGCGA
TTAACGTGCTACGGAATTTATCATATCGTCTTACCCATGTACATACACAT
AGACAAGGGTAACAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCA
CAAGCGAGTACACGCTCGCGTCTGAACCACCAGGGAGATATTAACTCCGT
CCCCCCGTGAGTAACGCATGTATCCTGCTATCAACTCCCACGTAGTTAgG
GGAGGATGAATTATAATTGACTACCACTCAACATCCCCCTTAATGCCGAC
GACATTACGTTTCCAATGTTTACTTTCTTATATTCAAATAGAATATCCCC
CTTAATAACCAAACATGCTCAACAGAGGTATGCTATACTTAGGATATTGG
TGCTCGAATTACTTGTGAAAACTACTCAAATTTCCAGTACATTGTTACCA
GAAAGAATTAAAAAAATCTTTTCACGAGGGCGGGCATTGAACAATCAAGT
TCATTAAGAAACGACGGTGAATTACGAACACATGAAATGCTTTGCCGCAA
ACGAATCTTACTGTGTAACTCAAAACAAGCATGTTTCAATGTTACTCTGC
ATCTTGTGCTACTGGTATTCATCAATCAGTGATCTCAATGTTTCAATGTT
ACTTCAACTGGCTAATGACGCACGTCCATGTTACTTGAAAACACAGTCAG
TTAGCTGAGTCAGGGACAGTTTTTCATATTGCAAAAAGGTGACGCACGTC
TTTACCGAAAATATAAGAATATCGAAAATATAAGTCTTGCAACTTCAACC
CTACAGTACTTACCTACAGCTTGAACTCACATGATAAAACTGGATTCCAA
GTGATTTTTGTGACAACGCTACTGTACTATAGCAGTCTTGTAGTGTCAAT
AGAACAATAATTCCCGTACTCAACTGAGTATGAAATCGCCATAGTACTTA
TTTCAGCATCACATTTCTCAGTACTTACTTTAGTACGAAATTGCTATAAC
GCTTGTTTCAGTATGAAAATCAGCTATGAGGAAAATTCGAATTCTACAAG
ACCAGGTGCAAACCAGATAATGCTTGTTCTTCGACGATCTTCAAGAGGGT
GACAGCGAGAAAAATGCTTGCCCTCCGGTCGCGCACATCAGCGCCTTGTT
CTTCTTGTCTTTATCCGTTATGTCTCAGGTCTTTCAGCTTGGACTGAAAA
ATCATCACCTGTGGAAAAATGAATTTGGGAAAAATAGAGAAACACACGAA
AACGAGAAACCGAACACATACGAAAGAAGAAACAGAACACAGGTAGACGA
TGCTCCCAGTTCCCCCAGATGAAAAAGAAAGATGGCTTGTACAGGCTGCT
TTTACAAGGCAGCAAGTCCTTTTCTTGGCCCCCGGGGTCGTACGTTTTGC
TCTCTTCGCTGGTGACGTCTGTTTCATCCGGAACTTTCCCAACTTGGGTA
CAGACGTGTTCCGGTGGTGATGCGTTGTCCATGTTTTCTTGGGGTGGTGA
TTCTTTTCCCCCTTGACTTGAAACCACGCCTACTTGCAAGAAGCCGCTGG
CGGTGATTTGTTCGTGGTCCTTCGTCCCCTCGCTCGGGGAATATTGCTGT
ACGGACGTTTCGGTGTCCGTGTCAGCCGATGATGGTTCGAGCTCTTGTTC
TAGCCCCAGGTCCACTCTAACCTCTTGTTCTCCATCCTCCAAAATAATAC
ATGCATCTTGCGGTGGAACGGGATTTGATGCATATGTCGTGCAGATTTGT
ACGAAGATTTGAACGGGCGTAGCATTTACCTCTGCCTGAACCGCCTCATC
GCGACTCCGCTTTTCCAGGTACTCCTTGATCGATTCATGTTCTGCGTCCG
TGAGTTCCATGTTTACCTTTCCTTGCTGAAGTTCACGAGCAAACCTTTCC
ATCCTTTTTCGCCTCCTTTCTAACGGGGAAAGGAAGATCGCGTCTCGCAG
CTCGTCGACCTCACTTAACATATAGGCGGTGTACTCTTGAGGTGAGAAAA
GAATATCATCGCGTACTACAGGCTTAGAACGGTCAAAACCATGTAACGTT
CTCCATCTTGCCAGCTCAGAGTGCATGAGGACGGTCTTCATGTTACTCAG
ATGGTGGGCAGCAACAACTTCGGCGATCTCAAATGATTTGTGCCGGCGCG
TCCGTTCCGCATCCGTCTCGAACATGAGATTAAATGCCGCATCCTTAGAA
AAGGAGTTCTTATTTCCGTGGATGTAAGGTTCAAGAGCCCTAGATACCTC
TTCACTCTTGCACCCCATTTTCTGCATGTATTCATAGAAAGGTATTGGAG
GCATGACTCACAATGTCTTCTTTAGCCCCAACTCCTTCGGTCCGTACGGG
AGGAGCTTCGCCTCCACTCCCGTGATCGTTCTCCTGTTCCCGGTATCGTC
AACTTCGCTGTCCCTCCAGCGGTGACGCTTCGCTTCCTTGGCGGTCTTGC
TCTCCTCGGCGGAAGTATCAATCTTCTGCAACCCAAATATAAAAATCGAC
ACTTTCTCACAGACGTCCAGTCGAAGGTCGAATAATCGTTAATCGATGTT
CCGAGCGTTAATCGTGATCGAGTGAAGGCTTCGATCAGGTACGGTGAGAT
GGTCTTGGTGTTGGGCGGAACGTAGTCCTGCAGGTATTTAATACATGTCT
TTATTATGCGTCCCGGTTGCGCGATTAACGTGCTACGGAATTTATCATAT
CGTCTTACCCATGTACATACACATAGACAAGGGTAACAAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGCACAAGCGAGTACACGCTCGCGTCTGAACCAC
CAGGGAGATATTAACTCCGTCCCCCCGTGAGTAACGCATGTATCCTGCTA
TCAACTCCCACGTAGTTAGGGGAGGAGGAATTATAATTGACTACCACTCA
ACAGGGGTGAAATTCGAAAGGAGTCACCCTCTCCGAACGTTGGCCCAATT
CAATCGAGCTCTTTTAGTGCACGAAACGTGTTGGGTCTGCGAAAGATGGA
GCTTTCGCTAACTACCGATCACCGTGCTATAAGTAAAAAATCGCTCGACC
CGTTGTCTTTGTTTCGAAGTAGTCCCCTGTAGTTGTGACGACGGCTTCCC
TTATTTATTGCAAGCTCCTCCACACAATGGCAGAAGTTACCATTTGATTC
ATTAACAACTTGTTTTGGGTCCATAACCGTCGTGGCTTCAGCGTTTCACT
AGCACTGCTTTTGCACACCGGAGGAAAGGCTAGAGGATGTTCTTGTTGGC
AGGGCAGAGGAGAGCGTATTATCACGACTCCGGCGTGCCCGAATAGTGAA
ACTGTTTGATATCCTTCGCTAAATATAAAAATGCTATTATACCTCAATGT
TCCTCACATTAGGATCCCATCTGCATCACACCTCTAAAGACGTCAGCTTC
TATCTCGTAATCCGACCAAGGAACCCAAGCCAACCTGCTCCTCTATAATT
TCGCAGTATATGGGCGGTGTGGAAAATCTGGGGTTATTTTCTCACCTACG
GCATGCTACAAGAAACGTACCTGTACGCTGCGTAGAGAACGCTTCAGGAA
GAATAAAAGGCTAGGGAAGAGCACTCGAATTGGAACAAAGTCATGGGCGC
GCGAGACTTACGCCGTGAAAATACTCGAAGCAGCACTCTTTTCTTTGATT
GTGATGAGAATATTTATGCGATGATTTTGTTAACAAATGAACCATTTCGA
TGAATTCCAAAAACGCGTCTTGGACCTTGCCGTCACACGTGCACGCCGTT
CCTCAACTCCCTGGCTCAACCCTCTCAGCGTAAAGACCGCAACACAAACC
TTCTGAAAATAAGAAGAGGATCTCAAGATTACCATGTGGTTTACGCAATG
GATCTTCGTCATCTTGGGGCTCCTGATGGTTGCCTCTAACAACGGTAAGT
GTGTATCGAGAATGTAAGGTGGTCCTTGGCCTACAACAGAGCTTGCGTCG
ATCTGTTGTGCGTCTAAAGTCACGGCGTCCCACGACAAGCATAATTGATT
TGTTCTCGTATTCGCTTATTATGTTTATCACTGTGGTATCGGACAAGCAG
CTCAGGTGTGCAGCAATGGCATTGCTGGCGTCGAGGGTTCCGACGCGTGC
TGCGTAGTTGACTGCGGCACGTGTGGCGGTTCGGGCTGCGGAAGCCGGGC
CCGGGCTGCCGGCCTGACTCCGAACGATTGCTGTATTGGACGCATCAGGG
AAACAAACGTGTTTTGCGACGACTCCAGTACCGCGCCGTGCCTCATCAGC
AGTGTTGGTGAGGGGTTTGGACAAAGTTGGTCGGCGGCCATGATGACGTG
TTTCATCGCAAGAAGGCAGTTTTTATTTGGACTGCCCCTCATCTGAATTG
ACGTCATGCGATCGATCATACCGATGTAGCAAACGTGTGCGGTCGGAGAT
CGCCGCTAAGTTCAGGTGGATAGTATAAGGCCCACTGAATATGCATCACT
AGAACATTCTACGTGCTCGTACCTTTGTCTCTAGTATGGAAATCTTCCTT
GGCCAGTATATGGTCAAGCAGTGGATTACAGAGCTACTGTCCTAACTACA
TAAACTGGCTTGCTTCAGCCGTTGCACAAAATGTATCACCGTCCAATTCC
TGTTTTGATTTGTTTACAAGGCGTATGCAAAATCTTTTATCATAATAGCT
GCCTTTATTGCCGACTTCTACCGCAAAGAAGAATATTACTGATAAAGGTG
GTGATGGGACGAACTATAGGCAGCCTACTGCTGCTTTACCTTGAACGTTT
TGAAGCTGCCTAGATCGAAATATTGGACTGGGAGTGATTTTTGGCAATTG
TACTAGCAACCCCCTGGTGGTTGTTGGTGCCCTCAATTTACATGTTGTGA
CTTGTATGCAGAGACTCCTTTCACTTTGCGTTTATCCGCATCTTCGCTCC
TTGATCCATCAGAGGAGACATGCAGCAGTAACGGTCTCCCCGGCATCGAG
GCAAGCGGCGTGTGCTGTGTGGCTGAGTGCCCTCAATGCGGTGGCTCGGG
CTGCGGATCCAAGGCCCGGGGGGTCGGTCTTGCTTCGAGTGACTGCTGCA
TTGGAGCCATTACATCCGCGGGTGTATCCTGCAATGACTCCGGCATGGCA
CCCTGCGTCATCGATACTGGTAGGTGTTTGTGCATAATGGCTTCGATCCA
CAAGAACTCAACCCCAAGATGCCCTGTCCACGAAATAACATAAACAAATA
TAGCGGCAGCGTTTAGATCGTTATACCACCCCCTCTTTTATGTATATTCC
GATAAAGCTGCATAGTGCGTGCACCATATGGACTACACACTGTAATGAAT
CTCACTTTTGCCACCCCGATGCCACTCGTCTGCGGCTATACGAAGTGTGC
GGGCCTGCGCTCACCATCACCTTGGAATGGTCGGAGAGCCTAAACGATCT
CGATCTCGCCGTGACGGAGCCCGATGGCACGTTGGTCAGATTCTCCAATA
TGGTTGGGGTAAGTAAGAGCTCAATCGGCACCGCTTGAAGAGAACATACT
CATCGTTTGTAGAACAGTCCCCGCTGTTTCGACTTTCTCTCGAAGTAGAA
GTAATGGATGGAATCTAAACATTGTGGCTTTAATGTAAAGACTAAACATC
CTTGAATGCCCCCCACAATCGGCGCCGACCCTTCACTTTCGCCTTCTTAT
GTTCTCACACAACGCTCCATCCTGATCGCCCTCTGGAACAAAAGAGCGCT
GGCTTCCTCGACATGGACATCAGAGAGGGTCCTGGCGTAGAAATCTACAC
CATCTTTAGCGGTCTCGACACTGACAGCGTCAGCGTACTCGGTGATTACA
AGATACAAGCAAGGCGCTTTTCTGGTCCGACGGACACGATGTGGACCCTC
GTCGCTACCCTTGTCGAGGAGGTGATCTTGGTCGAGACTGGCGACTTCAC
GGAGTCTGGCAATTCGGAAATCTTCACCGTTTCTGTCACCGACTACGACT
CCAGTTGCGAAGGCACTGAGCCCTTCCCCTCCGGTTCTAGGGGCGAAACG
TCGTCGGCCGAAGATAAACTACCTTAATACCACACCCCGGTTGATAGTCG
CATAGTTCCGGGGATGGGGGGTGTTATTGAAAGCCTTGGCCCCAATCTGT
TTTCGTTACAGGAAAGGGCTAGCTAGCGCTTAAGGCTGGGGACCGACGTA
CTTCAGCTAGGGCGCAGGAAAAGGGTAGGGGGGTAATATGTAAATTGTTT
CGGCATAATATGTTAATCTAGGCGTGTGGTGGAGTTTACCCACGCATGTA
CAATGCATATTATTGCCGAAAAATGTGCCCCCCGCACGGCTGGTTCTTAG
GATACAAACGAGCTCTTAGCCGTTTGCGTTACATGCATGGAACGTACAAA
AGTGGGAATCGAACGATGTCGAGGCCATCATCGCTTAATACGACAAGGAT
AACCATTTGCTTGATTTCAACATGTATCAGAGAAAAGGATGGAGGCAGAA
AATCTGAGAACGCACGAGTAATCATTTAAGGGGAATCCAAGCATAAAGCG
ATGTTATGAAAGTAAACATCGATTGGGATCCACTAGTTGCAAACTTATCG
TCTATCGGCACAGATCGTCGACGCGAAAAAAAATGCTTGTCCGTTTCAAG
TGCTCTCGTGGACGGCCGTGGCAGGTTCTGTACGACTGCTAAGCTTGGCA
AATTGAGACTCACGTTGATTTTATTTTATTTGTCTCATTTATGGCCGATG
GGCCCCAGCTTGCTGGGTTTCCCGTCCCACCTACCGCTGCCATAACATAT
GTGGTCACGAAGAATCTTCCCATCTCTCTCC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1522:55663..65393+

>mRNA_F-serratus_M_contig1522.3583.1 ID=mRNA_F-serratus_M_contig1522.3583.1|Name=mRNA_F-serratus_M_contig1522.3583.1|organism=Fucus serratus male|type=CDS|length=1842bp|location=Sequence derived from alignment at F-serratus_M_contig1522:55663..65393+ (Fucus serratus male)
ATGTGGTTTACGCAATGGATCTTCGTCATCTTGGGGCTCCTGATGGTTGC
CTCTAACAACGATGTGGTTTACGCAATGGATCTTCGTCATCTTGGGGCTC
CTGATGGTTGCCTCTAACAACGCTCAGGTGTGCAGCAATGGCATTGCTGG
CGTCGAGGGTTCCGACGCGTGCTGCGTAGTTGACTGCGGCACGTGTGGCG
GTTCGGGCTGCGGAAGCCGGGCCCGGGCTGCCGGCCTGACTCCGAACGAT
TGCTGTATTGGACGCATCAGGGAAACAAACGTGTTTTGCGACGACTCCAG
TACCGCGCCGTGCCTCATCAGCAGTGTTGCTCAGGTGTGCAGCAATGGCA
TTGCTGGCGTCGAGGGTTCCGACGCGTGCTGCGTAGTTGACTGCGGCACG
TGTGGCGGTTCGGGCTGCGGAAGCCGGGCCCGGGCTGCCGGCCTGACTCC
GAACGATTGCTGTATTGGACGCATCAGGGAAACAAACGTGTTTTGCGACG
ACTCCAGTACCGCGCCGTGCCTCATCAGCAGTGTTGAGGAGACATGCAGC
AGTAACGGTCTCCCCGGCATCGAGGCAAGCGGCGTGTGCTGTGTGGCTGA
GTGCCCTCAATGCGGTGGCTCGGGCTGCGGATCCAAGGCCCGGGGGGTCG
GTCTTGCTTCGAGTGACTGCTGCATTGGAGCCATTACATCCGCGGGTGTA
TCCTGCAATGACTCCGGCATGGCACCCTGCGTCATCGATACTGAGGAGAC
ATGCAGCAGTAACGGTCTCCCCGGCATCGAGGCAAGCGGCGTGTGCTGTG
TGGCTGAGTGCCCTCAATGCGGTGGCTCGGGCTGCGGATCCAAGGCCCGG
GGGGTCGGTCTTGCTTCGAGTGACTGCTGCATTGGAGCCATTACATCCGC
GGGTGTATCCTGCAATGACTCCGGCATGGCACCCTGCGTCATCGATACTG
TGTGCGGGCCTGCGCTCACCATCACCTTGGAATGGTCGGAGAGCCTAAAC
GATCTCGATCTCGCCGTGACGGAGCCCGATGGCACGTTGGTCAGATTCTC
CAATATGGTTGGGTGTGCGGGCCTGCGCTCACCATCACCTTGGAATGGTC
GGAGAGCCTAAACGATCTCGATCTCGCCGTGACGGAGCCCGATGGCACGT
TGGTCAGATTCTCCAATATGGTTGGGAGCGCTGGCTTCCTCGACATGGAC
ATCAGAGAGGGTCCTGGCGTAGAAATCTACACCATCTTTAGCGGTCTCGA
CACTGACAGCGTCAGCGTACTCGGTGATTACAAGATACAAGCAAGGCGCT
TTTCTGGTCCGACGGACACGATGTGGACCCTCGTCGCTACCCTTGTCGAG
GAGGTGATCTTGGTCGAGACTGGCGACTTCACGGAGTCTGGCAATTCGGA
AATCTTCACCGTTTCTGTCACCGACTACGACTCCAGTTGCGAAGGCACTG
AGCCCTTCCCCTCCGGTTCTAGGGGCGAAACGTCGTCGGCCGAAGATAAA
CTACCTTAAAGCGCTGGCTTCCTCGACATGGACATCAGAGAGGGTCCTGG
CGTAGAAATCTACACCATCTTTAGCGGTCTCGACACTGACAGCGTCAGCG
TACTCGGTGATTACAAGATACAAGCAAGGCGCTTTTCTGGTCCGACGGAC
ACGATGTGGACCCTCGTCGCTACCCTTGTCGAGGAGGTGATCTTGGTCGA
GACTGGCGACTTCACGGAGTCTGGCAATTCGGAAATCTTCACCGTTTCTG
TCACCGACTACGACTCCAGTTGCGAAGGCACTGAGCCCTTCCCCTCCGGT
TCTAGGGGCGAAACGTCGTCGGCCGAAGATAAACTACCTTAA
back to top