mRNA_F-serratus_M_contig152.3569.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig152.3569.1
Unique NamemRNA_F-serratus_M_contig152.3569.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig152.3569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig152contigF-serratus_M_contig152:411042..412012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size457
Cds size456
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig152.3569.1prot_F-serratus_M_contig152.3569.1Fucus serratus malepolypeptideF-serratus_M_contig152 411042..412012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929503.9779487-CDS-F-serratus_M_contig152:411041..4112631622929503.9779487-CDS-F-serratus_M_contig152:411041..411263Fucus serratus maleCDSF-serratus_M_contig152 411042..411263 -
1690962882.726519-CDS-F-serratus_M_contig152:411041..4112631690962882.726519-CDS-F-serratus_M_contig152:411041..411263Fucus serratus maleCDSF-serratus_M_contig152 411042..411263 -
1622929503.9911993-CDS-F-serratus_M_contig152:411575..4117361622929503.9911993-CDS-F-serratus_M_contig152:411575..411736Fucus serratus maleCDSF-serratus_M_contig152 411576..411736 -
1690962882.7408266-CDS-F-serratus_M_contig152:411575..4117361690962882.7408266-CDS-F-serratus_M_contig152:411575..411736Fucus serratus maleCDSF-serratus_M_contig152 411576..411736 -
1622929504.003431-CDS-F-serratus_M_contig152:411939..4120121622929504.003431-CDS-F-serratus_M_contig152:411939..412012Fucus serratus maleCDSF-serratus_M_contig152 411940..412012 -
1690962882.751973-CDS-F-serratus_M_contig152:411939..4120121690962882.751973-CDS-F-serratus_M_contig152:411939..412012Fucus serratus maleCDSF-serratus_M_contig152 411940..412012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig152.3569.1

>prot_F-serratus_M_contig152.3569.1 ID=prot_F-serratus_M_contig152.3569.1|Name=mRNA_F-serratus_M_contig152.3569.1|organism=Fucus serratus male|type=polypeptide|length=152bp
MIHQARAAVKSIRACELSEYSNIPGTTGKTRSRPRQSTRFEGDTSGPGAG
TLELCWGKDRAGKNDGEGRLRSYCFTVKAGTDIASARNVVDFKGACSPAC
RCPCRSSFGDRKRASTKRRARGSTGGKRGTVESLGDVQRKPSAGLGGHRQ
QG
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mRNA from alignment at F-serratus_M_contig152:411042..412012-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig152.3569.1 ID=mRNA_F-serratus_M_contig152.3569.1|Name=mRNA_F-serratus_M_contig152.3569.1|organism=Fucus serratus male|type=mRNA|length=971bp|location=Sequence derived from alignment at F-serratus_M_contig152:411042..412012- (Fucus serratus male)
ATGATTCATCAAGCAAGGGCTGCAGTCAAGTCTATTCGAGCTTGTGAGCT
TTCCGAATATAGCAATATACCAGGTACAATTCAATGAGCTTTTCCAAAGT
TGCGTGATGTCTTTGAGGTGGGGGAGGGGGAAGGGGGGGAGGCGGTGTTG
TTGTCGGTCGGATCTTATTCTTTGTTGTTTTCGTGAGAATGTGATGTATC
TACGCACGCGAAGACAGCCGACTTCTCATACGCTGCCTGTCTTCTTTTGT
CTACAAACTCGTCCCGAACGTGTCAGGAACTACGGGAAAAACGAGATCTA
GACCTCGTCAGAGTACTCGCTTTGAGGGAGATACTAGCGGCCCTGGCGCA
GGAACGCTCGAGCTCTGCTGGGGTAAAGATCGGGCCGGAAAAAATGACGG
TGAGGGGCGTCTGCGGTCATACTGCTTCACGGTAAAGGTGAGCATCGCTG
CATCGAGCGTAACGAACGCATTCTAAAAGACGTTTATGCTGGGCAGTAGC
AGTCTACGTATGTGGTACTCCGTGTATTTTACTTTATCTCGTGTCCCCTT
AAAACATCAGCAGACACGATGTACGCGATGCTCTATGGATAGGTTCTGTT
CATAGCGTCTTTCTGAGAAGGATGGGTCATCGCGCGGCACTGTAATAGAG
CCACGCTATCACCTGCGCTCTCGTGAAATATTTCCAAGAATTTCACTCTC
TTTCTTTGGATAAATTTGCCATATCGTCATTGAACGCTCAACAACACAGG
CGGGCACGGACATTGCTTCGGCGAGGAACGTCGTGGACTTTAAGGGCGCT
TGCTCCCCTGCCTGTCGTTGCCCTTGTCGATCCAGCTTCGGCGACCGAAA
GCGGGCGTCTACTAAGCGTCGTGCTCGAGGTAGTACAGGCGGTAAAAGAG
GCACAGTCGAGTCACTCGGCGATGTCCAAAGAAAGCCCTCGGCGGGCCTT
GGTGGGCATCGTCAGCAGGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig152:411042..412012-

>mRNA_F-serratus_M_contig152.3569.1 ID=mRNA_F-serratus_M_contig152.3569.1|Name=mRNA_F-serratus_M_contig152.3569.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig152:411042..412012- (Fucus serratus male)
ATGATTCATCAAGCAAGGGCTGCAGTCAAGTCTATTCGAGCTTGTGAGCT
TTCCGAATATAGCAATATACCAGATGATTCATCAAGCAAGGGCTGCAGTC
AAGTCTATTCGAGCTTGTGAGCTTTCCGAATATAGCAATATACCAGGAAC
TACGGGAAAAACGAGATCTAGACCTCGTCAGAGTACTCGCTTTGAGGGAG
ATACTAGCGGCCCTGGCGCAGGAACGCTCGAGCTCTGCTGGGGTAAAGAT
CGGGCCGGAAAAAATGACGGTGAGGGGCGTCTGCGGTCATACTGCTTCAC
GGTAAAGGAACTACGGGAAAAACGAGATCTAGACCTCGTCAGAGTACTCG
CTTTGAGGGAGATACTAGCGGCCCTGGCGCAGGAACGCTCGAGCTCTGCT
GGGGTAAAGATCGGGCCGGAAAAAATGACGGTGAGGGGCGTCTGCGGTCA
TACTGCTTCACGGTAAAGGCGGGCACGGACATTGCTTCGGCGAGGAACGT
CGTGGACTTTAAGGGCGCTTGCTCCCCTGCCTGTCGTTGCCCTTGTCGAT
CCAGCTTCGGCGACCGAAAGCGGGCGTCTACTAAGCGTCGTGCTCGAGGT
AGTACAGGCGGTAAAAGAGGCACAGTCGAGTCACTCGGCGATGTCCAAAG
AAAGCCCTCGGCGGGCCTTGGTGGGCATCGTCAGCAGGGAGCGGGCACGG
ACATTGCTTCGGCGAGGAACGTCGTGGACTTTAAGGGCGCTTGCTCCCCT
GCCTGTCGTTGCCCTTGTCGATCCAGCTTCGGCGACCGAAAGCGGGCGTC
TACTAAGCGTCGTGCTCGAGGTAGTACAGGCGGTAAAAGAGGCACAGTCG
AGTCACTCGGCGATGTCCAAAGAAAGCCCTCGGCGGGCCTTGGTGGGCAT
CGTCAGCAGGGA
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