mRNA_F-serratus_M_contig1519.3560.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1519.3560.1
Unique NamemRNA_F-serratus_M_contig1519.3560.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1519.3560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1519contigF-serratus_M_contig1519:86378..87147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929503.1333752-CDS-F-serratus_M_contig1519:86377..865181622929503.1333752-CDS-F-serratus_M_contig1519:86377..86518Fucus serratus maleCDSF-serratus_M_contig1519 86378..86518 +
1690962882.5446825-CDS-F-serratus_M_contig1519:86377..865181690962882.5446825-CDS-F-serratus_M_contig1519:86377..86518Fucus serratus maleCDSF-serratus_M_contig1519 86378..86518 +
1622929503.1480002-CDS-F-serratus_M_contig1519:87012..871471622929503.1480002-CDS-F-serratus_M_contig1519:87012..87147Fucus serratus maleCDSF-serratus_M_contig1519 87013..87147 +
1690962882.5561297-CDS-F-serratus_M_contig1519:87012..871471690962882.5561297-CDS-F-serratus_M_contig1519:87012..87147Fucus serratus maleCDSF-serratus_M_contig1519 87013..87147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1519.3560.1prot_F-serratus_M_contig1519.3560.1Fucus serratus malepolypeptideF-serratus_M_contig1519 86378..87147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1519.3560.1

>prot_F-serratus_M_contig1519.3560.1 ID=prot_F-serratus_M_contig1519.3560.1|Name=mRNA_F-serratus_M_contig1519.3560.1|organism=Fucus serratus male|type=polypeptide|length=92bp
DSNGPSSKGRPNTSLSEQAIDQANRLLRQLMQAVPRVIAEAKTDGHTGVQ
QPYCLEMLQLMTHLLSGSDTERKSLERTLPLFLENLFDLDR*
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mRNA from alignment at F-serratus_M_contig1519:86378..87147+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1519.3560.1 ID=mRNA_F-serratus_M_contig1519.3560.1|Name=mRNA_F-serratus_M_contig1519.3560.1|organism=Fucus serratus male|type=mRNA|length=770bp|location=Sequence derived from alignment at F-serratus_M_contig1519:86378..87147+ (Fucus serratus male)
GATTCGAATGGACCATCGTCTAAGGGACGACCGAACACCAGCTTGTCAGA
ACAAGCCATAGACCAGGCGAACCGGCTGCTGCGTCAGCTGATGCAGGCGG
TGCCGAGGGTCATTGCGGAGGCTAAAACTGACGGTCATACGGTACGTACA
CTATGTTTTTTCGGCCTTTGATATTTTTTCTAAGGCTCTCTTTATTTACT
CTATGCCATAGTAGGATTATATGAGACATGATATCAGATTTAAGGAGCCT
TCCAACAGCAGCGATCTGTACTATTAATACAATATAACTTTAAAACCCGT
GGAGGAACTTTTTTTTAAAGTCCTTGGCCCATCTGTTTATATATACAGTA
GACCATGAGCGGGATTGGCCACCGTGTAAAGTAGTTTCTTCGGGTTGGCA
ACCAATGCGCTGAATGTGAGAAACAACAACAACAACAACTATATAATGTG
GTGTAGCGAGTAACCCAGCACCGAGGACTGTTTTTTGTGTTGTCATAATC
GTATGTGTATGCTATCTCTCTGTCTCTTACCATAAATCTTgtaGTATTTT
ATTATGGTTGTATCGAATTCTCGACCACTATTTTAAGTACGTCATGCTTC
TTGTCTGTAATATGTCTACAATATGTATACACCAGGGAGTGCAGCAGCCA
TATTGCTTGGAGATGCTGCAGCTTATGACCCATCTCCTGAGCGGCAGCGA
CACGGAACGGAAGAGCCTGGAAAGGACCCTGCCCCTGTTCCTTGAAAACT
TATTCGACCTGGATAGGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1519:86378..87147+

>mRNA_F-serratus_M_contig1519.3560.1 ID=mRNA_F-serratus_M_contig1519.3560.1|Name=mRNA_F-serratus_M_contig1519.3560.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig1519:86378..87147+ (Fucus serratus male)
GATTCGAATGGACCATCGTCTAAGGGACGACCGAACACCAGCTTGTCAGA
ACAAGCCATAGACCAGGCGAACCGGCTGCTGCGTCAGCTGATGCAGGCGG
TGCCGAGGGTCATTGCGGAGGCTAAAACTGACGGTCATACGGATTCGAAT
GGACCATCGTCTAAGGGACGACCGAACACCAGCTTGTCAGAACAAGCCAT
AGACCAGGCGAACCGGCTGCTGCGTCAGCTGATGCAGGCGGTGCCGAGGG
TCATTGCGGAGGCTAAAACTGACGGTCATACGGGAGTGCAGCAGCCATAT
TGCTTGGAGATGCTGCAGCTTATGACCCATCTCCTGAGCGGCAGCGACAC
GGAACGGAAGAGCCTGGAAAGGACCCTGCCCCTGTTCCTTGAAAACTTAT
TCGACCTGGATAGGTGAGGAGTGCAGCAGCCATATTGCTTGGAGATGCTG
CAGCTTATGACCCATCTCCTGAGCGGCAGCGACACGGAACGGAAGAGCCT
GGAAAGGACCCTGCCCCTGTTCCTTGAAAACTTATTCGACCTGGATAGGT
GA
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