mRNA_F-serratus_M_contig1498.3416.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1498.3416.1
Unique NamemRNA_F-serratus_M_contig1498.3416.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1498.3416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1498contigF-serratus_M_contig1498:100036..100499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size464
Cds size456
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929474.1923811-UTR-F-serratus_M_contig1498:100035..1000431622929474.1923811-UTR-F-serratus_M_contig1498:100035..100043Fucus serratus maleUTRF-serratus_M_contig1498 100036..100043 +
1690962869.7504904-UTR-F-serratus_M_contig1498:100035..1000431690962869.7504904-UTR-F-serratus_M_contig1498:100035..100043Fucus serratus maleUTRF-serratus_M_contig1498 100036..100043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929474.2058024-CDS-F-serratus_M_contig1498:100043..1004991622929474.2058024-CDS-F-serratus_M_contig1498:100043..100499Fucus serratus maleCDSF-serratus_M_contig1498 100044..100499 +
1690962869.7624943-CDS-F-serratus_M_contig1498:100043..1004991690962869.7624943-CDS-F-serratus_M_contig1498:100043..100499Fucus serratus maleCDSF-serratus_M_contig1498 100044..100499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1498.3416.1prot_F-serratus_M_contig1498.3416.1Fucus serratus malepolypeptideF-serratus_M_contig1498 100044..100499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1498.3416.1

>prot_F-serratus_M_contig1498.3416.1 ID=prot_F-serratus_M_contig1498.3416.1|Name=mRNA_F-serratus_M_contig1498.3416.1|organism=Fucus serratus male|type=polypeptide|length=152bp
MEFNLKFTDLSSKGLFGGNGSTFLRSDETRFDDNKAGVLGGAMSVYENSD
VSGSGDTTYARNSALDSGGAISVLNNCTISWGWKTSFSSNTAENSNGGAL
VVQGRSQAFWSGTASFTSNSAPDGAGGAVYLTEDSTASWKSEATFMSSTA
VT
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mRNA from alignment at F-serratus_M_contig1498:100036..100499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1498.3416.1 ID=mRNA_F-serratus_M_contig1498.3416.1|Name=mRNA_F-serratus_M_contig1498.3416.1|organism=Fucus serratus male|type=mRNA|length=464bp|location=Sequence derived from alignment at F-serratus_M_contig1498:100036..100499+ (Fucus serratus male)
GGGCAGAGATGGAATTCAATCTAAAGTTCACCGACCTATCCAGTAAAGGA
CTGTTCGGTGGTAATGGGTCCACTTTTTTACGGAGTGATGAAACACGATT
CGATGATAACAAAGCTGGCGTTTTGGGGGGTGCAATGTCTGTTTACGAAA
ACTCAGACGTTTCCGGTAGCGGGGATACGACGTACGCCCGAAACAGCGCA
CTTGATAGTGGAGGGGCCATTTCTGTGCTCAACAATTGTACCATATCATG
GGGCTGGAAAACAAGTTTCTCTTCAAATACGGCAGAAAACAGTAATGGAG
GTGCGCTTGTAGTCCAAGGCAGGTCTCAAGCCTTTTGGAGCGGAACGGCA
AGCTTTACCAGCAACAGTGCTCCAGATGGTGCTGGCGGTGCCGTATATCT
AACCGAGGATTCAACCGCTTCGTGGAAATCTGAAGCGACCTTTATGAGTA
GTACTGCAGTTACA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1498:100036..100499+

>mRNA_F-serratus_M_contig1498.3416.1 ID=mRNA_F-serratus_M_contig1498.3416.1|Name=mRNA_F-serratus_M_contig1498.3416.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig1498:100036..100499+ (Fucus serratus male)
ATGGAATTCAATCTAAAGTTCACCGACCTATCCAGTAAAGGACTGTTCGG
TGGTAATGGGTCCACTTTTTTACGGAGTGATGAAACACGATTCGATGATA
ACAAAGCTGGCGTTTTGGGGGGTGCAATGTCTGTTTACGAAAACTCAGAC
GTTTCCGGTAGCGGGGATACGACGTACGCCCGAAACAGCGCACTTGATAG
TGGAGGGGCCATTTCTGTGCTCAACAATTGTACCATATCATGGGGCTGGA
AAACAAGTTTCTCTTCAAATACGGCAGAAAACAGTAATGGAGGTGCGCTT
GTAGTCCAAGGCAGGTCTCAAGCCTTTTGGAGCGGAACGGCAAGCTTTAC
CAGCAACAGTGCTCCAGATGGTGCTGGCGGTGCCGTATATCTAACCGAGG
ATTCAACCGCTTCGTGGAAATCTGAAGCGACCTTTATGAGTAGTACTGCA
GTTACAATGGAATTCAATCTAAAGTTCACCGACCTATCCAGTAAAGGACT
GTTCGGTGGTAATGGGTCCACTTTTTTACGGAGTGATGAAACACGATTCG
ATGATAACAAAGCTGGCGTTTTGGGGGGTGCAATGTCTGTTTACGAAAAC
TCAGACGTTTCCGGTAGCGGGGATACGACGTACGCCCGAAACAGCGCACT
TGATAGTGGAGGGGCCATTTCTGTGCTCAACAATTGTACCATATCATGGG
GCTGGAAAACAAGTTTCTCTTCAAATACGGCAGAAAACAGTAATGGAGGT
GCGCTTGTAGTCCAAGGCAGGTCTCAAGCCTTTTGGAGCGGAACGGCAAG
CTTTACCAGCAACAGTGCTCCAGATGGTGCTGGCGGTGCCGTATATCTAA
CCGAGGATTCAACCGCTTCGTGGAAATCTGAAGCGACCTTTATGAGTAGT
ACTGCAGTTACA
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