mRNA_F-serratus_M_contig150.3490.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig150.3490.1
Unique NamemRNA_F-serratus_M_contig150.3490.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig150.3490.1 vs. uniprot
Match: D7FIP9_ECTSI (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP9_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.250e-28
Identity = 63/111 (56.76%), Postives = 83/111 (74.77%), Query Frame = 1 
Query: 1033 PKKFMSILHAMLIAGDSQIRWERQTGSVVIDDPARFEAKTMPRYFPDPKLSTFYRQLCAYGFRKE-KNAKQQGRFVQPEYRYKDVSCIKDILAKN-----KPESAIRNTAA 1347
            P KF+SIL+ ML+ G+ Q+ WER+TGSVVI+DP  FEA+TMPR+F DPK+S F RQL  YGF+K  ++ K+QGR+  PE R+KDVSC+K +L K      + E AIRNT+A
Sbjct:   67 PTKFLSILYDMLVEGNPQVWWERETGSVVIEDPQLFEAETMPRFFTDPKVSGFLRQLAFYGFKKPGRSVKEQGRYQHPECRWKDVSCVKSLLTKKAYDLRRLEKAIRNTSA 177
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig150.3490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIP9_ECTSI1.250e-2856.76HSF_DOMAIN domain-containing protein n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig150contigF-serratus_M_contig150:294908..298935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1467
Cds size1467
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig150.3490.1prot_F-serratus_M_contig150.3490.1Fucus serratus malepolypeptideF-serratus_M_contig150 294908..298935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929485.3988369-CDS-F-serratus_M_contig150:294907..2954371622929485.3988369-CDS-F-serratus_M_contig150:294907..295437Fucus serratus maleCDSF-serratus_M_contig150 294908..295437 +
1690962874.8833098-CDS-F-serratus_M_contig150:294907..2954371690962874.8833098-CDS-F-serratus_M_contig150:294907..295437Fucus serratus maleCDSF-serratus_M_contig150 294908..295437 +
1622929485.416955-CDS-F-serratus_M_contig150:295812..2963901622929485.416955-CDS-F-serratus_M_contig150:295812..296390Fucus serratus maleCDSF-serratus_M_contig150 295813..296390 +
1690962874.8937726-CDS-F-serratus_M_contig150:295812..2963901690962874.8937726-CDS-F-serratus_M_contig150:295812..296390Fucus serratus maleCDSF-serratus_M_contig150 295813..296390 +
1622929485.4307148-CDS-F-serratus_M_contig150:296719..2967601622929485.4307148-CDS-F-serratus_M_contig150:296719..296760Fucus serratus maleCDSF-serratus_M_contig150 296720..296760 +
1690962874.9027712-CDS-F-serratus_M_contig150:296719..2967601690962874.9027712-CDS-F-serratus_M_contig150:296719..296760Fucus serratus maleCDSF-serratus_M_contig150 296720..296760 +
1622929485.4482012-CDS-F-serratus_M_contig150:298021..2980961622929485.4482012-CDS-F-serratus_M_contig150:298021..298096Fucus serratus maleCDSF-serratus_M_contig150 298022..298096 +
1690962874.9116547-CDS-F-serratus_M_contig150:298021..2980961690962874.9116547-CDS-F-serratus_M_contig150:298021..298096Fucus serratus maleCDSF-serratus_M_contig150 298022..298096 +
1622929485.4675548-CDS-F-serratus_M_contig150:298692..2989351622929485.4675548-CDS-F-serratus_M_contig150:298692..298935Fucus serratus maleCDSF-serratus_M_contig150 298693..298935 +
1690962874.9271703-CDS-F-serratus_M_contig150:298692..2989351690962874.9271703-CDS-F-serratus_M_contig150:298692..298935Fucus serratus maleCDSF-serratus_M_contig150 298693..298935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig150.3490.1

>prot_F-serratus_M_contig150.3490.1 ID=prot_F-serratus_M_contig150.3490.1|Name=mRNA_F-serratus_M_contig150.3490.1|organism=Fucus serratus male|type=polypeptide|length=489bp
MQQQQQQWAVDKFTKTLAKSVTGAGDPWQGCVGGAQMPRPTNVANIPNCW
PGQDGVQPGFQQALTPGTGSAQGAAGSKRGEGNGQGFEGGGGGSSSHDGA
NNRAQQPVSGSSEACSTWGVEKIGGRSGSTSASTATVTTEVVTTAAAATV
ASLAVASDQGLSAGQRSRDWDALRTTIPLVQSALKRQSELEAANARAPAG
HPPTTKRQVTIAPATSKPVELTPQVTIAPATSKPAELPPQVTIAPATSKP
VELPPQVTIAPATSKPDELPPPSENVIALSCRGPGAVAGSSTARGSSTGL
AASSGPVACAIGAKGGGGGGGVSARGGAGGVGGPGSGGIVRKVPPKKFMS
ILHAMLIAGDSQIRWERQTGSVVIDDPARFEAKTMPRYFPDPKLSTFYRQ
LCAYGFRKEKNAKQQGRFVQPEYRYKDVSCIKDILAKNKPESAIRNTAAS
QENGSARPPTCVAGGSDGGAAGCVGAKRKGGTKRTVQGG
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mRNA from alignment at F-serratus_M_contig150:294908..298935+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig150.3490.1 ID=mRNA_F-serratus_M_contig150.3490.1|Name=mRNA_F-serratus_M_contig150.3490.1|organism=Fucus serratus male|type=mRNA|length=4028bp|location=Sequence derived from alignment at F-serratus_M_contig150:294908..298935+ (Fucus serratus male)
ATGCAGCAGCAGCAACAACAGTGGGCCGTTGATAAGTTTACCAAGACGCT
GGCGAAATCCGTAACGGGAGCTGGGGACCCTTGGCAGGGATGCGTCGGCG
GCGCTCAGATGCCCCGACCCACGAACGTAGCCAACATACCCAATTGTTGG
CCGGGCCAAGACGGCGTCCAGCCGGGGTTTCAGCAGGCATTGACTCCCGG
CACCGGCAGCGCGCAGGGAGCAGCAGGAAGCAAAAGAGGGGAAGGAAATG
GTCAGGGATTTGAAGGGGGCGGGGGCGGCAGCAGCAGTCACGATGGCGCC
AATAACCGAGCGCAGCAGCCCGTTAGTGGGTCGTCTGAAGCGTGTTCCAC
GTGGGGAGTTGAGAAGATTGGAGGGCGTTCGGGGTCGACATCGGCTTCAA
CGGCAACAGTAACAACAGAGGTCGTGACAACAGCAGCAGCAGCAACAGTA
GCCTCGTTGGCTGTCGCAAGCGATCAGGGCCTGAGTGCGGGGCAGCGCTC
GCGTGACTGGGACGCGCTCCGTACAACCATGTCAGTGCCAACTGCCGGTT
CGCAGGCTCTTCATTTGGTGGACGCTGTGGAGATGTATTGCCGAGTAGTA
GGAGTAAAGGTGTAGCAGCTACAGCCGCGAGACGTAACATCATCGGGAAA
GTTTTGCTTAGCGTCGGTCCTTGGTCCTTGGAGCATAATTTGTCATATGA
TTGTAATATGAAGTCAGGCTATTCCTGTCGTCCATCCACCGCTATGCATG
TGTGTGTGTGTGAGAGAGAGAGAGAGTTTCTGGTTGTCCCCCCTTTGTTC
GCCAGCATCGTAACGCCTCCCGCCTGTCCCAATTGCGACCGTCTGCTGCT
CACCGTAACCCCCCCCCCCCCCCCTTCTACAACCGTTCCACACTCTGTTT
TTAAGTCCTCTTGTCCAATCAGCCTTGAAGAGGCAAAGTGAGCTGGAAGC
CGCGAACGCCCGAGCACCCGCAGGGCATCCACCGACGACGAAGAGACAAG
TGACGATCGCTCCGGCCACCTCCAAACCCGTCGAGCTAACACCTCAAGTG
ACAATCGCTCCAGCCACCTCTAAACCCGCCGAGCTGCCACCTCAAGTGAC
AATCGCTCCAGCCACCTCTAAACCCGTCGAGCTGCCACCTCAAGTGACGA
TCGCTCCGGCCACCTCTAAACCCGACGAGCTGCCACCGCCTTCGGAAAAC
GTGATCGCTCTTTCATGTCGAGGCCCTGGCGCCGTTGCAGGCAGCAGCAC
GGCGCGCGGTAGCAGCACGGGGTTGGCCGCATCTAGCGGGCCGGTTGCCT
GTGCCATCGGGGCTAAAGGCGGCGGAGGGGGAGGGGGAGTTTCGGCAAGA
GGTGGGGCTGGAGGCGTCGGCGGGCCGGGATCGGGGGGCATAGTTAGAAA
AGTGCCGCCGAAGAAATTCATGTCGATCCTGCACGCCATGCTTATCGCCG
GCGACTCCCAGATTCGGTGGGAGCGGCAGACAGGTGTGCGCACCCCCGCC
AGGCGGCACCCACGCGAAACGGTGTTGATTCGCCGTTTTTTGAGATAAAA
CCCCAACTATTGTTACATGTTGCTGATGGCGCCGGCCTTGTCTGAGGCGT
TTTTCATAAACGGTAGCTTCCTCGAGCGTGAAGAGCGATATAATTGCCGC
CGCGCTTCCGTTCTTAACGGATTCTGCCGTAAAAGAGACATTCTCAAAAC
AAATCCCACCCTACTGAGAACAAAAACCTGTCCATCCTTGCTTCCGTTGG
CGTGTGCCGTTTCCTCGCATTCACGGCCGCTCATTCGTCGTGGCGACGCC
GTGCCTTCGCAGGTAGCGTGGTAATCGACGACCCTGCGCGCTTCGAGGCC
AAGGTGAGTTGTTGCGTCCTCGGAAGGTTTTCTGCTTAGTTAGGAGGCGG
TTTCGGGCGAGCAGAGTTGTGCGAGCGGTTCGCTCTCGAGCTAGACTGGG
TTTCAAAAGGGCCATGGTGCTGGCTGTCTTGTCTGTGTCGAAGCACAACC
GGACAACAACCCTCCTTAGCCTCCGCGAAACGCCGCCAGTGATGTCCCAG
GGCTACGAGTCAAAATTGTTTTTTTAGTAGATGCCTCCTATCCATGCAGG
GCAACTAGCCGGATATAGTCACAAGAGCGCACTCACGGGCGTCGGTCGAT
CAGTCGGTCGGTCGCTGGCGAGCGAACGTCCGAGCTCGCGGATCGCGATG
GGCCTTTTGGACCGTGCCCCCGTAAACCGAAGATCCAACCACCTCGCAAG
GGGTCGAGATGTGGACGTCGTACTAGGGGCTTTCCGTCTCATCTTGGCCG
TTGTCGTGTACAGCCACCTTCTCTGTGCCCTCGTTTTTTAGAGCGCGCGT
CGTTTCTTGAGACGCTTTTTTTTTCTCAAAAGGAAAGACGAGATCCGCGC
GAAAGCCTTCGTGAGCCCTCTGTGTCAGCCTGACCCTTTTGAGTAGGGGC
TCAAATGCCCCCACGTGTTCGCATGCAGGTCTTTTTATTTTGCTATCTTG
TGTTCGAGCCCCTGTTGAAGAGACGATTTTGTTGTTTTTTCGCGTTGCGT
ACGTGAGCAGCGAACGAGTCGGAGTTTTGGTATTGCTTGAGTGCGTTTTA
AGGGAGGGGTGGTTGTTGCGAAACCCGTCACATAGGCGACCGTCGTTTCG
TGGTGCGCGTGTGAAGATTCGAATTCTCACGCTGGCGCTTCGCCAGAAAA
ACGAACCACGTGTTGCCGAGTTCGGTGCTGACGTCACGGGGAAAAATAGA
CTCCTGGTACGGGAAGTGGTCTCCGATGCCCTCTACCTGATGTTTTGCGT
AAGCGCCGGGGGGGGGGGGGGTGTCAACAAGATGTGACCCTGTATCCTTA
GCTCACCTGATCGTCCTCCTTTTTTGAGACACACCACGAACGCGATTGGC
ATTTATTTGATCGTGAATGCTTTGTGTTCCCCGTATCGCTAGTCTTTCTC
AAGTCAGTTGCAAAGTCAACACGCTTAACGTGACACAAGTGGAGAGCTCT
CTCCTCTAAAATCGAAGGACGAGTGACGATGCTGTACCAAAAACTCGACT
CCGGGTGCACGAAGAACTCATGGGACAGCCCGCTTCCCTTGTGCTCCGAT
TGTTGTGGGTACAGACGATGCCCCGTTACTTCCCGGACCCGAAGCTCTCC
ACCTTCTATCGACAGTTGTGCGCCTACGGCTTTAGAAAGGTATGCAGAGA
CACGGCGAACAAACAACGCAGGCGTCGTCATGTGGAGGGATGCGTGTCTG
TGCTTGAAATCAACCGAGGGAAGGGCAGTATTGTCGCTTCGCTTTTCGTG
GCCGGTCGGCGGGAGGGTGGAGGCGTCGTTTGCCGCTCTAATTGCCCCGA
ACGTTTTTGTTTTTGCTGCTGGGGAAATAATTTTGTGTGTGTGTGTGGGG
GGGGGCGTTGTGATGTTTTGGATGCTCCGATGACCACGGACGCAAAGGCT
CCCTCGCTGATCTATTGAGGTTTTCCGATGTAGTCAGAGACTCGTCGTGT
TTTGTTCGTTGTCCATGTAGAAAATGCGACGTATACTCAATAGTATGTAG
GCCTGGATTCGATTTTTTTCGAGCACGCTAACGTCCTTTCTCCCCTCAAC
AACGCAAGACGTCAAAATCCTTGCCAACGTTATACCAAGAGGACGAGAGC
GTGCTCATCCCCAAGTACTCACAATACTATTGGCCGAGATGTTTCGCTGC
CCTCTTCTCCTTGTCCTCACTCCTCCCCCTTTTGCTGGTGGAACGATTAC
GCCGGTCTGATGCACCTCTCACACCACACCATCAGGAGAAGAACGCGAAG
CAACAAGGCCGATTCGTGCAGCCAGAGTATCGATACAAGGACGTGTCCTG
CATCAAGGATATCCTGGCGAAGAACAAGCCTGAGAGCGCCATTCGCAACA
CCGCCGCCTCACAGGAAAACGGGTCTGCCAGACCCCCGACCTGCGTCGCG
GGAGGCAGTGACGGGGGCGCGGCGGGCTGCGTTGGCGCCAAGCGAAAAGG
AGGAACCAAACGCACCGTACAAGGGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig150:294908..298935+

>mRNA_F-serratus_M_contig150.3490.1 ID=mRNA_F-serratus_M_contig150.3490.1|Name=mRNA_F-serratus_M_contig150.3490.1|organism=Fucus serratus male|type=CDS|length=2934bp|location=Sequence derived from alignment at F-serratus_M_contig150:294908..298935+ (Fucus serratus male)
ATGCAGCAGCAGCAACAACAGTGGGCCGTTGATAAGTTTACCAAGACGCT
GGCGAAATCCGTAACGGGAGCTGGGGACCCTTGGCAGGGATGCGTCGGCG
GCGCTCAGATGCCCCGACCCACGAACGTAGCCAACATACCCAATTGTTGG
CCGGGCCAAGACGGCGTCCAGCCGGGGTTTCAGCAGGCATTGACTCCCGG
CACCGGCAGCGCGCAGGGAGCAGCAGGAAGCAAAAGAGGGGAAGGAAATG
GTCAGGGATTTGAAGGGGGCGGGGGCGGCAGCAGCAGTCACGATGGCGCC
AATAACCGAGCGCAGCAGCCCGTTAGTGGGTCGTCTGAAGCGTGTTCCAC
GTGGGGAGTTGAGAAGATTGGAGGGCGTTCGGGGTCGACATCGGCTTCAA
CGGCAACAGTAACAACAGAGGTCGTGACAACAGCAGCAGCAGCAACAGTA
GCCTCGTTGGCTGTCGCAAGCGATCAGGGCCTGAGTGCGGGGCAGCGCTC
GCGTGACTGGGACGCGCTCCGTACAACCATATGCAGCAGCAGCAACAACA
GTGGGCCGTTGATAAGTTTACCAAGACGCTGGCGAAATCCGTAACGGGAG
CTGGGGACCCTTGGCAGGGATGCGTCGGCGGCGCTCAGATGCCCCGACCC
ACGAACGTAGCCAACATACCCAATTGTTGGCCGGGCCAAGACGGCGTCCA
GCCGGGGTTTCAGCAGGCATTGACTCCCGGCACCGGCAGCGCGCAGGGAG
CAGCAGGAAGCAAAAGAGGGGAAGGAAATGGTCAGGGATTTGAAGGGGGC
GGGGGCGGCAGCAGCAGTCACGATGGCGCCAATAACCGAGCGCAGCAGCC
CGTTAGTGGGTCGTCTGAAGCGTGTTCCACGTGGGGAGTTGAGAAGATTG
GAGGGCGTTCGGGGTCGACATCGGCTTCAACGGCAACAGTAACAACAGAG
GTCGTGACAACAGCAGCAGCAGCAACAGTAGCCTCGTTGGCTGTCGCAAG
CGATCAGGGCCTGAGTGCGGGGCAGCGCTCGCGTGACTGGGACGCGCTCC
GTACAACCATTCCTCTTGTCCAATCAGCCTTGAAGAGGCAAAGTGAGCTG
GAAGCCGCGAACGCCCGAGCACCCGCAGGGCATCCACCGACGACGAAGAG
ACAAGTGACGATCGCTCCGGCCACCTCCAAACCCGTCGAGCTAACACCTC
AAGTGACAATCGCTCCAGCCACCTCTAAACCCGCCGAGCTGCCACCTCAA
GTGACAATCGCTCCAGCCACCTCTAAACCCGTCGAGCTGCCACCTCAAGT
GACGATCGCTCCGGCCACCTCTAAACCCGACGAGCTGCCACCGCCTTCGG
AAAACGTGATCGCTCTTTCATGTCGAGGCCCTGGCGCCGTTGCAGGCAGC
AGCACGGCGCGCGGTAGCAGCACGGGGTTGGCCGCATCTAGCGGGCCGGT
TGCCTGTGCCATCGGGGCTAAAGGCGGCGGAGGGGGAGGGGGAGTTTCGG
CAAGAGGTGGGGCTGGAGGCGTCGGCGGGCCGGGATCGGGGGGCATAGTT
AGAAAAGTGCCGCCGAAGAAATTCATGTCGATCCTGCACGCCATGCTTAT
CGCCGGCGACTCCCAGATTCGGTGGGAGCGGCAGACAGTCCTCTTGTCCA
ATCAGCCTTGAAGAGGCAAAGTGAGCTGGAAGCCGCGAACGCCCGAGCAC
CCGCAGGGCATCCACCGACGACGAAGAGACAAGTGACGATCGCTCCGGCC
ACCTCCAAACCCGTCGAGCTAACACCTCAAGTGACAATCGCTCCAGCCAC
CTCTAAACCCGCCGAGCTGCCACCTCAAGTGACAATCGCTCCAGCCACCT
CTAAACCCGTCGAGCTGCCACCTCAAGTGACGATCGCTCCGGCCACCTCT
AAACCCGACGAGCTGCCACCGCCTTCGGAAAACGTGATCGCTCTTTCATG
TCGAGGCCCTGGCGCCGTTGCAGGCAGCAGCACGGCGCGCGGTAGCAGCA
CGGGGTTGGCCGCATCTAGCGGGCCGGTTGCCTGTGCCATCGGGGCTAAA
GGCGGCGGAGGGGGAGGGGGAGTTTCGGCAAGAGGTGGGGCTGGAGGCGT
CGGCGGGCCGGGATCGGGGGGCATAGTTAGAAAAGTGCCGCCGAAGAAAT
TCATGTCGATCCTGCACGCCATGCTTATCGCCGGCGACTCCCAGATTCGG
TGGGAGCGGCAGACAGGTAGCGTGGTAATCGACGACCCTGCGCGCTTCGA
GGCCAAGGTAGCGTGGTAATCGACGACCCTGCGCGCTTCGAGGCCAAGAC
GATGCCCCGTTACTTCCCGGACCCGAAGCTCTCCACCTTCTATCGACAGT
TGTGCGCCTACGGCTTTAGAAAGACGATGCCCCGTTACTTCCCGGACCCG
AAGCTCTCCACCTTCTATCGACAGTTGTGCGCCTACGGCTTTAGAAAGGA
GAAGAACGCGAAGCAACAAGGCCGATTCGTGCAGCCAGAGTATCGATACA
AGGACGTGTCCTGCATCAAGGATATCCTGGCGAAGAACAAGCCTGAGAGC
GCCATTCGCAACACCGCCGCCTCACAGGAAAACGGGTCTGCCAGACCCCC
GACCTGCGTCGCGGGAGGCAGTGACGGGGGCGCGGCGGGCTGCGTTGGCG
CCAAGCGAAAAGGAGGAACCAAACGCACCGTACAAGGGGGGGAGAAGAAC
GCGAAGCAACAAGGCCGATTCGTGCAGCCAGAGTATCGATACAAGGACGT
GTCCTGCATCAAGGATATCCTGGCGAAGAACAAGCCTGAGAGCGCCATTC
GCAACACCGCCGCCTCACAGGAAAACGGGTCTGCCAGACCCCCGACCTGC
GTCGCGGGAGGCAGTGACGGGGGCGCGGCGGGCTGCGTTGGCGCCAAGCG
AAAAGGAGGAACCAAACGCACCGTACAAGGGGGG
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