mRNA_F-serratus_M_contig151.3529.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig151.3529.1
Unique NamemRNA_F-serratus_M_contig151.3529.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig151.3529.1 vs. uniprot
Match: D7FJM9_ECTSI (Utp12 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJM9_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.050e-26
Identity = 72/126 (57.14%), Postives = 84/126 (66.67%), Query Frame = -2 
Query:   75 DRPSSAVLIATGSPASPGFTEVLFEDDAGALLPSVAVEGGVSPEQEREDDEPVGKKGPLTHVVGPGELGIRGKEKDSSADAGEGLRAED---------EDGRAAKRLRAGGGGEGDAGMTIAERLE 425
            +RPSSA+L+ATGS ASPGF E  FED+AG+LL S +V          ED+E  G KG   HVVGPGELGIRG EKDS A  GEG R ++          D RA KRL+AGGG E +AGMTIA+RLE
Sbjct:  323 ERPSSAILLATGSAASPGFVEASFEDEAGSLLSSSSVATAGGHADGEEDEEGTGDKGGPAHVVGPGELGIRGVEKDSVA--GEGARGDEMEXXXXXXXXDSRAPKRLKAGGGEE-EAGMTIADRLE 445
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BLAST of mRNA_F-serratus_M_contig151.3529.1 vs. uniprot
Match: A0A6H5KNN6_9PHAE (Utp12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN6_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.310e-23
Identity = 71/138 (51.45%), Postives = 83/138 (60.14%), Query Frame = -2 
Query:   36 DRPSSAVLIATGSPASPGFTEVLFEDDAGALLPSVAVEGGVSPEQEREDDEP-VGKKGPLTHVVGPGELGIRGKEKDSSADAG-------EGLRAEDEDGRAAKRLRAGGGGEGDAGMTIAERLEALSEAIDRDAETA 425
            +RPSSA+L+ATGS ASPGF E  FED+AG+LL                      G KG   HVVGPGELGIRG EKDS    G       +    ED D RA KRL+ GGG + +AGMTIA+RLEALS A+D +AE A
Sbjct:   39 ERPSSAILLATGSAASPGFAEASFEDEAGSLLXXXXXXXXXXXXXXXXXXXXGTGDKGGGAHVVGPGELGIRGVEKDSVGGGGARDDKMEDAGGREDSDSRAPKRLK-GGGEDEEAGMTIADRLEALSAAVDHEAERA 175
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig151.3529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJM9_ECTSI3.050e-2657.14Utp12 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KNN6_9PHAE1.310e-2351.45Utp12 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig151contigF-serratus_M_contig151:828..1255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size430
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929494.934129-CDS-F-serratus_M_contig151:827..12531622929494.934129-CDS-F-serratus_M_contig151:827..1253Fucus serratus maleCDSF-serratus_M_contig151 828..1253 +
1690962879.2124462-CDS-F-serratus_M_contig151:827..12531690962879.2124462-CDS-F-serratus_M_contig151:827..1253Fucus serratus maleCDSF-serratus_M_contig151 828..1253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig151.3529.1prot_F-serratus_M_contig151.3529.1Fucus serratus malepolypeptideF-serratus_M_contig151 828..1253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig151.3529.1

>prot_F-serratus_M_contig151.3529.1 ID=prot_F-serratus_M_contig151.3529.1|Name=mRNA_F-serratus_M_contig151.3529.1|organism=Fucus serratus male|type=polypeptide|length=142bp
PASPPRRFLAPTAVSASRSIASDRASSLSAIVMPASPSPPPPALNLFAAL
PSSSSARNPSPASAEESFSLPRMPSSPGPTTCVSGPFLPTGSSSSRSCSG
ETPPSTATDGSRAPASSSNNTSVKPGEAGDPVAMSTAEEGRS
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mRNA from alignment at F-serratus_M_contig151:828..1255+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig151.3529.1 ID=mRNA_F-serratus_M_contig151.3529.1|Name=mRNA_F-serratus_M_contig151.3529.1|organism=Fucus serratus male|type=mRNA|length=428bp|location=Sequence derived from alignment at F-serratus_M_contig151:828..1255+ (Fucus serratus male)
CCCGCTTCCCCTCCTCGGCGCTTCCTCGCCCCAACCGCGGTCTCGGCGTC
TCGATCAATCGCCTCGGATAGAGCCTCAAGCCTCTCAGCGATAGTCATGC
CGGCGTCTCCCTCTCCACCCCCACCCGCTCTCAACCTTTTTGCCGCCCTG
CCGTCCTCGTCTTCCGCTCGCAAcCCCTCGCCAGCGTCTGCCGAAGAGTC
TTTCTCCTTGCCTCGGATGCCCAGTTCGCCGGGACCAACCACGTGCGTCA
GCGGGCCCTTCTTGCCGACAGGTTCATCGTCCTCTCGCTCTTGCTCGGGG
GAGACCCCTCCCTCGACTGCGACAGATGGGAGCAGAGCCCCCGCGTCGTC
TTCGAATAACACCTCCGTAAAACCCGGTGAAGCGGGGGATCCGGTGGCGA
TGAGCACGGCAGAAGAAGGTCGGTCGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig151:828..1255+

>mRNA_F-serratus_M_contig151.3529.1 ID=mRNA_F-serratus_M_contig151.3529.1|Name=mRNA_F-serratus_M_contig151.3529.1|organism=Fucus serratus male|type=CDS|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig151:828..1255+ (Fucus serratus male)
CCCGCTTCCCCTCCTCGGCGCTTCCTCGCCCCAACCGCGGTCTCGGCGTC
TCGATCAATCGCCTCGGATAGAGCCTCAAGCCTCTCAGCGATAGTCATGC
CGGCGTCTCCCTCTCCACCCCCACCCGCTCTCAACCTTTTTGCCGCCCTG
CCGTCCTCGTCTTCCGCTCGCAAcCCCTCGCCAGCGTCTGCCGAAGAGTC
TTTCTCCTTGCCTCGGATGCCCAGTTCGCCGGGACCAACCACGTGCGTCA
GCGGGCCCTTCTTGCCGACAGGTTCATCGTCCTCTCGCTCTTGCTCGGGG
GAGACCCCTCCCTCGACTGCGACAGATGGGAGCAGAGCCCCCGCGTCGTC
TTCGAATAACACCTCCGTAAAACCCGGTGAAGCGGGGGATCCGGTGGCGA
TGAGCACGGCAGAAGAAGGTCGGTCGCCCGCTTCCCCTCCTCGGCGCTTC
CTCGCCCCAACCGCGGTCTCGGCGTCTCGATCAATCGCCTCGGATAGAGC
CTCAAGCCTCTCAGCGATAGTCATGCCGGCGTCTCCCTCTCCACCCCCAC
CCGCTCTCAACCTTTTTGCCGCCCTGCCGTCCTCGTCTTCCGCTCGCAAc
CCCTCGCCAGCGTCTGCCGAAGAGTCTTTCTCCTTGCCTCGGATGCCCAG
TTCGCCGGGACCAACCACGTGCGTCAGCGGGCCCTTCTTGCCGACAGGTT
CATCGTCCTCTCGCTCTTGCTCGGGGGAGACCCCTCCCTCGACTGCGACA
GATGGGAGCAGAGCCCCCGCGTCGTCTTCGAATAACACCTCCGTAAAACC
CGGTGAAGCGGGGGATCCGGTGGCGATGAGCACGGCAGAAGAAGGTCGGT
CG
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