mRNA_F-serratus_M_contig152.3576.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig152.3576.1
Unique NamemRNA_F-serratus_M_contig152.3576.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig152.3576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig152contigF-serratus_M_contig152:644971..645810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size535
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig152.3576.1prot_F-serratus_M_contig152.3576.1Fucus serratus malepolypeptideF-serratus_M_contig152 644971..645698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929504.043243-CDS-F-serratus_M_contig152:644970..6451781622929504.043243-CDS-F-serratus_M_contig152:644970..645178Fucus serratus maleCDSF-serratus_M_contig152 644971..645178 +
1690962882.760761-CDS-F-serratus_M_contig152:644970..6451781690962882.760761-CDS-F-serratus_M_contig152:644970..645178Fucus serratus maleCDSF-serratus_M_contig152 644971..645178 +
1622929504.055209-CDS-F-serratus_M_contig152:645483..6456981622929504.055209-CDS-F-serratus_M_contig152:645483..645698Fucus serratus maleCDSF-serratus_M_contig152 645484..645698 +
1690962882.7718856-CDS-F-serratus_M_contig152:645483..6456981690962882.7718856-CDS-F-serratus_M_contig152:645483..645698Fucus serratus maleCDSF-serratus_M_contig152 645484..645698 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929504.0684793-UTR-F-serratus_M_contig152:645698..6458101622929504.0684793-UTR-F-serratus_M_contig152:645698..645810Fucus serratus maleUTRF-serratus_M_contig152 645699..645810 +
1690962882.7839239-UTR-F-serratus_M_contig152:645698..6458101690962882.7839239-UTR-F-serratus_M_contig152:645698..645810Fucus serratus maleUTRF-serratus_M_contig152 645699..645810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig152.3576.1

>prot_F-serratus_M_contig152.3576.1 ID=prot_F-serratus_M_contig152.3576.1|Name=mRNA_F-serratus_M_contig152.3576.1|organism=Fucus serratus male|type=polypeptide|length=141bp
MRSKFSLKSRTLTAKSKNQETKGLNLVTKGVGSASSSYLEPSTFDARSTW
TLEIPYLSDESTVFWSGHPSERDGSTAIIAVDTKGIEEQREKRWERARVV
TSAQNVVADDRKGRNQQQQSKRRLPQRRKNKKDSDAAPGT*
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mRNA from alignment at F-serratus_M_contig152:644971..645810+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig152.3576.1 ID=mRNA_F-serratus_M_contig152.3576.1|Name=mRNA_F-serratus_M_contig152.3576.1|organism=Fucus serratus male|type=mRNA|length=840bp|location=Sequence derived from alignment at F-serratus_M_contig152:644971..645810+ (Fucus serratus male)
ATGCGTTCAAAATTTTCTTTGAAGTCAAGAACGCTCACAGCTAAATCAAA
GAACCAGGAAACCAAGGGACTAAACCTGGTGACCAAAGGTGTTGGCAGTG
CGAGCTCTTCATATCTTGAACCTTCTACATTCGACGCTCGCTCTACGTGG
ACACTCGAAATACCGTATCTCTCCGATGAATCCACCGTCTTTTGGAGCGG
ACACCCTTGTAAGAGAAGGTGAGTGCAAAGAAAGCATTTCGTGCAGTAAG
AGCCCCATTTGCACGTTAGCCGGACACAGCTTCTCATGCCCAAAGGGCGG
GACTGGGTACTAATTGCGCGTGTGATTATTTATCTATGAAGACGCGGAGA
TGTTAACGTGTACACCCCCTTCAAAGAGGAGCCTAGGATTCAAAAAGGTT
AATAACCCGCTTGATATAGCGTCTAGAGAGGGGCTGGACGCCATCGCCGC
TGCTTTTCGCGCCGCTGTTTTGTTGTCGATATACCTGCGGCCGGTCCTAT
TCTGATGATGAAGCTGAACGTGATGGAAGCACGGCAATAATAGCTGTTGA
TACGAAGGGCATCGAGGAGCAGCGGGAGAAGAGATGGGAACGCGCGCGGG
TGGTAACGTCGGCCCAGAACGTAGTAGCAGATGATAGGAAGGGCCGGAAC
CAGCAGCAGCAATCGAAACGTCGTTTACCGCAGCGGCGCAAGAACAAGAA
GGATAGCGATGCTGCCCCGGGCACGTGAAAGGGGAGAAACCTCAGGAATC
GTTCTTTGAGTGGATCGGTAGAAGACTTGAAGCATGGCGGGACGATGAAC
GTGTGGGGCCGGGCGGAGGGTTGCCGCCAGTGGAGAGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig152:644971..645810+

>mRNA_F-serratus_M_contig152.3576.1 ID=mRNA_F-serratus_M_contig152.3576.1|Name=mRNA_F-serratus_M_contig152.3576.1|organism=Fucus serratus male|type=CDS|length=846bp|location=Sequence derived from alignment at F-serratus_M_contig152:644971..645810+ (Fucus serratus male)
ATGCGTTCAAAATTTTCTTTGAAGTCAAGAACGCTCACAGCTAAATCAAA
GAACCAGGAAACCAAGGGACTAAACCTGGTGACCAAAGGTGTTGGCAGTG
CGAGCTCTTCATATCTTGAACCTTCTACATTCGACGCTCGCTCTACGTGG
ACACTCGAAATACCGTATCTCTCCGATGAATCCACCGTCTTTTGGAGCGG
ACACCCTTATGCGTTCAAAATTTTCTTTGAAGTCAAGAACGCTCACAGCT
AAATCAAAGAACCAGGAAACCAAGGGACTAAACCTGGTGACCAAAGGTGT
TGGCAGTGCGAGCTCTTCATATCTTGAACCTTCTACATTCGACGCTCGCT
CTACGTGGACACTCGAAATACCGTATCTCTCCGATGAATCCACCGTCTTT
TGGAGCGGACACCCTTCTGAACGTGATGGAAGCACGGCAATAATAGCTGT
TGATACGAAGGGCATCGAGGAGCAGCGGGAGAAGAGATGGGAACGCGCGC
GGGTGGTAACGTCGGCCCAGAACGTAGTAGCAGATGATAGGAAGGGCCGG
AACCAGCAGCAGCAATCGAAACGTCGTTTACCGCAGCGGCGCAAGAACAA
GAAGGATAGCGATGCTGCCCCGGGCACGTGACTGAACGTGATGGAAGCAC
GGCAATAATAGCTGTTGATACGAAGGGCATCGAGGAGCAGCGGGAGAAGA
GATGGGAACGCGCGCGGGTGGTAACGTCGGCCCAGAACGTAGTAGCAGAT
GATAGGAAGGGCCGGAACCAGCAGCAGCAATCGAAACGTCGTTTACCGCA
GCGGCGCAAGAACAAGAAGGATAGCGATGCTGCCCCGGGCACGTGA
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