mRNA_F-serratus_M_contig1520.3580.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1520.3580.1
Unique NamemRNA_F-serratus_M_contig1520.3580.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1520.3580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1520contigF-serratus_M_contig1520:106192..106989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size468
Cds size444
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1520.3580.1prot_F-serratus_M_contig1520.3580.1Fucus serratus malepolypeptideF-serratus_M_contig1520 106192..106965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929506.99322-CDS-F-serratus_M_contig1520:106191..1062621622929506.99322-CDS-F-serratus_M_contig1520:106191..106262Fucus serratus maleCDSF-serratus_M_contig1520 106192..106262 -
1690962884.124754-CDS-F-serratus_M_contig1520:106191..1062621690962884.124754-CDS-F-serratus_M_contig1520:106191..106262Fucus serratus maleCDSF-serratus_M_contig1520 106192..106262 -
1622929507.0040488-CDS-F-serratus_M_contig1520:106592..1069651622929507.0040488-CDS-F-serratus_M_contig1520:106592..106965Fucus serratus maleCDSF-serratus_M_contig1520 106593..106965 -
1690962884.1330898-CDS-F-serratus_M_contig1520:106592..1069651690962884.1330898-CDS-F-serratus_M_contig1520:106592..106965Fucus serratus maleCDSF-serratus_M_contig1520 106593..106965 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929507.0154612-UTR-F-serratus_M_contig1520:106965..1069891622929507.0154612-UTR-F-serratus_M_contig1520:106965..106989Fucus serratus maleUTRF-serratus_M_contig1520 106966..106989 -
1690962884.14114-UTR-F-serratus_M_contig1520:106965..1069891690962884.14114-UTR-F-serratus_M_contig1520:106965..106989Fucus serratus maleUTRF-serratus_M_contig1520 106966..106989 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1520.3580.1

>prot_F-serratus_M_contig1520.3580.1 ID=prot_F-serratus_M_contig1520.3580.1|Name=mRNA_F-serratus_M_contig1520.3580.1|organism=Fucus serratus male|type=polypeptide|length=148bp
MVEDDCSDRAKEQAKKEFEGLSMNGAESMKEYIARAKSLALNIKYHDIEV
NDQEISRRVLNGLPPSYAPEKRNFALKTDFSLAELEGGLVRVEELNRSSD
GTDGNHALAAGFKARNGRWSGGRGVGRGPSRVCFRCGKHGHFMSECRA
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mRNA from alignment at F-serratus_M_contig1520:106192..106989-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1520.3580.1 ID=mRNA_F-serratus_M_contig1520.3580.1|Name=mRNA_F-serratus_M_contig1520.3580.1|organism=Fucus serratus male|type=mRNA|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig1520:106192..106989- (Fucus serratus male)
GAGGCATGGAAGATACTGAACAGTATGGTCGAGGATGACTGTAGTGATAG
GGCAAAAGAGCAGGCGAAGAAAGAATTTGAAGGACTGAGTATGAACGGTG
CGGAATCGATGAAAGAATACATTGCTCGCGCGAAGTCTCTAGCCCTTAAT
ATAAAGTATCACGACATTGAGGTAAATGATCAAGAGATCAGCCGCAGAGT
ATTGAATGGCCTTCCCCCCTCATATGCTCCCGAGAAGAGAAATTTTGCTT
TGAAAACAGATTTCAGTCTAGCTGAGCTGGAGGGTGGTCTCGTTCGCGTG
GAGGAGCTTAACAGGAGCTCGGACGGGACCGACGGCAACCATGCGCTGGC
CGCTGGCTTCAAAGCCAGAAACGGCAGGTGGAGCGGGGGACGTGGAGGTC
ACAACGGCGGCGGACGCGGCAAGCGCAACGGTAAAGGTCGCCCGCCGAAT
CAACGGCAGCCGCAACATCAGCCGCCGCATAACCAGCAACAGCAGCAATA
TCAGCCGCCGCATCAGCAGCAACAGCAGCAGTATCAGCCGCAACATCAGC
CGCCGATTCAGCAGCAACAGCAGCAGTATCAGTCGCGGCCCCAGCGAGAG
CAGCAGCCCGCGCATCAGCAGCAACAACGGCAATATCAGCAGCGGCACCA
GCAATATCAGCAACAGGAGCCGCAGCAGCAGTACCAGAGGTACCAGTCGC
GCCATCAGCCGCAACAGCATCATTCAGTGGGACGGGGTCCATCACGCGTT
TGTTTCAGGTGTGGTAAACACGGGCATTTTATGTCAGAGTGCCGTGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1520:106192..106989-

>mRNA_F-serratus_M_contig1520.3580.1 ID=mRNA_F-serratus_M_contig1520.3580.1|Name=mRNA_F-serratus_M_contig1520.3580.1|organism=Fucus serratus male|type=CDS|length=888bp|location=Sequence derived from alignment at F-serratus_M_contig1520:106192..106989- (Fucus serratus male)
ATGGTCGAGGATGACTGTAGTGATAGGGCAAAAGAGCAGGCGAAGAAAGA
ATTTGAAGGACTGAGTATGAACGGTGCGGAATCGATGAAAGAATACATTG
CTCGCGCGAAGTCTCTAGCCCTTAATATAAAGTATCACGACATTGAGGTA
AATGATCAAGAGATCAGCCGCAGAGTATTGAATGGCCTTCCCCCCTCATA
TGCTCCCGAGAAGAGAAATTTTGCTTTGAAAACAGATTTCAGTCTAGCTG
AGCTGGAGGGTGGTCTCGTTCGCGTGGAGGAGCTTAACAGGAGCTCGGAC
GGGACCGACGGCAACCATGCGCTGGCCGCTGGCTTCAAAGCCAGAAACGG
CAGGTGGAGCGGGGGACGTGGAGATGGTCGAGGATGACTGTAGTGATAGG
GCAAAAGAGCAGGCGAAGAAAGAATTTGAAGGACTGAGTATGAACGGTGC
GGAATCGATGAAAGAATACATTGCTCGCGCGAAGTCTCTAGCCCTTAATA
TAAAGTATCACGACATTGAGGTAAATGATCAAGAGATCAGCCGCAGAGTA
TTGAATGGCCTTCCCCCCTCATATGCTCCCGAGAAGAGAAATTTTGCTTT
GAAAACAGATTTCAGTCTAGCTGAGCTGGAGGGTGGTCTCGTTCGCGTGG
AGGAGCTTAACAGGAGCTCGGACGGGACCGACGGCAACCATGCGCTGGCC
GCTGGCTTCAAAGCCAGAAACGGCAGGTGGAGCGGGGGACGTGGAGTGGG
ACGGGGTCCATCACGCGTTTGTTTCAGGTGTGGTAAACACGGGCATTTTA
TGTCAGAGTGCCGTGCATGGGACGGGGTCCATCACGCGTTTGTTTCAGGT
GTGGTAAACACGGGCATTTTATGTCAGAGTGCCGTGCA
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