mRNA_F-serratus_M_contig1507.3521.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1507.3521.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE) HSP 1 Score: 176 bits (447), Expect = 3.760e-50 Identity = 93/218 (42.66%), Postives = 132/218 (60.55%), Query Frame = 1
Query: 4 RALVGSLMWLPVMTGSDIAHALRACARHSHDPTPRHWKTLLQVAAHINATKEISLRFVPGSGLRLFMYADVDCAAPSND*KFVSGVAVMLGDTAIGWKRYT*KCVTTATCEAGCIALCDTSKEVLFMRAVLVFLQSERTGIRANGFGDNEGAKAIADNPSSASRSKHIDAKLHFIRGLIRAGEVRILHVGTSKKHADVLTKSLRRKMFLLHRAASTNL 657
R +GS+MW+ T DI A+RA ARH+H P RHWK ++++ A++ T+++ + + GSGL L +Y D A + D + VSG+A +G T I T V+ ++ EA IA + KE LF+RAVL F+ E +G DN+GA A+ NP S++RSKHID + HFIRGL R+GE+ I V TS++HADVLTK+ + HR NL
Sbjct: 163 REAIGSMMWVSTFTRPDICFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYA-DAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGEISIKFVSTSEQHADVLTKAHSKSSLQYHRRKLMNL 379
BLAST of mRNA_F-serratus_M_contig1507.3521.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE) HSP 1 Score: 170 bits (431), Expect = 3.720e-49 Identity = 87/215 (40.47%), Postives = 133/215 (61.86%), Query Frame = 1
Query: 1 YRALVGSLMWLPVMTGSDIAHALRACARHSHDPTPRHWKTLLQVAAHINATKEISLRFVPGSGLRL--FMYADVDCAAPSND*KFVSGVAVMLGDTAIGWKRYT*KCVTTATCEAGCIALCDTSKEVLFMRAVLVFLQSERTGIRANGFGDNEGAKAIADNPSSASRSKHIDAKLHFIRGLIRAGEVRILHVGTSKKHADVLTKSLRRKMFLLHR 639
+R +VGSLMW+ T +DI++A+RA ARHSH+P HWK ++ ++ T ++L+F S + + +Y D D A+ + D + VSG V + + W T KCV+ +T EA +A+ D KE LF+ +L FL+ + + DNEGA A+A+NP S+SRSKHID + HF+R L G + + HV + ++HAD+LTK+L R +F +HR
Sbjct: 36 FREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHR 250
BLAST of mRNA_F-serratus_M_contig1507.3521.1 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE) HSP 1 Score: 168 bits (425), Expect = 2.970e-48 Identity = 86/218 (39.45%), Postives = 129/218 (59.17%), Query Frame = 1
Query: 4 RALVGSLMWLPVMTGSDIAHALRACARHSHDPTPRHWKTLLQVAAHINATKEISLRFVPGSGLRLFMYADVDCAAPSND*KFVSGVAVMLGDTAIGWKRYT*KCVTTATCEAGCIALCDTSKEVLFMRAVLVFLQSERTGIRANGFGDNEGAKAIADNPSSASRSKHIDAKLHFIRGLIRAGEVRILHVGTSKKHADVLTKSLRRKMFLLHRAASTNL 657
R +GS+MW+ + D++ A+RA ARH+H P RHW + ++ ++ T+++ + + GSGL L +Y D A + D + VSG+A +G T + T V+ + EA IA D KE LF+RAV F+ E +G DN+GA A+ NP S+ R+KHID + HFIRGL R+G++ + V T+++HAD+LTK+L R HR TNL
Sbjct: 40 REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA-DTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSATEAEYIAAEDGVKEALFVRAVQSFVVPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRASLQYHRRKPTNL 256
BLAST of mRNA_F-serratus_M_contig1507.3521.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE) HSP 1 Score: 176 bits (446), Expect = 3.050e-48 Identity = 91/218 (41.74%), Postives = 134/218 (61.47%), Query Frame = 1
Query: 4 RALVGSLMWLPVMTGSDIAHALRACARHSHDPTPRHWKTLLQVAAHINATKEISLRFVPGSGLRLFMYADVDCAAPSND*KFVSGVAVMLGDTAIGWKRYT*KCVTTATCEAGCIALCDTSKEVLFMRAVLVFLQSERTGIRANGFGDNEGAKAIADNPSSASRSKHIDAKLHFIRGLIRAGEVRILHVGTSKKHADVLTKSLRRKMFLLHRAASTNL 657
R +GS+MW+ + DI+ A+RA ARH+H P RHWK ++++ A++ T+++ + + GSGL L +Y D A + D + VSG+A +G T I T V+ ++ EA IA + KE LF+RAVL F+ E +G DN+GA A+ NP S++RSKHID + HFIRGL R+G++ I V TS++HAD+LTK+L + HR NL
Sbjct: 378 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYA-DAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 594
BLAST of mRNA_F-serratus_M_contig1507.3521.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 175 bits (443), Expect = 4.300e-48 Identity = 90/219 (41.10%), Postives = 134/219 (61.19%), Query Frame = 1
Query: 4 RALVGSLMWLPVMTGSDIAHALRACARHSHDPTPRHWKTLLQVAAHINATKEISLRFVPGSGLRLFMYADVDCAAPSND*KFVSGVAVMLGDTAIGWKRYT*KCVTTATCEAGCIALCDTSKEVLFMRAVLVFLQSERTGIRANGFGDNEGAKAIADNPSSASRSKHIDAKLHFIRGLIRAGEVRILHVGTSKKHADVLTKSLRRKMFLLHRAASTNLS 660
R +GS+MW+ + DI+ A+RA ARH+H P RHWK ++++ A++ T+++ + + GSGL L +Y D A + D + VSG+A +G T I T V+ ++ EA IA + KE LF+RAVL F+ E +G DN+GA A+ NP S++RSKHID + HFIRGL R+G++ I V TS++HAD+LTK+L + HR N +
Sbjct: 291 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYA-DAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNFA 508
BLAST of mRNA_F-serratus_M_contig1507.3521.1 vs. uniprot
Match: A0A6H5J8M4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M4_9PHAE) HSP 1 Score: 166 bits (421), Expect = 7.080e-48 Identity = 87/216 (40.28%), Postives = 132/216 (61.11%), Query Frame = 1
Query: 1 YRALVGSLMWLPVMTGSDIAHALRACARHSHDPTPRHWKTLLQVAAHINATKEISLRFVPGS---GLRLFMYADVDCAAPSND*KFVSGVAVMLGDTAIGWKRYT*KCVTTATCEAGCIALCDTSKEVLFMRAVLVFLQSERTGIRANGFGDNEGAKAIADNPSSASRSKHIDAKLHFIRGLIRAGEVRILHVGTSKKHADVLTKSLRRKMFLLHR 639
+R +VG LMW+ T DI++A+RA ARHSH+P R WK ++ ++ AT ++L++ S + +Y D D A+ + D + VSG V++ + W +T KCV+ +T EA +A+ D KE LF+ +L FL+ + + DNEGA A+A+NP S+ RSKHID + HF+R L G + I HV + K+HAD+LTK+L R +F +HR
Sbjct: 17 FREVVGCLMWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYLLATAHLTLKYKRDSTVDDVGTLVYVDADFASKATDRRSVSGALVIVAACLVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAENPLSSCRSKHIDVRHHFLRNLTEEGVIEITHVPSEKQHADILTKALPRSIFEVHR 232
BLAST of mRNA_F-serratus_M_contig1507.3521.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE) HSP 1 Score: 166 bits (420), Expect = 8.420e-48 Identity = 88/222 (39.64%), Postives = 127/222 (57.21%), Query Frame = 1
Query: 1 YRALVGSLMWLPVMTGSDIAHALRACARHSHDPTPRHWKTLLQVAAHINATKEISLRFVPGSGLRL--FMYADVDCAAPSND*KFVSGVAVMLGDTAIGWKRYT*KCVTTATCEAGCIALCDTSKEVLFMRAVLVFLQSERTGIRANGFGDNEGAKAIADNPSSASRSKHIDAKLHFIRGLIRAGEVRILHVGTSKKHADVLTKSLRRKMFLLHRAASTNLS 660
+R +VG LMW+ T DI++A+RA ARHSH+P HWK ++ ++ T +SL F S + + +Y D A+ + D + VSG V + + W T KCV +T EA +A+ D KE LF +L FL+ DNEGA A+ADNP S+ R KHID + HF+R L G ++I HV + ++HAD+LTK+L R++F +HR LS
Sbjct: 11 FREVVGCLMWIACQTRPDISNAVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVAADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRELFEVHRNFVLGLS 232
BLAST of mRNA_F-serratus_M_contig1507.3521.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE) HSP 1 Score: 168 bits (425), Expect = 1.990e-47 Identity = 85/215 (39.53%), Postives = 130/215 (60.47%), Query Frame = 1
Query: 1 YRALVGSLMWLPVMTGSDIAHALRACARHSHDPTPRHWKTLLQVAAHINATKEISLRFVPGSGL--RLFMYADVDCAAPSND*KFVSGVAVMLGDTAIGWKRYT*KCVTTATCEAGCIALCDTSKEVLFMRAVLVFLQSERTGIRANGFGDNEGAKAIADNPSSASRSKHIDAKLHFIRGLIRAGEVRILHVGTSKKHADVLTKSLRRKMFLLHR 639
+R +VGSLMW+ T DI++ALRA RHSH+P HWK ++ ++ T ++L+F P + + +Y D D A+ +ND + VSG V++ + W T KCV+ + EA A+ D K+ LF+ +L FL+ + + DNE A A+A+NP S+SRSKHID + HF+R L G + + HV + ++HAD+LTK+L R +F +HR
Sbjct: 107 FREVVGSLMWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSISEAEYFAMGDGVKKALFVNGMLQFLRPSANPRKIDVLEDNEEAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHR 321
BLAST of mRNA_F-serratus_M_contig1507.3521.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE) HSP 1 Score: 176 bits (446), Expect = 4.810e-47 Identity = 91/218 (41.74%), Postives = 134/218 (61.47%), Query Frame = 1
Query: 4 RALVGSLMWLPVMTGSDIAHALRACARHSHDPTPRHWKTLLQVAAHINATKEISLRFVPGSGLRLFMYADVDCAAPSND*KFVSGVAVMLGDTAIGWKRYT*KCVTTATCEAGCIALCDTSKEVLFMRAVLVFLQSERTGIRANGFGDNEGAKAIADNPSSASRSKHIDAKLHFIRGLIRAGEVRILHVGTSKKHADVLTKSLRRKMFLLHRAASTNL 657
R +GS+MW+ + DI+ A+RA ARH+H P RHWK ++++ A++ T+++ + + GSGL L +Y D A + D + VSG+A +G T I T V+ ++ EA IA + KE LF+RAVL F+ E +G DN+GA A+ NP S++RSKHID + HFIRGL R+G++ I V TS++HAD+LTK+L + HR NL
Sbjct: 1357 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYA-DAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 1573
BLAST of mRNA_F-serratus_M_contig1507.3521.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 176 bits (445), Expect = 5.420e-47 Identity = 88/215 (40.93%), Postives = 134/215 (62.33%), Query Frame = 1
Query: 1 YRALVGSLMWLPVMTGSDIAHALRACARHSHDPTPRHWKTLLQVAAHINATKEISLRFVPGSGL--RLFMYADVDCAAPSND*KFVSGVAVMLGDTAIGWKRYT*KCVTTATCEAGCIALCDTSKEVLFMRAVLVFLQSERTGIRANGFGDNEGAKAIADNPSSASRSKHIDAKLHFIRGLIRAGEVRILHVGTSKKHADVLTKSLRRKMFLLHR 639
+R +VGSLMW+ T DI++A+RA ARHSH+P HWK ++ ++ T ++L+F P + + +Y D D A+ +ND + VSG V++ + W T KCV+ +T EA +A+ D KE LF+ +L FL+ + + DNEGA A+A+NP S+SRSKHID + HF+R L G + + HV + ++HAD+LTK+L R +F +HR
Sbjct: 738 FREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHR 952 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1507.3521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1507.3521.1 >prot_F-serratus_M_contig1507.3521.1 ID=prot_F-serratus_M_contig1507.3521.1|Name=mRNA_F-serratus_M_contig1507.3521.1|organism=Fucus serratus male|type=polypeptide|length=98bp MRAVLVFLQSERTGIRANGFGDNEGAKAIADNPSSASRSKHIDAKLHFIRback to top mRNA from alignment at F-serratus_M_contig1507:81634..82308- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1507.3521.1 ID=mRNA_F-serratus_M_contig1507.3521.1|Name=mRNA_F-serratus_M_contig1507.3521.1|organism=Fucus serratus male|type=mRNA|length=675bp|location=Sequence derived from alignment at F-serratus_M_contig1507:81634..82308- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1507:81634..82308- >mRNA_F-serratus_M_contig1507.3521.1 ID=mRNA_F-serratus_M_contig1507.3521.1|Name=mRNA_F-serratus_M_contig1507.3521.1|organism=Fucus serratus male|type=CDS|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig1507:81634..82308- (Fucus serratus male)back to top |