mRNA_F-serratus_M_contig152.3571.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig152.3571.1
Unique NamemRNA_F-serratus_M_contig152.3571.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig152.3571.1 vs. uniprot
Match: A0A6H5JJQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJQ5_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 7.250e-43
Identity = 95/214 (44.39%), Postives = 124/214 (57.94%), Query Frame = 1 
Query:    1 MELEGIPVTQVATVAFEAGLAAAISSETGNYTSDNSTALVEIDRSKTATGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADEGLATALNSALQSRTTEDCRCVAT---DNGGYDCSACEEGGAFSTVESIATAQ-GNYNLFSVE-GSGRSPVPVLRFVTTDTR---DEGVWDDFPGGRWIRGVLRTESYLHVAAIVLTIVIFTSI 618
            M+++GIPV QVAT AFEAGLA AIS+ETG+YT + S+ +V+ID S     DD                                     ++GL  ALN AL+SRTTE C CV     D GGYDCSACEEG  FST  SI TA  G Y+L SV+  SGRSPV +    + D+    D+  W D  GG+ IRG++R++SY+H+A +V+ IV+ TS+
Sbjct:  219 MDIDGIPVAQVATEAFEAGLAEAISAETGDYTDETSSVMVKIDHSTAFASDDRSTVTVEIVVASEADGYAVLTYIISFVEGTSSSVAEGNQGLVAALNQALESRTTEGCACVEVQVIDGGGYDCSACEEGAVFSTASSITTASPGGYDLLSVDRSSGRSPVSIFASASDDSDADDDDMFWSDLAGGKTIRGIIRSDSYVHMAGVVIAIVLSTSL 432
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BLAST of mRNA_F-serratus_M_contig152.3571.1 vs. uniprot
Match: D7FS58_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS58_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 6.890e-42
Identity = 97/214 (45.33%), Postives = 127/214 (59.35%), Query Frame = 1 
Query:    1 MELEGIPVTQVATVAFEAGLAAAISSETGNYTSDNSTALVEIDRSKTATGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADEGLATALNSALQSRTTEDCRCV---ATDNGGYDCSACEEGGAFSTVESIAT-AQGNYNLFSVE-GSGRSPVPVLRFVT--TDTRDEGV-WDDFPGGRWIRGVLRTESYLHVAAIVLTIVIFTSI 618
            M+++GIPV QVAT AFEAGLA AIS+ETG+YT + S+ +V+ID S  +  DD                                     ++GL  ALN AL+SRTTE C CV   A D GGYDCSACEEG  FST  SI T + G Y+L SV+  SGR PV V    +  +D  D+G+ W D  GG+ IRG++R++SY+H+A +V  IV+FTS+
Sbjct:  743 MDIDGIPVAQVATEAFEAGLAEAISAETGDYTDETSSVVVKIDHSTASASDDRSTVTVEIVVASEADGYAVLTYIISFVEGTSSSVAEGNQGLVAALNEALESRTTEGCACVEVQAIDGGGYDCSACEEGAVFSTASSITTMSPGGYDLLSVDRSSGRYPVSVFASASDNSDADDDGMFWSDLSGGKTIRGIIRSDSYVHMAGVVAAIVLFTSL 956
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig152.3571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJQ5_9PHAE7.250e-4344.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS58_ECTSI6.890e-4245.33Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig152contigF-serratus_M_contig152:462101..463686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size808
Cds size807
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929505.3183057-CDS-F-serratus_M_contig152:462100..4622171622929505.3183057-CDS-F-serratus_M_contig152:462100..462217Fucus serratus maleCDSF-serratus_M_contig152 462101..462217 +
1690962883.3944669-CDS-F-serratus_M_contig152:462100..4622171690962883.3944669-CDS-F-serratus_M_contig152:462100..462217Fucus serratus maleCDSF-serratus_M_contig152 462101..462217 +
1622929505.3391144-CDS-F-serratus_M_contig152:462996..4636861622929505.3391144-CDS-F-serratus_M_contig152:462996..463686Fucus serratus maleCDSF-serratus_M_contig152 462997..463686 +
1690962883.4031353-CDS-F-serratus_M_contig152:462996..4636861690962883.4031353-CDS-F-serratus_M_contig152:462996..463686Fucus serratus maleCDSF-serratus_M_contig152 462997..463686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig152.3571.1prot_F-serratus_M_contig152.3571.1Fucus serratus malepolypeptideF-serratus_M_contig152 462101..463686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig152.3571.1

>prot_F-serratus_M_contig152.3571.1 ID=prot_F-serratus_M_contig152.3571.1|Name=mRNA_F-serratus_M_contig152.3571.1|organism=Fucus serratus male|type=polypeptide|length=269bp
MELEGIPVTQVATVAFEAGLAAAISSETGNYTSDNSTALVEIDRSKTATG
DDVDRSSTVLVEISVASEADGYAVVTYVNAVAEGSSASADEGLATALNSA
LQSRTTEDCRCVATDNGGYDCSACEEGGAFSTVESIATAQGNYNLFSVEG
SGRSPVPVLRFVTTDTRDEGVWDDFPGGRWIRGVLRTESYLHVAAIVLTI
VIFTSICGCMLHWCFKYSNPVSPGPGILIIDSHEFDEIFGGGSKPQTPPR
SRSPTAGHKEDRCWGSPQP
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mRNA from alignment at F-serratus_M_contig152:462101..463686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig152.3571.1 ID=mRNA_F-serratus_M_contig152.3571.1|Name=mRNA_F-serratus_M_contig152.3571.1|organism=Fucus serratus male|type=mRNA|length=1586bp|location=Sequence derived from alignment at F-serratus_M_contig152:462101..463686+ (Fucus serratus male)
ATGGAGTTGGAAGGAATACCGGTCACGCAGGTCGCTACCGTGGCATTCGA
AGCGGGCTTAGCGGCGGCCATATCTTCTGAAACCGGAAACTACACGTCGG
ATAATTCCACTGCACTGGTAGGAGGCCTCTTGAATACAGATACATGTTCA
CGCATGTTTTCCCAAGCTTTTGCTTTGCGTGCGTACGGGCCAAAGCGAGG
AAGACAAACAGTTGTTTTTACAGTATCCCGCTGAGATTTGCCATGATCTG
CTTTCGTTTGGGAAAAGGGAGAATTGACAGCAGCAACCCTAGAATGTTGG
GATAAGATTGACAACAGCAACCAGGAAGAAGCAGATCATTTGATGATGAG
GCTTCCTTAAACACAGATCATAGATGAAATGTCAGCTGAAAAACATGACA
GAGTAGTATTTTGTCCTGATTCTGCTCTCTGGCCGACAGAGGATTACTAT
TGTCTGGCACCTGAGTGAACTACGACTTGTCAGTCAGGTTCGAAAAAAAA
TTACGTTCTCGCCTATTATCGTATTTCCATTGTTAAAAAATCAGGCAGAT
AGCATTCTGGATTATTTTATCGAGTGGTGTCGTTATACGGTCAGCATTCT
GTTCGGTTATTCTCATCTGGTATCGATAGCTCAGTATGGCCAGGCAAAGA
GGCTCAAGCAGAGGGGTTGGATTCCACCGGTCCGAGTCGAGTCCACTATG
ATAAGGGTCGTGTTAGAGGACGGGGTAAAACTCAGTTCTCTTTATTCCCG
TTGACGACGTGTAAGACCACAGCGTAAACGTCACTTGACAGTAATACTTC
TCAGTGCAACTGAAGCTTAATACAGTAATACTAAAAGTCCCCGCCAGGAG
AACACGCATCAACTCTACTTCCTCAACGCCCGGTCGCCCCGATCAGGTGG
AGATCGACCGATCTAAAACGGCAACCGGAGATGACGTCGACAGGAGCAGC
ACGGTGTTGGTCGAGATCTCCGTCGCCTCCGAGGCAGACGGTTACGCTGT
TGTTACCTACGTCAACGCCGTCGCGGAAGGCTCGTCCGCCTCTGCCGACG
AGGGCTTGGCGACGGCGCTGAACAGCGCTCTGCAAAGCCGCACCACCGAA
GACTGCCGCTGCGTGGCTACCGACAACGGCGGCTACGACTGCTCGGCCTG
CGAAGAGGGCGGGGCGTTTTCGACGGTGGAATCAATCGCCACGGCACAGG
GAAACTACAACCTTTTCTCCGTCGAAGGTTCCGGCCGATCCCCAGTCCCA
GTTCTGAGGTTCGTCACCACAGACACCCGCGACGAGGGCGTGTGGGACGA
CTTCCCCGGGGGCAGATGGATTCGAGGGGTCCTTCGAACGGAAAGCTATC
TCCACGTCGCCGCGATTGTGTTGACCATCGTGATATTTACCTCGATCTGC
GGCTGCATGCTGCACTGGTGCTTTAAATATTCGAATCCCGTGTCTCCTGG
CCCGGGCATTTTGATTATCGATTCGCACGAATTCGACGAAATTTTCGGTG
GCGGCAGCAAACCGCAGACGCCGCCCCGCTCGCGAAGCCCCACGGCGGGT
CACAAGGAAGACCGGTGCTGGGGATCGCCACAACCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig152:462101..463686+

>mRNA_F-serratus_M_contig152.3571.1 ID=mRNA_F-serratus_M_contig152.3571.1|Name=mRNA_F-serratus_M_contig152.3571.1|organism=Fucus serratus male|type=CDS|length=1614bp|location=Sequence derived from alignment at F-serratus_M_contig152:462101..463686+ (Fucus serratus male)
ATGGAGTTGGAAGGAATACCGGTCACGCAGGTCGCTACCGTGGCATTCGA
AGCGGGCTTAGCGGCGGCCATATCTTCTGAAACCGGAAACTACACGTCGG
ATAATTCCACTGCACTGATGGAGTTGGAAGGAATACCGGTCACGCAGGTC
GCTACCGTGGCATTCGAAGCGGGCTTAGCGGCGGCCATATCTTCTGAAAC
CGGAAACTACACGTCGGATAATTCCACTGCACTGGTGGAGATCGACCGAT
CTAAAACGGCAACCGGAGATGACGTCGACAGGAGCAGCACGGTGTTGGTC
GAGATCTCCGTCGCCTCCGAGGCAGACGGTTACGCTGTTGTTACCTACGT
CAACGCCGTCGCGGAAGGCTCGTCCGCCTCTGCCGACGAGGGCTTGGCGA
CGGCGCTGAACAGCGCTCTGCAAAGCCGCACCACCGAAGACTGCCGCTGC
GTGGCTACCGACAACGGCGGCTACGACTGCTCGGCCTGCGAAGAGGGCGG
GGCGTTTTCGACGGTGGAATCAATCGCCACGGCACAGGGAAACTACAACC
TTTTCTCCGTCGAAGGTTCCGGCCGATCCCCAGTCCCAGTTCTGAGGTTC
GTCACCACAGACACCCGCGACGAGGGCGTGTGGGACGACTTCCCCGGGGG
CAGATGGATTCGAGGGGTCCTTCGAACGGAAAGCTATCTCCACGTCGCCG
CGATTGTGTTGACCATCGTGATATTTACCTCGATCTGCGGCTGCATGCTG
CACTGGTGCTTTAAATATTCGAATCCCGTGTCTCCTGGCCCGGGCATTTT
GATTATCGATTCGCACGAATTCGACGAAATTTTCGGTGGCGGCAGCAAAC
CGCAGACGCCGCCCCGCTCGCGAAGCCCCACGGCGGGTCACAAGGAAGAC
CGGTGCTGGGGATCGCCACAACCAGTGGAGATCGACCGATCTAAAACGGC
AACCGGAGATGACGTCGACAGGAGCAGCACGGTGTTGGTCGAGATCTCCG
TCGCCTCCGAGGCAGACGGTTACGCTGTTGTTACCTACGTCAACGCCGTC
GCGGAAGGCTCGTCCGCCTCTGCCGACGAGGGCTTGGCGACGGCGCTGAA
CAGCGCTCTGCAAAGCCGCACCACCGAAGACTGCCGCTGCGTGGCTACCG
ACAACGGCGGCTACGACTGCTCGGCCTGCGAAGAGGGCGGGGCGTTTTCG
ACGGTGGAATCAATCGCCACGGCACAGGGAAACTACAACCTTTTCTCCGT
CGAAGGTTCCGGCCGATCCCCAGTCCCAGTTCTGAGGTTCGTCACCACAG
ACACCCGCGACGAGGGCGTGTGGGACGACTTCCCCGGGGGCAGATGGATT
CGAGGGGTCCTTCGAACGGAAAGCTATCTCCACGTCGCCGCGATTGTGTT
GACCATCGTGATATTTACCTCGATCTGCGGCTGCATGCTGCACTGGTGCT
TTAAATATTCGAATCCCGTGTCTCCTGGCCCGGGCATTTTGATTATCGAT
TCGCACGAATTCGACGAAATTTTCGGTGGCGGCAGCAAACCGCAGACGCC
GCCCCGCTCGCGAAGCCCCACGGCGGGTCACAAGGAAGACCGGTGCTGGG
GATCGCCACAACCA
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