mRNA_F-serratus_M_contig150.3491.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig150.3491.1
Unique NamemRNA_F-serratus_M_contig150.3491.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig150.3491.1 vs. uniprot
Match: D7FIP9_ECTSI (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP9_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.150e-31
Identity = 69/114 (60.53%), Postives = 86/114 (75.44%), Query Frame = 1 
Query:   13 ETERTVLEIAVEAAVVRATGVGEEARKELRLSMSREQMGCWQLEQMAKLMMQVMRLNTKLLRGLKECRARGGPPRIRRCRVKGQELVKLRMERAKLKRKVCQLEDEIEARGMPL 354
            E ERT LE+A EA VVR   VG + RKELR  MSR Q+GCWQ+EQ AKLMM++MRLN KL  GL++CRARGGPP +RR  +    L K+R+E A+L+R+V +LEDE E RG+PL
Sbjct:  208 EVERTELEVAAEATVVRGKSVGRQVRKELRQMMSRSQLGCWQVEQTAKLMMKIMRLNAKLAEGLRQCRARGGPPVLRRYNMNSPALAKVRLENARLRRRVRRLEDEAERRGLPL 321
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig150.3491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIP9_ECTSI1.150e-3160.53HSF_DOMAIN domain-containing protein n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig150contigF-serratus_M_contig150:298942..301221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1418
Cds size363
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig150.3491.1prot_F-serratus_M_contig150.3491.1Fucus serratus malepolypeptideF-serratus_M_contig150 298942..300167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929488.568788-CDS-F-serratus_M_contig150:298941..2990571622929488.568788-CDS-F-serratus_M_contig150:298941..299057Fucus serratus maleCDSF-serratus_M_contig150 298942..299057 +
1690962876.3839781-CDS-F-serratus_M_contig150:298941..2990571690962876.3839781-CDS-F-serratus_M_contig150:298941..299057Fucus serratus maleCDSF-serratus_M_contig150 298942..299057 +
1622929488.582645-CDS-F-serratus_M_contig150:299422..2995511622929488.582645-CDS-F-serratus_M_contig150:299422..299551Fucus serratus maleCDSF-serratus_M_contig150 299423..299551 +
1690962876.3994837-CDS-F-serratus_M_contig150:299422..2995511690962876.3994837-CDS-F-serratus_M_contig150:299422..299551Fucus serratus maleCDSF-serratus_M_contig150 299423..299551 +
1622929488.5939178-CDS-F-serratus_M_contig150:300049..3001671622929488.5939178-CDS-F-serratus_M_contig150:300049..300167Fucus serratus maleCDSF-serratus_M_contig150 300050..300167 +
1690962876.4086125-CDS-F-serratus_M_contig150:300049..3001671690962876.4086125-CDS-F-serratus_M_contig150:300049..300167Fucus serratus maleCDSF-serratus_M_contig150 300050..300167 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929488.6101565-UTR-F-serratus_M_contig150:300167..3012211622929488.6101565-UTR-F-serratus_M_contig150:300167..301221Fucus serratus maleUTRF-serratus_M_contig150 300168..301221 +
1690962876.4173741-UTR-F-serratus_M_contig150:300167..3012211690962876.4173741-UTR-F-serratus_M_contig150:300167..301221Fucus serratus maleUTRF-serratus_M_contig150 300168..301221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig150.3491.1

>prot_F-serratus_M_contig150.3491.1 ID=prot_F-serratus_M_contig150.3491.1|Name=mRNA_F-serratus_M_contig150.3491.1|organism=Fucus serratus male|type=polypeptide|length=121bp
EEEEETERTVLEIAVEAAVVRATGVGEEARKELRLSMSREQMGCWQLEQM
AKLMMQVMRLNTKLLRGLKECRARGGPPRIRRCRVKGQELVKLRMERAKL
KRKVCQLEDEIEARGMPLPP*
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mRNA from alignment at F-serratus_M_contig150:298942..301221+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig150.3491.1 ID=mRNA_F-serratus_M_contig150.3491.1|Name=mRNA_F-serratus_M_contig150.3491.1|organism=Fucus serratus male|type=mRNA|length=2280bp|location=Sequence derived from alignment at F-serratus_M_contig150:298942..301221+ (Fucus serratus male)
GAGGAAGAGGAGGAGACGGAGAGGACGGTGTTGGAGATTGCCGTGGAGGC
CGCGGTCGTGAGGGCCACGGGGGTCGGGGAGGAGGCGAGAAAAGAGCTGC
GGCTGTCGATGAGCAGGTGAGCGTGAGAGAAGGGAGGCCCACGACGACGT
TTTGTGGTGCTCGGTTGAGAGCGGCAGGGCTTGTCGAAAACCAGTAGCTC
TACGCGTGTCGCCTCTGTCCGGAGAACGAAAGTGTTTTTTTTCACGAATT
CGTTGTGTACGAGTACGTATTTGGAAGGCGTTTTTTTGCGTTTTTTTGTG
AGTAAAACCCGCGGGTGTCAGGTCTAACAACCCTTGTGTCCCGGGGCGAG
CGATGCCACCGCGAAGCACGGCTAACGGACCCGCTGTCAAGCCAACCGGA
CCCGGGTCGCCATCTTCTCCCTGCCGAGCGCTTTTTTCCATGTTTCCTCC
CCCGCGCCGTTATTTTCCCGTCCGAGCGCAGAGAGCAGATGGGGTGTTGG
CAGCTGGAGCAGATGGCGAAGCTCATGATGCAAGTGATGCGCCTCAATAC
CAAGCTGCTCAGGGGGCTGAAGGAGTGTCGGGCTAGGGGAGGACCACCTC
GAATTCGCCGGTGCGACACGTCGCCGTTTTCCGCTTCTTAGCGCCGTTGT
CATCACCTGAGCCCCTTTGTAGGGGGGGGGCGAGGCTGTCAAAGGGGGCG
CGTTTTTTTTTTTGTGCTTGGTTTGTGGGGTCCTCACAGCGAAAACGCCG
GGGTTACCACAGATACGACCCCCCCCCTCCCTCCCTCCTCTTAATGTATT
TTAATAGTCAACATGTTTTCGGTCGTATTTAATAGTCACAAGCCAATTGG
TACAATCGCGACTCGTGTTTCGCCCTTTCGGCACGGGTGACGCGTGCGAG
GCTAACATAATTCGAAACTCTTAAGCGTTGGACAACCGTAGACCCACGTA
CCACGCTGTAGGAGCTCCCATAACCACTTGTTTTTGATTAACTCTCATCA
TGTGACCGGCTCGAGCCCGTCGGAGGGCGCTCCCTTGACAATTTTATGAC
TTCATTGAGAAGGGGATGTTTGCCTTAAAGACCCCGGTAATTCGCACGCT
CGGCACAGGTGTCGGGTCAAGGGCCAAGAGCTCGTGAAGCTTCGCATGGA
GCGGGCAAAGTTAAAACGGAAGGTGTGCCAACTCGAGGACGAGATCGAGG
CTAGGGGAATGCCGCTCCCGCCCTAAAGGGGTTGATCGAGATAGGGCGTG
GGTAGGGGGGTGGTATGGGGTATTTCACATCAGAGTATGATCTCACAAAT
AGATGCCGCAAGAGGGGATGATGATTAGGAAGCTGTTTGTGTGTTGGTTG
TTCGTTGAGAATCAGGCGTGACTTTGACGACGTGGCTCGTTAACTTGTGC
AACTGCTGAAAAATGGTTGGAATGTACAGATATCGCAACTATCCAATTTC
AGAGATGTACCATTTCTTATCCCGGGGACACATAAAAACAAAATCCCCTC
TATCGTATCTCTTTTTGTCCCCACAGCGCCACAACAGACAGAACCGTCAT
GAAATAGTACGGCCGGATTTTGTCGAAACGTCTTGATTAAATAGAAGGAT
TGAATAATTGAGCGCTCCTTCATTGCGGCCCAACTTGTTGTGCAAGGGGA
CGACTGTATCATGCCCCCCCCTTGAGGCGTTTTTTCCGACCACGTTCGGT
GTAGTTCTGAAAGATTGGTCACGCTCCTCTTCTCCATTCGGGGGGGAACT
AACTACGACACCCGGCAACCCAACAATGACCATTCTCGATGTACGCGCCG
CATGCCGTTACTCTCGTGCGATGGTTGGTCCACCGTCCACTCCCGCGACG
GTAACAGCTTGAAGCGAGCGCGTAGCGACCCTGCCTCCTTTTTTTGGTCA
AAATACTTCAGTATTACGTTACGGACAGCACACACCATGGGCGCCGTAAC
CTTTTCTACACGGAGGGAACCAAGTGATGGATGGATGGGACTCCTTCCTC
TCCCATTGATATTACAGTATTATTACACTTGTCTATTGTCTATAATAGTC
TATATCCATGACGAAGTGAGATAGAAAATCGTAGGCGAGAAGTGACCACA
GGAAGGATGGCAATGATGAGGTTCATCGGGTACAAGTGAAAATTAATGGG
CGGTTATATTGGTCACCTATTAATAGTATAGTACATTGACGTCCATTGAC
CGTAAGTGAATGCCAGACTGTGTATCATATCATAGAGAAAAAAGAGGGCA
TGATATATATATATATTTCTTAGGAAGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig150:298942..301221+

>mRNA_F-serratus_M_contig150.3491.1 ID=mRNA_F-serratus_M_contig150.3491.1|Name=mRNA_F-serratus_M_contig150.3491.1|organism=Fucus serratus male|type=CDS|length=726bp|location=Sequence derived from alignment at F-serratus_M_contig150:298942..301221+ (Fucus serratus male)
GAGGAAGAGGAGGAGACGGAGAGGACGGTGTTGGAGATTGCCGTGGAGGC
CGCGGTCGTGAGGGCCACGGGGGTCGGGGAGGAGGCGAGAAAAGAGCTGC
GGCTGTCGATGAGCAGGAGGAAGAGGAGGAGACGGAGAGGACGGTGTTGG
AGATTGCCGTGGAGGCCGCGGTCGTGAGGGCCACGGGGGTCGGGGAGGAG
GCGAGAAAAGAGCTGCGGCTGTCGATGAGCAGAGAGCAGATGGGGTGTTG
GCAGCTGGAGCAGATGGCGAAGCTCATGATGCAAGTGATGCGCCTCAATA
CCAAGCTGCTCAGGGGGCTGAAGGAGTGTCGGGCTAGGGGAGGACCACCT
CGAATTCGCCGAGAGCAGATGGGGTGTTGGCAGCTGGAGCAGATGGCGAA
GCTCATGATGCAAGTGATGCGCCTCAATACCAAGCTGCTCAGGGGGCTGA
AGGAGTGTCGGGCTAGGGGAGGACCACCTCGAATTCGCCGGTGTCGGGTC
AAGGGCCAAGAGCTCGTGAAGCTTCGCATGGAGCGGGCAAAGTTAAAACG
GAAGGTGTGCCAACTCGAGGACGAGATCGAGGCTAGGGGAATGCCGCTCC
CGCCCTAAGTGTCGGGTCAAGGGCCAAGAGCTCGTGAAGCTTCGCATGGA
GCGGGCAAAGTTAAAACGGAAGGTGTGCCAACTCGAGGACGAGATCGAGG
CTAGGGGAATGCCGCTCCCGCCCTAA
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