mRNA_F-serratus_M_contig150.3484.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig150.3484.1
Unique NamemRNA_F-serratus_M_contig150.3484.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig150.3484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig150contigF-serratus_M_contig150:219257..219874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size358
Cds size222
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig150.3484.1prot_F-serratus_M_contig150.3484.1Fucus serratus malepolypeptideF-serratus_M_contig150 219391..219874 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929487.4666102-UTR-F-serratus_M_contig150:219256..2193901622929487.4666102-UTR-F-serratus_M_contig150:219256..219390Fucus serratus maleUTRF-serratus_M_contig150 219257..219390 +
1690962875.8327987-UTR-F-serratus_M_contig150:219256..2193901690962875.8327987-UTR-F-serratus_M_contig150:219256..219390Fucus serratus maleUTRF-serratus_M_contig150 219257..219390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929487.4789956-CDS-F-serratus_M_contig150:219390..2195561622929487.4789956-CDS-F-serratus_M_contig150:219390..219556Fucus serratus maleCDSF-serratus_M_contig150 219391..219556 +
1690962875.842102-CDS-F-serratus_M_contig150:219390..2195561690962875.842102-CDS-F-serratus_M_contig150:219390..219556Fucus serratus maleCDSF-serratus_M_contig150 219391..219556 +
1622929487.4902282-CDS-F-serratus_M_contig150:219818..2198741622929487.4902282-CDS-F-serratus_M_contig150:219818..219874Fucus serratus maleCDSF-serratus_M_contig150 219819..219874 +
1690962875.8511522-CDS-F-serratus_M_contig150:219818..2198741690962875.8511522-CDS-F-serratus_M_contig150:219818..219874Fucus serratus maleCDSF-serratus_M_contig150 219819..219874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig150.3484.1

>prot_F-serratus_M_contig150.3484.1 ID=prot_F-serratus_M_contig150.3484.1|Name=mRNA_F-serratus_M_contig150.3484.1|organism=Fucus serratus male|type=polypeptide|length=74bp
MDLVVVAMMLSTAPAATAWSSSPDNPDAPFIKAGIAPECPADLFDAKLVT
ASCYQDWDRHGRWFMRLRSSGIPA
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mRNA from alignment at F-serratus_M_contig150:219257..219874+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig150.3484.1 ID=mRNA_F-serratus_M_contig150.3484.1|Name=mRNA_F-serratus_M_contig150.3484.1|organism=Fucus serratus male|type=mRNA|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig150:219257..219874+ (Fucus serratus male)
CCTCTCTACCCTTGATCCAGATGTCCAATCTGACTTTGCTACTCATATAG
TAAGTGCCTGATCAATCGACTGACCTCGAGCTACGCCAAAGTATTTGCGT
CGACCTTCGACAATAAAGAGCACTGAGCAAAAGAATGGACCTCGTGGTCG
TGGCGATGATGTTGTCAACGGCACCTGCGGCCACGGCTTGGTCCTCGTCC
CCTGACAACCCCGATGCCCCTTTCATCAAGGCTGGCATAGCGCCTGAGTG
CCCCGCTGACCTCTTTGACGCAAAGCTTGTGACAGCTAGCTGCTACCAAG
GCGAGATCCTGGGCTGGACAACATGACTTCGGCTCCTCTGGGGAATGGAG
TTCTGTCACGCAGTAATCCGGTCGGCGTACATAATTAGCGTCGCGTCCGG
TTCAGCTGTAGGTACATGTTTCACGGTTTTCTTTTTCGGTTTCCAACTCC
TCTGTATCACGATGCATATACTTTTCCTTCACAAAAATGAACCGTTCTCC
TCCATGACGAGAGGTTTTATAATGTGGTGTTCATCCTACTCGTTCAACAT
CATTCGGGTCAGATTGGGACCGCCACGGACGGTGGTTTATGCGCCTTCGC
TCCTCCGGGATACCTGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig150:219257..219874+

>mRNA_F-serratus_M_contig150.3484.1 ID=mRNA_F-serratus_M_contig150.3484.1|Name=mRNA_F-serratus_M_contig150.3484.1|organism=Fucus serratus male|type=CDS|length=444bp|location=Sequence derived from alignment at F-serratus_M_contig150:219257..219874+ (Fucus serratus male)
ATGGACCTCGTGGTCGTGGCGATGATGTTGTCAACGGCACCTGCGGCCAC
GGCTTGGTCCTCGTCCCCTGACAACCCCGATGCCCCTTTCATCAAGGCTG
GCATAGCGCCTGAGTGCCCCGCTGACCTCTTTGACGCAAAGCTTGTGACA
GCTAGCTGCTACCAAGATGGACCTCGTGGTCGTGGCGATGATGTTGTCAA
CGGCACCTGCGGCCACGGCTTGGTCCTCGTCCCCTGACAACCCCGATGCC
CCTTTCATCAAGGCTGGCATAGCGCCTGAGTGCCCCGCTGACCTCTTTGA
CGCAAAGCTTGTGACAGCTAGCTGCTACCAAGATTGGGACCGCCACGGAC
GGTGGTTTATGCGCCTTCGCTCCTCCGGGATACCTGCGATTGGGACCGCC
ACGGACGGTGGTTTATGCGCCTTCGCTCCTCCGGGATACCTGCG
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