mRNA_F-serratus_M_contig150.3501.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig150.3501.1
Unique NamemRNA_F-serratus_M_contig150.3501.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig150.3501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig150contigF-serratus_M_contig150:541102..541727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size627
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929485.8317616-UTR-F-serratus_M_contig150:541101..5413461622929485.8317616-UTR-F-serratus_M_contig150:541101..541346Fucus serratus maleUTRF-serratus_M_contig150 541102..541346 +
1690962875.078385-UTR-F-serratus_M_contig150:541101..5413461690962875.078385-UTR-F-serratus_M_contig150:541101..541346Fucus serratus maleUTRF-serratus_M_contig150 541102..541346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929485.867704-CDS-F-serratus_M_contig150:541346..5417271622929485.867704-CDS-F-serratus_M_contig150:541346..541727Fucus serratus maleCDSF-serratus_M_contig150 541347..541727 +
1690962875.0870755-CDS-F-serratus_M_contig150:541346..5417271690962875.0870755-CDS-F-serratus_M_contig150:541346..541727Fucus serratus maleCDSF-serratus_M_contig150 541347..541727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig150.3501.1prot_F-serratus_M_contig150.3501.1Fucus serratus malepolypeptideF-serratus_M_contig150 541347..541727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig150.3501.1

>prot_F-serratus_M_contig150.3501.1 ID=prot_F-serratus_M_contig150.3501.1|Name=mRNA_F-serratus_M_contig150.3501.1|organism=Fucus serratus male|type=polypeptide|length=127bp
MASSCMYVCVCIFIKLHITAQSGPVILVILLSLVLILPRGNQWNLLRKPL
IRRDKGDTLSLLVQFLLEPGVPCAPPPASLLLSRLSKLAATGPTLSFLHL
FLFPPKSFPFFTWRLQLFSGFLRFSAS
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mRNA from alignment at F-serratus_M_contig150:541102..541727+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig150.3501.1 ID=mRNA_F-serratus_M_contig150.3501.1|Name=mRNA_F-serratus_M_contig150.3501.1|organism=Fucus serratus male|type=mRNA|length=626bp|location=Sequence derived from alignment at F-serratus_M_contig150:541102..541727+ (Fucus serratus male)
CCTGCCCCTCGGACCCAGTTACGCCCTCGGTACGATGCGCTTGTACAGAC
ATCGGACCTTGCGAACGGAACTGTCGGGTACTCGCAAGTGCCGCCCCCTG
TCTGCAGAGATGGTGACGCGTGCGGAATGAAAGAGCCTGCTGTAAAACGA
AAGAGAATCGGCGCCGAAGACGTGCTACTTCCGTCCCTTCCGCCAGATGT
TGGGACTCGTTGGGGTGTGTCTCCGACCTGTGTTGTACCCGTCTGATGGC
GAGCTCTTGTATGTATGTATGTGTATGTATATTTATCAAATTGCACATAA
CCGCGCAATCCGGCCCTGTCATCCTAGTCATTCTATTGTCACTCGTATTG
ATCCTCCCAAGGGGGAATCAATGGAACTTATTACGAAAACCTCTGATCAG
ACGCGACAAAGGGGACACACTCTCTTTACTTGTACAGTTCTTACTTGAGC
CCGGAGTACCTTGTGCTCCCCCCCCTGCTTCCTTGTTACTCTCTAGACTA
TCTAAATTGGCAGCTACAGGACCAACCCTTTCTTTTCTACATCTTTTCCT
CTTTCCACCGAAGTCTTTTCCGTTTTTCACTTGGCGTCTACAACTATTTA
GCGGTTTCTTGCGCTTCTCAGCCTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig150:541102..541727+

>mRNA_F-serratus_M_contig150.3501.1 ID=mRNA_F-serratus_M_contig150.3501.1|Name=mRNA_F-serratus_M_contig150.3501.1|organism=Fucus serratus male|type=CDS|length=762bp|location=Sequence derived from alignment at F-serratus_M_contig150:541102..541727+ (Fucus serratus male)
ATGGCGAGCTCTTGTATGTATGTATGTGTATGTATATTTATCAAATTGCA
CATAACCGCGCAATCCGGCCCTGTCATCCTAGTCATTCTATTGTCACTCG
TATTGATCCTCCCAAGGGGGAATCAATGGAACTTATTACGAAAACCTCTG
ATCAGACGCGACAAAGGGGACACACTCTCTTTACTTGTACAGTTCTTACT
TGAGCCCGGAGTACCTTGTGCTCCCCCCCCTGCTTCCTTGTTACTCTCTA
GACTATCTAAATTGGCAGCTACAGGACCAACCCTTTCTTTTCTACATCTT
TTCCTCTTTCCACCGAAGTCTTTTCCGTTTTTCACTTGGCGTCTACAACT
ATTTAGCGGTTTCTTGCGCTTCTCAGCCTCCATGGCGAGCTCTTGTATGT
ATGTATGTGTATGTATATTTATCAAATTGCACATAACCGCGCAATCCGGC
CCTGTCATCCTAGTCATTCTATTGTCACTCGTATTGATCCTCCCAAGGGG
GAATCAATGGAACTTATTACGAAAACCTCTGATCAGACGCGACAAAGGGG
ACACACTCTCTTTACTTGTACAGTTCTTACTTGAGCCCGGAGTACCTTGT
GCTCCCCCCCCTGCTTCCTTGTTACTCTCTAGACTATCTAAATTGGCAGC
TACAGGACCAACCCTTTCTTTTCTACATCTTTTCCTCTTTCCACCGAAGT
CTTTTCCGTTTTTCACTTGGCGTCTACAACTATTTAGCGGTTTCTTGCGC
TTCTCAGCCTCC
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