mRNA_F-serratus_M_contig150.3483.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig150.3483.1 vs. uniprot
Match: D7FIP5_ECTSI (Uncharacterized protein ycf23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP5_ECTSI) HSP 1 Score: 446 bits (1147), Expect = 2.080e-150 Identity = 241/276 (87.32%), Postives = 257/276 (93.12%), Query Frame = 2
Query: 122 MKSTYFIFATAALSGAESFCFAPTRMSGDVLAPFHAGKALKVISGLNKFDADLVSKVARATAAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDSFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLNEQVRLAEELEVLGVDVIQTEGKYSLDPSTGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPAPKAVKAPTSS 949
M+ST I A AALS A++FCF+P RMSGDVLAPF AGKALKVISGLNKFDADLVSKVARA AAGGGTHIDIACDP+LVR AKAVSNVPVCVSAV+PELFPACV AGAEMVELGNFD FYDQGLTF+AEDVLEMTRKTRALLP+ PLSVTVPHTLDL++QV LA ELE LGVDVIQTEGK+SLDPS GG+QGAIERAAPTLAAAHAIS+AV+IPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLP P AV+AP S+
Sbjct: 1 MRSTCVIAAAAALSCADAFCFSPARMSGDVLAPFQAGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPDLVRAAKAVSNVPVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGLTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPKPSAVEAPVSA 276
BLAST of mRNA_F-serratus_M_contig150.3483.1 vs. uniprot
Match: A0A835YK10_9STRA (Uncharacterized protein ycf23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK10_9STRA) HSP 1 Score: 322 bits (824), Expect = 6.030e-102 Identity = 173/258 (67.05%), Postives = 209/258 (81.01%), Query Frame = 2
Query: 152 AALSGAESFCFAPTRMSGDVLAPFHAGKALKVISGLNKFDADLVSKVARATAAGGGTHIDIACDPELVRVAKAVS-NVPVCVSAVEPELFPACVAAGAEMVELGNFDSFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLNEQVRLAEELEVLGVDVIQTEGKYSLDPSTGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPAP 922
A+L G E F MSGD +APF A KALK+ISG+ FD++LV KVA A AGG TH+DIA DPELV++AK + +V +CVSA+EPEL CV AGA+MVELGNFD FYDQG+ FTA+DV+ MT+ TRALLP PLSVT+PH L +++QV LA+ L+ LGVDVIQTEGKYSLDPS GG+QG IERAAP LAA +AI+RAV+IPVM +SG+S+VTA MALAAGA GVGVGSAVNKLN+++ M+AVVRA+A AM LPAP
Sbjct: 12 ASLCGVEGFM----TMSGDAIAPFRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAMDLPAP 265
BLAST of mRNA_F-serratus_M_contig150.3483.1 vs. uniprot
Match: A0A1Y1HWD8_KLENI (Uncharacterized protein ycf23 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWD8_KLENI) HSP 1 Score: 286 bits (732), Expect = 9.500e-88 Identity = 156/243 (64.20%), Postives = 192/243 (79.01%), Query Frame = 2
Query: 185 APTRMSGDVLAPFHAGKALKVISGLNKFDADLVSKVARATAAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDSFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLNEQVRLAEELEVLGVDVIQTEGKYSLDPSTGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGL 913
AP+R DVL PF KA KVI+GL F+ + V+++ A GG TH+DIACDPELV++A ++++VPVCVSAVEPELF VAAGA MVE+GN+D FY +G TF AE+VL +TR+TR LLP++PLSVTVPHTL L +QV LAE LE G D+IQTEG S P+ GV G IE+A+PTLAAA++ISRAV+IPVM ASG+SDVTA MA+AAGA GVGVGSA+NKLNS I M+A RAIA+A+GL
Sbjct: 62 APSRQ--DVLRPFAEKKAFKVIAGLKNFNRENVAEIVAAAEQGGATHVDIACDPELVKLACSLTSVPVCVSAVEPELFVPAVAAGATMVEIGNYDPFYAEGRTFDAEEVLALTRRTRQLLPTIPLSVTVPHTLPLPDQVHLAELLENAGADIIQTEGGVSSAPTQAGVAGMIEKASPTLAAAYSISRAVSIPVMCASGISDVTASMAIAAGAAGVGVGSAINKLNSGIAMIAATRAIANALGL 302
BLAST of mRNA_F-serratus_M_contig150.3483.1 vs. uniprot
Match: U5DGR7_9CHRO (Pyruvate/oxaloacetate carboxyltransferase n=1 Tax=Rubidibacter lacunae KORDI 51-2 TaxID=582515 RepID=U5DGR7_9CHRO) HSP 1 Score: 274 bits (700), Expect = 5.890e-84 Identity = 148/231 (64.07%), Postives = 181/231 (78.35%), Query Frame = 2
Query: 215 APFHAGKALKVISGLNKFDADLVSKVARATAAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDSFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLNEQVRLAEELEVLGVDVIQTEGKYSLDPSTGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAM 907
A F ALK+ISGLN F+ D V+ VARA AAGG T +DIA PELVR A+ ++P+C SAVEPE F A VAAGA+++E+GNFD FY QG F AE+VL +TR TRALLP V LSVTVPH L L+ QV+LAE+L G DVIQTEG S P+ GGV GAIE+AAPTLAAAH ISRAV++PV+ ASGL+DVTAP+A+AAGA G+GVGSAVN+LNS++ MVA VR++ +A+
Sbjct: 8 AAFARRNALKIISGLNNFNGDRVAAVARAAAAGGATFVDIAASPELVRRARQACDLPICTSAVEPEAFVAAVAAGADLIEIGNFDCFYAQGRRFEAEEVLALTRATRALLPQVMLSVTVPHVLPLDAQVQLAEDLVRAGADVIQTEGGTSSQPAHGGVLGAIEKAAPTLAAAHCISRAVDVPVLCASGLTDVTAPLAIAAGAAGIGVGSAVNRLNSKVAMVAAVRSLVAAL 238
BLAST of mRNA_F-serratus_M_contig150.3483.1 vs. uniprot
Match: M1AF41_SOLTU (Uncharacterized protein ycf23 n=16 Tax=Solanaceae TaxID=4070 RepID=M1AF41_SOLTU) HSP 1 Score: 275 bits (704), Expect = 9.830e-84 Identity = 144/235 (61.28%), Postives = 186/235 (79.15%), Query Frame = 2
Query: 209 VLAPFHAGKALKVISGLNKFDADLVSKVARATAAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDSFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLNEQVRLAEELEVLGVDVIQTEGKYSLDPSTGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGL 913
VL FH KALK+I+GL D + V+ V A GG TH+DIACDPELV++A +++++PVCVS+V+P FPA V AGA MVE+GN+DSFY++GL F+ E +L +T++T+ LLPSV LSVTVPHTL L +QV+LAE+LE+ GVD+IQTEG PS GV G IE+A PTLAAA++ISRAVNIPVM +SGLS VTAPMA+ AGA GVGVGSA+NKLN ++ M+A V++IA ++GL
Sbjct: 56 VLKEFHEKKALKIIAGLQNLDKENVASVVTAADKGGATHVDIACDPELVKLAISLTSLPVCVSSVDPAAFPAAVEAGALMVEIGNYDSFYEKGLVFSPEQILNLTKETKRLLPSVVLSVTVPHTLSLPDQVKLAEQLELEGVDIIQTEGGKCSTPSKAGVLGLIEKATPTLAAAYSISRAVNIPVMCSSGLSAVTAPMAIVAGAAGVGVGSAINKLNDQVAMIAEVKSIAHSLGL 290
BLAST of mRNA_F-serratus_M_contig150.3483.1 vs. uniprot
Match: A0A166CRX2_DAUCS (Uncharacterized protein ycf23 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166CRX2_DAUCS) HSP 1 Score: 275 bits (703), Expect = 1.570e-83 Identity = 144/234 (61.54%), Postives = 189/234 (80.77%), Query Frame = 2
Query: 209 VLAPFHAGKALKVISGLNKFDADLVSKVARATAAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDSFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLNEQVRLAEELEVLGVDVIQTEG-KYSLDPSTGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAM 907
VL FHA KA+K+ISGL FD D V+ V A GG TH+DIACDP+LV++A +++++P+CVS+V+P FPA + AGA MVE+GN+DSFY++G+TF+ E++L +TR+T+ +LPSV LSVTVPHTL L +Q++LAE+LE GVDVIQTEG KYS P+ G+ G IE+A PTLAAA++ISRAV IPVM +SGLS VTAPMA+ AGA GVGVGSA+NKLN I M+A VR+IA+++
Sbjct: 60 VLKDFHAKKAIKIISGLQNFDKDNVASVVTAADKGGATHVDIACDPDLVKLATSLTSLPICVSSVDPAAFPAAIEAGAVMVEIGNYDSFYEKGVTFSPEEILNLTRETKKILPSVALSVTVPHTLSLPDQIKLAEQLEQEGVDVIQTEGGKYS-SPTKSGILGLIEKATPTLAAAYSISRAVKIPVMCSSGLSAVTAPMAITAGAAGVGVGSAINKLNDVIAMIAEVRSIANSL 292
BLAST of mRNA_F-serratus_M_contig150.3483.1 vs. uniprot
Match: UPI001882BC92 (DUF561 domain-containing protein n=1 Tax=Cyanobacterium stanieri TaxID=102235 RepID=UPI001882BC92) HSP 1 Score: 272 bits (696), Expect = 2.230e-83 Identity = 147/233 (63.09%), Postives = 181/233 (77.68%), Query Frame = 2
Query: 233 KALKVISGLNKFDADLVSKVARATAAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDSFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLNEQVRLAEELEVLGVDVIQTEGKYSLDPSTGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPAPKAV 931
KALKVISGLN FD V V RA GG T +DIA D E+++ K ++PVCVSAVEP+LF + V AGA+++E+GNFDSFY QG+ F+AEDVL +TR+TRALLP V LSVTVPHTL L+EQV LA++LE G D+IQTEG S +P+ G+ G IE+A+PTLAAAHAISRAV IPV+ ASGLSDVT PMA+A GA GVGVGSAVNKLN ++ M+AVVR++ A+ A +AV
Sbjct: 14 KALKVISGLNNFDVANVVAVCRAAQLGGATFVDIAADVEIIKAVKESIDLPVCVSAVEPQLFVSAVEAGADLIEIGNFDSFYAQGINFSAEDVLSLTRQTRALLPHVLLSVTVPHTLPLDEQVELAQKLEAEGADIIQTEGGTSSNPNHSGILGLIEKASPTLAAAHAISRAVQIPVLCASGLSDVTVPMAIATGASGVGVGSAVNKLNDQVAMIAVVRSLVEALNRSASQAV 246
BLAST of mRNA_F-serratus_M_contig150.3483.1 vs. uniprot
Match: A0A0D6ACD4_9CHRO (IMP dehydrogenase/GMP reductase n=1 Tax=Geminocystis sp. NIES-3708 TaxID=1615909 RepID=A0A0D6ACD4_9CHRO) HSP 1 Score: 272 bits (695), Expect = 3.240e-83 Identity = 144/225 (64.00%), Postives = 176/225 (78.22%), Query Frame = 2
Query: 221 FHAGKALKVISGLNKFDADLVSKVARATAAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDSFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLNEQVRLAEELEVLGVDVIQTEGKYSLDPSTGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAI 895
F KALKVISGLN FD D V V +A GG T +DIA D L++ + + N+P+CVSAV+PEL V AGA++VE+GNFDSFY QG+TFTAEDVL +TR+TRALLP++ LSVTVPHTL L+EQV LA+ L G D+IQTEG S +P+ GV G IE+A+PTLA AHAISRAV +PVM ASGLSDVTAPMA++AGA G+GVGSAVNKLN +I M+AVVR++
Sbjct: 11 FATKKALKVISGLNNFDVDNVVAVCKAAELGGATFVDIAADVNLIKTVRQLINLPICVSAVKPELLANAVEAGADLVEIGNFDSFYAQGITFTAEDVLRLTRETRALLPNITLSVTVPHTLPLDEQVELAQALVTQGADIIQTEGGTSSNPNHSGVLGLIEKASPTLATAHAISRAVEVPVMCASGLSDVTAPMAISAGADGIGVGSAVNKLNDQIAMIAVVRSL 235
BLAST of mRNA_F-serratus_M_contig150.3483.1 vs. uniprot
Match: UPI001F492C80 (DUF561 domain-containing protein n=1 Tax=Leptodesmis sichuanensis TaxID=2906798 RepID=UPI001F492C80) HSP 1 Score: 272 bits (695), Expect = 3.350e-83 Identity = 143/226 (63.27%), Postives = 182/226 (80.53%), Query Frame = 2
Query: 230 GKALKVISGLNKFDADLVSKVARATAAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDSFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLNEQVRLAEELEVLGVDVIQTEGKYSLDPSTGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAM 907
G+ALKVISGLN FD D VS V +A A GG T +DIA DP+LVR+ K + ++PVCVSAVEPELF CVAAGA+++E+GNFDSFY QG F A +VL +T++TR LLP++ LSVTVPH L+L++QV+LAEEL G D+IQTEG S P+ G G IE+A PTLAAA+ ISRAV+IPV+ ASGLS+VTAP+A+AAGA G+GVGSA+NKL+SE+ M+AVVR++ A+
Sbjct: 14 GRALKVISGLNNFDRDRVSAVVKAAAQGGATFVDIAADPDLVRLVKQLIHLPVCVSAVEPELFVTCVAAGADLIEIGNFDSFYAQGRRFEAPEVLALTQETRRLLPAITLSVTVPHILELDQQVQLAEELVKAGADIIQTEGGTSSTPTHAGTLGLIEKATPTLAAAYEISRAVHIPVLCASGLSNVTAPLAIAAGASGIGVGSAINKLSSEVEMIAVVRSLVEAL 239
BLAST of mRNA_F-serratus_M_contig150.3483.1 vs. uniprot
Match: UPI0019F06025 (DUF561 domain-containing protein n=1 Tax=Leptolyngbyaceae cyanobacterium JSC-12 TaxID=864702 RepID=UPI0019F06025) HSP 1 Score: 272 bits (695), Expect = 3.460e-83 Identity = 144/231 (62.34%), Postives = 182/231 (78.79%), Query Frame = 2
Query: 215 APFHAGKALKVISGLNKFDADLVSKVARATAAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDSFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLNEQVRLAEELEVLGVDVIQTEGKYSLDPSTGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAM 907
A G+ALKVISGLN FD D V+ V +A GG T +DIA D +LVR+AK ++++P+CVSAVEPE+F CV AGA+++E+GNFDSFY QG F AE+VL +T+ TR LLPS+ LSVTVPH L L++QV+LAEEL + G D+IQTEG S P+ G G IE+AAPTLA+A+AISRAVN+PV+ ASGLS VTAPMA+AAGA G+GVGSA+NKL SEI M+AVVR++ A+
Sbjct: 9 AVLEQGRALKVISGLNNFDRDRVATVVKAADQGGATFVDIAADADLVRMAKQLTDLPICVSAVEPEMFVTCVDAGADLIEIGNFDSFYAQGRQFEAEEVLALTQATRRLLPSIVLSVTVPHILPLDQQVQLAEELVLAGADIIQTEGGTSSSPAHAGTLGLIEKAAPTLASAYAISRAVNVPVLCASGLSTVTAPMAIAAGASGIGVGSAINKLTSEIEMIAVVRSLVEAL 239 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig150.3483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig150.3483.1 >prot_F-serratus_M_contig150.3483.1 ID=prot_F-serratus_M_contig150.3483.1|Name=mRNA_F-serratus_M_contig150.3483.1|organism=Fucus serratus male|type=polypeptide|length=283bp MKSTYFIFATAALSGAESFCFAPTRMSGDVLAPFHAGKALKVISGLNKFDback to top mRNA from alignment at F-serratus_M_contig150:211282..219078- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig150.3483.1 ID=mRNA_F-serratus_M_contig150.3483.1|Name=mRNA_F-serratus_M_contig150.3483.1|organism=Fucus serratus male|type=mRNA|length=7797bp|location=Sequence derived from alignment at F-serratus_M_contig150:211282..219078- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig150:211282..219078- >mRNA_F-serratus_M_contig150.3483.1 ID=mRNA_F-serratus_M_contig150.3483.1|Name=mRNA_F-serratus_M_contig150.3483.1|organism=Fucus serratus male|type=CDS|length=1698bp|location=Sequence derived from alignment at F-serratus_M_contig150:211282..219078- (Fucus serratus male)back to top |