mRNA_F-serratus_M_contig1519.3562.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1519.3562.1
Unique NamemRNA_F-serratus_M_contig1519.3562.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1519.3562.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.770e-19
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:   64 SICRWALAEMTRNNHWQQTMLLQCSMPEVKSEFLHLCVELCRCHAPYERHSYYEEVP 234
            ++CRWAL +MT NN+WQ TMLL+CS+  V+ EFLHLCV+L R +APYERH YYEE P
Sbjct: 2091 TVCRWALEQMTANNYWQHTMLLRCSLQGVRFEFLHLCVDLVRSYAPYERHKYYEEDP 2147
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BLAST of mRNA_F-serratus_M_contig1519.3562.1 vs. uniprot
Match: A0A6H5KF55_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF55_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 9.450e-15
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   73 RWALAE--MTRNNHWQQTMLLQCSMPEVKSEFLHLCVELCRCHAPYERHSYYEEVP 234
            RW  A   MT NN+WQ TMLL+CS+  V+ EFLHLCV+L R +APYERH YYEE P
Sbjct:  405 RWFRASPTMTANNYWQHTMLLRCSLQGVRFEFLHLCVDLVRSYAPYERHKYYEEDP 460
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1519.3562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK75_ECTSI1.770e-1966.67Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KF55_9PHAE9.450e-1564.29USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1519contigF-serratus_M_contig1519:179361..186251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue6.1e-16
Seed eggNOG ortholog2880.D7FK75
KEGG koko:K11840,ko:K11853,ko:K11869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons2
Model size297
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929503.9197056-CDS-F-serratus_M_contig1519:179360..1794501622929503.9197056-CDS-F-serratus_M_contig1519:179360..179450Fucus serratus maleCDSF-serratus_M_contig1519 179361..179450 +
1690962882.6903186-CDS-F-serratus_M_contig1519:179360..1794501690962882.6903186-CDS-F-serratus_M_contig1519:179360..179450Fucus serratus maleCDSF-serratus_M_contig1519 179361..179450 +
1622929503.9353874-CDS-F-serratus_M_contig1519:186046..1862501622929503.9353874-CDS-F-serratus_M_contig1519:186046..186250Fucus serratus maleCDSF-serratus_M_contig1519 186047..186250 +
1690962882.70903-CDS-F-serratus_M_contig1519:186046..1862501690962882.70903-CDS-F-serratus_M_contig1519:186046..186250Fucus serratus maleCDSF-serratus_M_contig1519 186047..186250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1519.3562.1prot_F-serratus_M_contig1519.3562.1Fucus serratus malepolypeptideF-serratus_M_contig1519 179361..186250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1519.3562.1

>prot_F-serratus_M_contig1519.3562.1 ID=prot_F-serratus_M_contig1519.3562.1|Name=mRNA_F-serratus_M_contig1519.3562.1|organism=Fucus serratus male|type=polypeptide|length=98bp
RRRGKKGCLRRDYQLGQVAYLSICRWALAEMTRNNHWQQTMLLQCSMPEV
KSEFLHLCVELCRCHAPYERHSYYEEVPLAASLRVELPDTNGPLTSLA
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mRNA from alignment at F-serratus_M_contig1519:179361..186251+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1519.3562.1 ID=mRNA_F-serratus_M_contig1519.3562.1|Name=mRNA_F-serratus_M_contig1519.3562.1|organism=Fucus serratus male|type=mRNA|length=6891bp|location=Sequence derived from alignment at F-serratus_M_contig1519:179361..186251+ (Fucus serratus male)
CGCCGCAGAGGGAAGAAAGGGTGTCTTCGGCGGGACTACCAACTGGGTCA
GGTCGCATACCTTTCGATCTGCCGGTGGGCTCTGGCGGAGGTGCGTCCCT
GATGCGAACGGTTGTTCGGTCGCTGGTTTTTGTTTCGAGATGTGGTGTTT
TGGGGGGAGGGATGTTGTTTCTCGGTTACAGAGAGCCTACCCCTGCGATG
TGTTGTCAGGGTATAAACACTGTTTATACTAATAATACTGTGAATACTAT
TAATACTGATTATACTATCAATACTATTTATACTATCAGTACTACTAAAA
CTATTAAAATTGTCAATATTGTTTATACTATTAATACTGTTTGTCCTATC
AAAACTGTTTGCACTATCAATACTGTTTATACTGATCTTTTTATACTATC
AATACTGTTTATACTATTAATACTGTGTATACTAATAATAATATTAATAT
TATCAATACTACTGTGTATACTAATAATATTACTAACACTATCAATACTG
TTTATACTATCAATACTGTTGTGTATATCTCACTTATAGCCGATGGACCT
CATGATTACCGTCCTGCCTGTGGTCACAAAGGATTTTCCCATCTCTCCCC
GCGCCTTACATTTTTTTATCGCGATGCAAGTTCAGCAATCTTACAACTCG
TCAACCAAATGTTGAATTTTACTTACTCACGTTCCCACGCTTTCCGTTAC
GAAAGAAAGAACACAATCGAACTCACGACTTACGCACTAGCAAGTGTACA
GGTTACCTACTAGACCACTATTAAAACTATCAATACTGTTTATACTATCA
ATACTGTTTATACTATCAGTACTATGTTTACTATTAATAATATGTATATT
ATTAATACTATCAAGCTTATCAATACTGTTTATACTACTACTAGTGAGTC
TTCTTTCCCTCGGCGCTTTACGCGGAGCTTTTGATACAGTCTAGTCTATT
AATAGTCTAAATAGCTGTGTTGCTTTGTTGTTTTCTTCTGTGGTTTGATC
CTCTCGACTATAATAGTATTGAGACGTGCCACGTGATCGTTGGTCACTCA
CGATGCGGATAGGGTAGGTCTATGTTGACCAATAGGGGACCAGGATAGGT
TTCCTCAATTGATTTGTTGCATACCTGTTATGATACTCGAGTAGTTCATC
AGCGAGCACATGTGTGCTTGAGCCCCATCAATTCAGTGTGTGTTTCTGTT
CCCCAACCAAACCAACCCCAAGCACACTCCCTCTCGTGAGGCTGCCATAT
TTTCGTGGGTAAAGTTCATCCCTTATGCTAGCAGAAGAGGCTTGACTCGA
CTGGTTGGCACCCACCTTTGGTATGTCCCCGAGAGGTACGCTCTTATAGC
GTAGTTCTAGAAGTCTTCTTTTTTACGATTCTACGGCGGTCATCGGATAA
AATTTCGACTTGGACATCCGCCGAAGACTTCATGGACAAGGGGATTATTG
GTTAGCTTCGGCGCCTGCCCGTTCTTGGGATCGTGGCGCGCGTTGCTTTG
TGAGGAGGTTCATATTCGAGCAGGACGAGACTGCAGCGCTTTTTTGAAGA
ATCGATGGTTGGGTATAGCCTGACGGGAAATTTTCAGGGCTCTTCACGGT
ACACTTTTTTTGTTCGGTACAGATGGTTATGGTTTCCAAGAACCACGGTT
ACAAATGGTTCGCGGTTATGGTTTTCACATTATCGCGGTTGGAGCATGGA
TGGTTCCGGAAAACCTCGGTTTGCTGCGGTCCGGTTTACGGTTCCTGGTT
AATTCTGCGGTTCGGTTACGGTCCGGTTTTCGATTCCAGGTTAAGTCTGC
GGTTCGGTTTCGGTTCGGTTTGCTCTCAAAATCTTCCTTCCTGAACTGCG
ACATCTCCCATGCATTCACCGCTACGTAACAACTCTTCTATAGTTCTATA
TCCACCGTCTCCCGGGCAGCCGCCTCTTGTGCCGATTGCACATCGTTGAG
GCATTGGCTGCGTCTTTCTTGCTGCGCAGCAATGGTGGCGTTGTACCTTT
GAACCTCCGGTAGGCATCCCTGGTTCAACTTCAGAAACATCATTTGTTCC
ACCTTAAACGGACTCATGCTTGCCCGCAAAGTACCAATCAAAAACGACAG
CGCAGAAAAGTTGCGCTCGGCTTGGCAACTGGTCGCTTCGACCCCGTGGT
AAAGACGGGCAAGGAGTGCTAAATGGGGCAGATCCGGTGGCGCCACAACC
TCGCCCGTGCCCTGAGCAAGCGTCGACTCGCTCTTGCGGAGCCAAAAACC
TGGCAGCGAAAAGCCACACACGTCTGGCTCGACGTTTTGCCCTCGATAAT
TATTTAGTTCCTGTCGAAGGGCGACGTGGTGTGTAACAGGTTGTACTCCC
CCCCCTGTGCCCCATGGGAACTACTTCCATGTCCAGATGCAGCCAATCGG
GCTAGACGTCTTTGCTCCATGACTGAGGACACCCGCGGCAAAGTTACGGC
TGGAGTCGCCAACCCGGGAGCTGGCGCAGGGGCTGGGGCTGGTGCAGGGG
CTGGTGTCCTGCTAGAAGTCTGAGCGACGTTCCCGACGAAGCGATGCCCG
AGCTCTTCGATGTCCGAAATTGCCATCGTTTGAAGCGCATTGCCACCGCC
AATGCAATCGTGCTCGGACATCATCTTCCTCCTCGCATCGAGGAAGACGC
TGATGCGCTCAGTTGGGTTGAAAGCCCTTCCTAGGTCCTTGTCCTCCATG
ACATTTCGAAACACGTCGAATTTCCGAATGCACGCTGGGATGTGCCCTTT
TAATGTGGCTTGCGAGTGTTGACGTTCCCGATGAACCACTCCATGCGAAC
AAGGCACCGCACGGCTGTGTTTTTCCACGTTTGGAAACCTCCACCGAACA
CCGCACGGAGCATTTCCTAATGGGTGGTTCGAATTGTTGTATAACTTTCC
ACACCCATGAGTTCCTTTTCCTTTTCCCCGTCGGAGGAGCAATTATAGTT
ACCTTTGCGAGGTTTCCTTTCTGTCCGCGTGCTTCTGAAGGAAGAGTATC
CGCGCAAGGTGCAGGGGAATCATTGCTTTGGCTCATGCTCGTGACTCTCT
CCGCAGATCCTGCACCTCAAAACCACGCTTCTAACTTGTGAGGCTCTGCT
TACGTTCACGAAAAAACTTTCTGTCCTTACGCGTGTACCGAAAGGCTTCT
CCGCAACGCACAGTGCTGATGTATGTATAATGTCCGTCCGGATATTTTTC
TTCCGTATCGTTAATCGTATGATGTACGCGCTTCGTATAAACTGTTAATA
TTTTATATTTTATATTTTATATTTTGATGTAGGTATTACACGTCCTTCAC
GTCCTTCCGTATGTTTAATCGTATATTGTATAACGTCCCCACTTCGTATA
AACTATAAACTATTAATACTTAATATACAATATATACCTTATGGGCTGCA
TGACCGCGGTTTGGATAATATCTCGGTTTCTAAACGGTCCGGTTTACAGT
TACCACGGTTCGGTTCGGTTTGGTTTGGGATTTATGGCGGTTTTTGTAAA
TTTTCACGGTTCGTTAACGGTCCACGGTTATGGTTCTGAAAAATCGCGGT
TTGTAAACGGCACGGTTTAACCGCGGTTATGTACCGCGGTTTTGAAACCG
TGAAGACCCCTGGAAATTTTGTACGAGCGAATTGCCACGCCGTACGACAG
CGCTTCAAATCGCTGACTCCCGGGCGAAGCCGCCGGCTATGTGATGCCGT
GCCGGGATGAGGATATTTCGTCGAGGACGATTCGAGGTTATTGGAAGCTA
GGGGCGATGGATTGTCGGGAAGCGTCATGGAGCAGCTTGACGGAGAGCCC
CACGGAACGGAGAGTTCTACAGGACAACCATCGCCAGCTCTTTCCTCGTC
TTTTATCTTCTCAAGAAACAGTGGTACGCTTTTGACAAAGTAAAGTGACG
ATTCGAGGTTATTGGAAGCTAGGGGCGATGGATTGTCGGGAAGCGTCATG
GAGCAGCTTGACGGAGAGCCCCACGGAACGGAGAGTTCTACAGGACAACC
ATCGCCAGCTCTTTCCTCGTCTTTTATCTTCTCAAGAAACAGTGGTACGC
TTTTGACAAAGTATTGTTTAAACTTTGTTATACCGCTGTAGTGCAGAAAA
CAGTACCCAGTAGTCTAGTTTATAGCATCATCTTTCTCTAGTATTCTCTG
CATGCGTGCATCATTAGAATACTCGCGCAAAGCCTGCTGACTGTTGTTTG
TTCAGTGAGGGCTGCTTTCGAAATCTCGTATATACTACGCAGTAGCTGCT
TGTTTGAGTAAAGTCTCAGTTTGCGGCAAATGTTTAGATGGGGAATATAT
ACTATACTCTCGATTGCGAATGTGATGATCGCTGACTTGACTTGAGTACC
TCAATGTCTAATGTTGTACCGCTGTTGTACCTGATGACTGTTTTTCGCTC
GCAAGCTATACGAACAACTTGGCGTATTGGTTCAATGTTGATTGTTCCTC
CGAAATATATGATGTAGTCGTGATAGGATAATCAGAATTCGCTCACAATG
TCGTCTGTTATGCAGCACTTTTGATCTCGATGATGAAAAGCTTGCTTGCG
TCATGTTTAGGAGCAATATCTGATCCCGACGTTTCGGAATAAGAAGCCTT
GATTTAATTACGGTACGCAAGATGACTGAAATTCAGAGTTGAAAGATAAC
TGGTAGGACTTATAAGGACAAGCTGATCAAATATTTCTTGAGAGATCATC
CCGAAGTCATGACTGAGTAGTCTAGTGGTTTAGTGCTTCTAACGGGTGTT
AGTTGTGGCCATTGTAGATACTGCAGTACATGGCGAGGAGAGGTTCTCGG
AGACAACTCATTTAACATGTGAGATTTTGAATCACCAGGACAGTGATGCA
GTGTAGTGGTTTGAGTGGAATAGGTGCTATCCTCCCATGCATTATGCACC
TGAATTTGTGGTATGAAGGGGGGATGTGAGGAGTGAATCCCCGAATAGCA
TTTGACTCGAGGGTCAGCGGGGAAGAGGTAAGGCTCGCATGCTATTGTAC
ACAAAATTCCTGATTCGTGGTAATTAGGGGATGAGGTAGACCCTTACTAG
TATTCGACTCGAGGGTCAGCGGGGATGAGAGGATATCGCCCGTAAGCTAG
TATACCCGAATGTTGTGACCAGAGGGGAGGAGACTCCTCTCGCCGTCTCT
TCGAATAAAATAGGTTGATCGAGCTTTACTCTCAGTTCGTCTTAACCAGC
GGTTTTTGACCTTTGTCATTTCGCCTGATTACGATACCGTGATAATGAAA
TCATTTCTTGTCTTGATGGTTGATAATGAGGACCATTTTTCTGACAGTGC
AGTCGGAAAAATAGAGTTGCCCATCAAATATCAATAGCTAGATTTTAGTC
GCATGATATGTCAATTTGATTTGTTTGCAAAAGGTTGCAATGATTTGACT
TATATATGACATATGGTGGGAAATTACGCACCACTAAAGTTCAGATGGCG
ATCGTTAGTTGATTGATAGCAAATAATGCAGCGTAACATTTGAATATGCT
TGTTCTGAATTACACAGTAATTTTCCTTTGAGAGCTCGCTTCCCAGAAGA
ATATTTCAGTACATCAGCTTACAGGCATCGCGGCGAAGCATTTTCGTGTG
TTCGCGATTCACCTACGTTTTTCAATGAATTTGAATGACGAGTTTGTTTT
GAAGTTGCGGTGAATCGGCGATGATGTATGTATGTTGATTTATGTATGCT
TTTGAGCGCGTAATGCTTGTGTTATTGCACAGCTGGGGGGCTATTTTATA
TCTCGTAGGATATCAGGAATTAGGGGGGCTACTTTGTAGATACCTATCCG
ATCACTCGTAAGGGGGGCTGATCGTTGGTCACTCACGATGCGGATAGGGT
AGGTCTATGTTGACCAATAGGGGACCAGGATAGGTTTCCTCACTTGGTTT
GTTGCATACCTGTTATGATACTTGAGTAGTTCATCAGCGAGCACATGTGT
GCTTGAGCCCCATCAATTCAGTGTGTGTTTCTGTTCCCCAACCAAACCAA
CCCCAAGCACACTCCCTCTCGTGAGGCTGCCATATTTTCGTGGGTAAAGT
TCATCCCTTACCACGGACGGCTCTCCTCTCCTTTGAGCGCACCATGCTCC
TGAAAAACACAACACAACACAATATAGGCTGCACTGGAGAGGCATCGTGA
CACCTTTGCTAGTTATTATTATATCCGATAGTATGGATCTTCTGTTGGAG
AATTAGAGCTAACGGCAGACGGGAACAAAACAAACAGAACAGAGTAACGG
CAGACCGAAACGGGAGAGGGCAAGTAAAAATGGGGGGAACATGTAACGGC
AGTAACGGTAGTAATGGTACACCGGAACGGAGGGGGGAGGTAAAAATAAA
ACAATTAAATGAAGAAAACGAACGAAACAGAGTTGAAATACTTGACGGGG
AAGGACATTCTCAGTTTTTTTAATGCTGCGAATAGTAGAGTACTTAAAGT
CAGTCGTATTCCCACCATTTGATATTGTTAGTCCCAATCCCACAATACGA
TGATTTTTGTCCTGCCCTGTTTTATTTTATTTTTATTTTTTTCCCATTTG
TTTCTCGTCCGTTGACGGCTCCACATATACCGGAACACATGTAAATCTTC
TGAGCGCATCCACCCTAGTCAGGGGGGGGTGAAATATCAATAATATGTTG
TTTGTTGGTCTGTGTTGTTTTGCCCTCCTTCAAAAGATGACGAGGAACAA
CCACTGGCAGCAGACGATGCTGCTTCAGTGCAGCATGCCCGAAGTCAAGT
CCGAGTTCTTGCATCTTTGTGTGGAGCTCTGCCGCTGCCACGCGCCCTAC
GAGCGCCATTCGTACTACGAAGAGGTCCCGCTCGCCGCCTCCTTGAGAGT
AGAACTCCCTGATACAAATGGACCCCTCACGTCATTGGCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1519:179361..186251+

>mRNA_F-serratus_M_contig1519.3562.1 ID=mRNA_F-serratus_M_contig1519.3562.1|Name=mRNA_F-serratus_M_contig1519.3562.1|organism=Fucus serratus male|type=CDS|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig1519:179361..186251+ (Fucus serratus male)
CGCCGCAGAGGGAAGAAAGGGTGTCTTCGGCGGGACTACCAACTGGGTCA
GGTCGCATACCTTTCGATCTGCCGGTGGGCTCTGGCGGAGCGCCGCAGAG
GGAAGAAAGGGTGTCTTCGGCGGGACTACCAACTGGGTCAGGTCGCATAC
CTTTCGATCTGCCGGTGGGCTCTGGCGGAGATGACGAGGAACAACCACTG
GCAGCAGACGATGCTGCTTCAGTGCAGCATGCCCGAAGTCAAGTCCGAGT
TCTTGCATCTTTGTGTGGAGCTCTGCCGCTGCCACGCGCCCTACGAGCGC
CATTCGTACTACGAAGAGGTCCCGCTCGCCGCCTCCTTGAGAGTAGAACT
CCCTGATACAAATGGACCCCTCACGTCATTGGCCATGACGAGGAACAACC
ACTGGCAGCAGACGATGCTGCTTCAGTGCAGCATGCCCGAAGTCAAGTCC
GAGTTCTTGCATCTTTGTGTGGAGCTCTGCCGCTGCCACGCGCCCTACGA
GCGCCATTCGTACTACGAAGAGGTCCCGCTCGCCGCCTCCTTGAGAGTAG
AACTCCCTGATACAAATGGACCCCTCACGTCATTGGCC
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