mRNA_F-serratus_M_contig152.3570.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig152.3570.1
Unique NamemRNA_F-serratus_M_contig152.3570.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig152.3570.1 vs. uniprot
Match: A0A6H5JJQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJQ5_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.640e-40
Identity = 74/105 (70.48%), Postives = 94/105 (89.52%), Query Frame = 1
Query:    4 GWYPTGQATPSDIFNPSNALVKAMLVASGTAMASYESSSGTTTVLSSPPDGIQGFGRILLDSVLNLHGSVDLYVEDAIEMSHGEVHSYTVEMGRSSASSMDGNMK 318
            GWYP+G ATPS+IFNPSNAL+KAM+V SGTAMASY+SS+G+TT L SPPDGIQGFGR+LLDSVLN+ GSVDL+VED ++M+HG+V+S+ +EM   S+S+ DG+MK
Sbjct:    6 GWYPSGIATPSNIFNPSNALIKAMIVTSGTAMASYDSSAGSTT-LGSPPDGIQGFGRVLLDSVLNVRGSVDLFVEDWVDMAHGDVNSHLIEMDGVSSSAFDGDMK 109          
BLAST of mRNA_F-serratus_M_contig152.3570.1 vs. uniprot
Match: D7FS58_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS58_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 2.510e-39
Identity = 75/106 (70.75%), Postives = 94/106 (88.68%), Query Frame = 1
Query:    1 QGWYPTGQATPSDIFNPSNALVKAMLVASGTAMASYESSSGTTTVLSSPPDGIQGFGRILLDSVLNLHGSVDLYVEDAIEMSHGEVHSYTVEMGRSSASSMDGNMK 318
            QGWYP+G ATPS+IFNPSNALVKAM+V SGTAMASY+SS+G+TT L SPPD IQGFGR+LLDSVLN+ GSVDL+VED ++M+HG+V+S+ +EM   S+S+ DG+MK
Sbjct:  529 QGWYPSGIATPSNIFNPSNALVKAMIVTSGTAMASYDSSAGSTT-LGSPPDAIQGFGRVLLDSVLNVRGSVDLFVEDRVDMTHGDVNSHFIEMDGVSSSAFDGDMK 633          
BLAST of mRNA_F-serratus_M_contig152.3570.1 vs. uniprot
Match: A0A835YK17_9STRA (Subtilisin (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK17_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.440e-17
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    1 QGWYPTGQATPSDIFNPSNALVKAMLVASGTAMASYESSSGTTTVLSSPPDGIQGFGRILLDSVLNLHGSVDLYVEDAIEMS-HGEVHSYT 270
            QGWYP+G   PSDI NPS ALVKA+LV +   M +Y   + T   L + PDG QG+GR+LLD+ LN+ GSVD++ +D + M+  G V +YT
Sbjct:  359 QGWYPSGAPNPSDIHNPSGALVKAVLVNAAVPMTAYRGLAATVP-LGTGPDGYQGWGRVLLDAALNVAGSVDMHAQDMVYMNVTGMVKTYT 448          
BLAST of mRNA_F-serratus_M_contig152.3570.1 vs. uniprot
Match: A0A835Z5P2_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.410e-17
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    1 QGWYPTGQATPSDIFNPSNALVKAMLVASGTAMASYESSSGTTTVLSSPPDGIQGFGRILLDSVLNLHGSVDLYVEDAIEMSHGE---VHSYTVEMG 282
            QGWYP+G+  PSD++NPS ALVKA+LV     MA Y   + + T L + PDG QG+GRI LD+ L++ GSVDL+V D + +        +SYTV  G
Sbjct:  679 QGWYPSGRPNPSDVYNPSGALVKALLVNGAAPMARYRGRAESVT-LGAGPDGYQGWGRIQLDAALDIGGSVDLHVVDRVYVRAANFVATYSYTVRDG 774          
BLAST of mRNA_F-serratus_M_contig152.3570.1 vs. uniprot
Match: D7FS20_ECTSI (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS20_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 4.700e-12
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 QGWYPTGQATPSDIFNPSNALVKAMLVASGTAM--ASYESSSGTTTV-LSSPPDGIQGFGRILLDSVLNLHGSVDLYVEDAIEMSHGEVHSYTVEM 279
            +GWY TG    S  F+PS AL+KA+L+ S T M  A     SGT  V L++PPD  QGFGR+ + + LN++ +V ++ ED +E+  GE   Y V +
Sbjct:  714 EGWYNTGSKNESLGFDPSGALLKAVLINSATGMSFAGVNPDSGTLDVTLTTPPDTHQGFGRVTMINALNINSTVGIFFEDWVEIREGETIDYDVSL 809          
BLAST of mRNA_F-serratus_M_contig152.3570.1 vs. uniprot
Match: A0A7J4S7N1_9ARCH (S8 family serine peptidase (Fragment) n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A7J4S7N1_9ARCH)

HSP 1 Score: 63.5 bits (153), Expect = 1.680e-9
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    1 QGWYPTGQATPSDIFNPSNALVKAMLVASGTAMASYESSSGTTTVLSSPPDGIQGFGRILLDSVLNLHGSV--DLYVEDAIEMSHGEVHSYTVEMGRSSAS 297
            QGWYP+     +D F+PS AL++AML+ASG  +      +GT T  S+ P+  QGFGR+LL SVL L G       V++A  +  G+  +YT  +   +AS
Sbjct:  529 QGWYPSRTPVAADAFDPSAALMRAMLLASGQQL------TGTGTTASTWPNNQQGFGRVLLSSVLPLPGDPFDTQVVDNAAGLVTGQASTYTFHVAAGAAS 623          
BLAST of mRNA_F-serratus_M_contig152.3570.1 vs. uniprot
Match: A0A534KAH5_9EURY (Peptidase_S8 domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A534KAH5_9EURY)

HSP 1 Score: 58.2 bits (139), Expect = 1.360e-7
Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    4 GWYPTGQATPSDIFNPSNALVKAMLVASGTAMASYESSSGTTTVLSSP----PDGIQGFGRILLDSVLNLHGSVDLYVEDAIE----MSHGEVHSYTVEMGR 285
            GWYP  +  P++  NPS ALV+A+L+ASG  +      +G+ TV  SP    P+  QGFGR+LL +VL +  + D +    I+    +  G+   YT  +G+
Sbjct:  525 GWYPAARPVPANAMNPSAALVRAILIASGAQV------TGSGTVARSPSDTWPNNEQGFGRVLLTNVLPIAAAGDTFRTQVIDGTAGLLTGDASVYTFHVGQ 620          
BLAST of mRNA_F-serratus_M_contig152.3570.1 vs. uniprot
Match: A0A7V6ANV0_9BACT (Peptidase_S8 domain-containing protein n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A7V6ANV0_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 4.700e-7
Identity = 41/104 (39.42%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    1 QGWYPTGQATPSDIFNPSNALVKAMLVASGTAMASYESSSGTTTVLSSP-PDGIQGFGRILLDSVLNLH---GSVD--LYVEDAIE--MSHGEVHSYTVEMGRS 288
            +G+YPTG A PSD   PS AL+KAML+     M    +   T    SSP P   QG+GR++L+  +  +   G  D  L+VED      S G+VH+Y +  G S
Sbjct:  582 EGYYPTGNANPSDAMTPSGALMKAMLILGTRNMTGTYTIDATNNSGSSPAPSNGQGWGRVVLNDCMYFNDEWGEDDRKLWVEDVTSGFTSTGQVHTYFLNTGPS 685          
BLAST of mRNA_F-serratus_M_contig152.3570.1 vs. uniprot
Match: A0A534MSU1_9EURY (Peptidase_S8 domain-containing protein n=3 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A534MSU1_9EURY)

HSP 1 Score: 55.8 bits (133), Expect = 8.820e-7
Identity = 37/101 (36.63%), Postives = 54/101 (53.47%), Query Frame = 1
Query:    4 GWYPTGQATPSDIFNPSNALVKAMLVASGTAMASYESSSGTTTVLSSP----PDGIQGFGRILLDSVLNLHGSVDLY----VEDAIEMSHGEVHSYTVEMG 282
            GWYPTG     D  NPS AL++A+L+ASG      +  +G+  V  SP    P+  QGFGR+LL  VL +  + D +    V+    +  G+  +YT  +G
Sbjct:  585 GWYPTGAPVLGDSMNPSAALIRAVLIASG------QQVTGSGLVARSPTDTWPNNEQGFGRVLLSKVLPIAAAGDTFRTQVVDGTAGLLTGDEAAYTFHVG 679          
BLAST of mRNA_F-serratus_M_contig152.3570.1 vs. uniprot
Match: A0A5B8MRX2_9CHLO (Uncharacterized protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MRX2_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 3.060e-6
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   34 SDIFNPSNALVKAMLVASGTAMASYESSSGTTTVLSSPPDGIQGFGRILLDSVLNLHGSVDLYVEDAIEMSHGEVHSYTVEMG 282
            S   +PS AL+KA+L+     +  Y   S     ++  P   QGFGR+LL   L L  S  L+V+DA+ +S G+VHSY +E G
Sbjct:  159 SQFTHPSGALIKAVLLNGAKPLDGY---SEAGYPMNEVPSFEQGFGRVLLKRSLPLDSSFKLFVQDAVAISTGDVHSYCIETG 238          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig152.3570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JJQ5_9PHAE3.640e-4070.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS58_ECTSI2.510e-3970.75Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A835YK17_9STRA2.440e-1750.55Subtilisin (Fragment) n=1 Tax=Tribonema minus TaxI... [more]
A0A835Z5P2_9STRA6.410e-1748.45Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
D7FS20_ECTSI4.700e-1242.71Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7F... [more]
A0A7J4S7N1_9ARCH1.680e-940.59S8 family serine peptidase (Fragment) n=1 Tax=Ther... [more]
A0A534KAH5_9EURY1.360e-736.27Peptidase_S8 domain-containing protein n=1 Tax=Eur... [more]
A0A7V6ANV0_9BACT4.700e-739.42Peptidase_S8 domain-containing protein n=1 Tax=can... [more]
A0A534MSU1_9EURY8.820e-736.63Peptidase_S8 domain-containing protein n=3 Tax=Eur... [more]
A0A5B8MRX2_9CHLO3.060e-639.76Uncharacterized protein n=1 Tax=Chloropicon primus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig152contigF-serratus_M_contig152:460091..460790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.7
Seed ortholog evalue3e-08
Seed eggNOG ortholog3075.A0A087SRA4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Subtilase family
EggNOG OGs2QSWT@2759,34J3V@3041,383XF@33090,COG1404@1
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size319
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929505.2545984-CDS-F-serratus_M_contig152:460090..4602221622929505.2545984-CDS-F-serratus_M_contig152:460090..460222Fucus serratus maleCDSF-serratus_M_contig152 460091..460222 +
1690962883.3723497-CDS-F-serratus_M_contig152:460090..4602221690962883.3723497-CDS-F-serratus_M_contig152:460090..460222Fucus serratus maleCDSF-serratus_M_contig152 460091..460222 +
1622929505.2664304-CDS-F-serratus_M_contig152:460603..4607891622929505.2664304-CDS-F-serratus_M_contig152:460603..460789Fucus serratus maleCDSF-serratus_M_contig152 460604..460789 +
1690962883.383083-CDS-F-serratus_M_contig152:460603..4607891690962883.383083-CDS-F-serratus_M_contig152:460603..460789Fucus serratus maleCDSF-serratus_M_contig152 460604..460789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig152.3570.1prot_F-serratus_M_contig152.3570.1Fucus serratus malepolypeptideF-serratus_M_contig152 460091..460789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig152.3570.1

>prot_F-serratus_M_contig152.3570.1 ID=prot_F-serratus_M_contig152.3570.1|Name=mRNA_F-serratus_M_contig152.3570.1|organism=Fucus serratus male|type=polypeptide|length=106bp
QGWYPTGQATPSDIFNPSNALVKAMLVASGTAMASYESSSGTTTVLSSPP
DGIQGFGRILLDSVLNLHGSVDLYVEDAIEMSHGEVHSYTVEMGRSSASS
MDGNMK
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mRNA from alignment at F-serratus_M_contig152:460091..460790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig152.3570.1 ID=mRNA_F-serratus_M_contig152.3570.1|Name=mRNA_F-serratus_M_contig152.3570.1|organism=Fucus serratus male|type=mRNA|length=700bp|location=Sequence derived from alignment at F-serratus_M_contig152:460091..460790+ (Fucus serratus male)
CAGGGGTGGTACCCCACTGGCCAGGCAACGCCATCCGACATCTTTAACCC TTCCAATGCCCTTGTCAAGGCTATGCTCGTAGCTTCGGGAACGGCTATGG CGTCCTACGAGAGCTCGTCGGGCACGACAACGGTAATGCCTCCTGTTGGA AGAATACGCTAAGAAGTCATTTGTCCTCGCCCTCCTCTGCCCCGCCTGGC AAGGGCCAAAGTCATCCACCCGTTTGTGTACATCCCACGCGTTTGTCGAT AGTTTCTGCCTCTTGCCTTTCTTGTCTCGCCAAAGAGACGTCTTCACTTG ACGTGCACGAACTTGGGCAATCATCGTGCTTCTTACAACGATGTCCCGTC GGAAAGTTGTTGCAATCCTTTTATTGTTGGGGGTTAGCGCATTTCGAGAT GAGCGTATGGAGCAAGCCACGCACGCGAGAACCATCTGTTAATATTAATG TTAATATTAATATTGTTTTCTTCTTCTCGCGGCATTGCCTTTTCTTGCTT GCATGTTGATCAGGTCCTGAGCAGCCCACCAGACGGCATCCAGGGCTTCG GTCGCATTTTGCTGGACTCTGTCCTGAACTTGCATGGTTCTGTCGACCTG TACGTGGAAGACGCGATCGAAATGAGTCACGGAGAGGTACATAGCTACAC GGTAGAGATGGGCAGGTCTTCGGCGTCTTCGATGGACGGCAATATGAAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig152:460091..460790+

>mRNA_F-serratus_M_contig152.3570.1 ID=mRNA_F-serratus_M_contig152.3570.1|Name=mRNA_F-serratus_M_contig152.3570.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig152:460091..460790+ (Fucus serratus male)
CAGGGGTGGTACCCCACTGGCCAGGCAACGCCATCCGACATCTTTAACCC
TTCCAATGCCCTTGTCAAGGCTATGCTCGTAGCTTCGGGAACGGCTATGG
CGTCCTACGAGAGCTCGTCGGGCACGACAACGCAGGGGTGGTACCCCACT
GGCCAGGCAACGCCATCCGACATCTTTAACCCTTCCAATGCCCTTGTCAA
GGCTATGCTCGTAGCTTCGGGAACGGCTATGGCGTCCTACGAGAGCTCGT
CGGGCACGACAACGGTCCTGAGCAGCCCACCAGACGGCATCCAGGGCTTC
GGTCGCATTTTGCTGGACTCTGTCCTGAACTTGCATGGTTCTGTCGACCT
GTACGTGGAAGACGCGATCGAAATGAGTCACGGAGAGGTACATAGCTACA
CGGTAGAGATGGGCAGGTCTTCGGCGTCTTCGATGGACGGCAATATGAAG
GTCCTGAGCAGCCCACCAGACGGCATCCAGGGCTTCGGTCGCATTTTGCT
GGACTCTGTCCTGAACTTGCATGGTTCTGTCGACCTGTACGTGGAAGACG
CGATCGAAATGAGTCACGGAGAGGTACATAGCTACACGGTAGAGATGGGC
AGGTCTTCGGCGTCTTCGATGGACGGCAATATGAAG
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