mRNA_F-serratus_M_contig1498.3414.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 123 bits (309), Expect = 1.720e-30 Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 1
Query: 1 TSRLVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLGYDSSNNLYEVLCNGCEEPCKGCYFERASMTPFCSKTMENTHSPGDLTTLEMVVIDRGYWR 330
T+ + NCSFVEN+SD+G G A++NIG++S +SN SF N C G FL + S LYE +C+GC C+GC FE + P CS +E+++S G TL+ +VI+ GYWR
Sbjct: 420 TAEVNNCSFVENVSDDGGGAAVSNIGFVSSVSNLSFSRNVYGCQEGMFLECEESGTLYEAICDGCPVECEGCSFEEPQLVPKCSDALEHSNSSGGTVTLDALVIEPGYWR 529
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 114 bits (284), Expect = 4.100e-27 Identity = 49/110 (44.55%), Postives = 74/110 (67.27%), Query Frame = 1
Query: 1 TSRLVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLGYDSSNNLYEVLCNGCEEPCKGCYFERASMTPFCSKTMENTHSPGDLTTLEMVVIDRGYWR 330
T+ + NCSFV+N+SD+G G A++NIG++S +++ F +N C G FL ++S + +E +C GC+ C GC FE+ + P CS+ M ++ S G TTL+ V IDRGYWR
Sbjct: 670 TASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTFLDLNASGDPFEAVCAGCDIVCDGCVFEQGLVGPACSEVMAHSTSTGGNTTLQEVSIDRGYWR 779
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 103 bits (257), Expect = 1.790e-23 Identity = 50/107 (46.73%), Postives = 67/107 (62.62%), Query Frame = 1
Query: 10 LVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLGYDSSNNLYEVLCNGCEEPCKGCYFERASMTPFCSKTMENTHSPGDLTTLEMVVIDRGYWR 330
LVNCSFVEN+SD+G G A++N+G +S ISN +F N +C FL Y S + L E C+GC+ C GC + + P CS + ++ S G L TLE + ID GYWR
Sbjct: 466 LVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGNVFNCAPDTFLNYTSGDALDEA-CSGCQTTCDGCV--QPPVVPLCSDVIPHSRSDGGLVTLETLSIDPGYWR 569
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 102 bits (254), Expect = 4.660e-23 Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 1 TSRLVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLGYDSSNNLYEVLCNGCEEPCK--GCYFERASMTPFCSKTMENTHSPGDLTTLEMVVIDRGYWR 330
T+ L NCSFVEN+S++G G A++NIG +S + N S+ N SC G FL +++S + E C+GC+ PC GC FE + P C+ ME+T S G + ++ +D G+WR
Sbjct: 1509 TATLENCSFVENVSEDGGGAAVSNIGSISKMDNISYRGNVFSCALGMFLDFNASGDPNEAACDGCQTPCDDDGC-FEEPPLVPICALAMEHTGSAGGTNNITLLRVDDGFWR 1619
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 101 bits (251), Expect = 1.170e-22 Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 1
Query: 1 TSRLVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLGYDSSNNLYEVLCNGCEEPCKGCYFERASMTPFCSKTMENTHSPGDLTTLEMVVIDRGYWR 330
T+ ++NCSFVEN S++G G A++NIG +S +F N C G FL Y+ S++L+E +C+GC+ F + P C +E++ SP TLE + I RGYWR
Sbjct: 863 TASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXAFAEPLLVPMCRDLLEHSTSPDGKLTLEALSIQRGYWR 972
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 3.070e-20 Identity = 48/118 (40.68%), Postives = 64/118 (54.24%), Query Frame = 1
Query: 10 LVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLGYD------------SSNNLYEVLCNGCEEPCKGCYFERASMTPFCSKTMENTHSPGDLTTLEMVVIDRGYW 327
L NCSFVEN+SDEG G A++N+G +S ISN SF N +C FL Y S + + C+GC+ C GC + P CS + ++ S G L TLE ++ID GYW
Sbjct: 460 LENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGNVFNCAPDTFLNYTVRDTMLTCSLSTMSGDPLDEACSGCQATCDGC--AQPPAVPLCSDVIPDSRSDGGLVTLETLLIDPGYW 575
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 66.6 bits (161), Expect = 1.700e-10 Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 1
Query: 10 LVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLGYDSSN-------NLYEVLCNGCE 198
LVNCSFVENISDEG G A++N+G +S ISN SF N +C FL Y ++ ++Y+ L NG +
Sbjct: 2379 LVNCSFVENISDEGEGAAVSNVGVISEISNTSFSGNVFNCAPDTFLNYTFTSAANVTYPDVYQRLLNGLD 2448 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1498.3414.1 >prot_F-serratus_M_contig1498.3414.1 ID=prot_F-serratus_M_contig1498.3414.1|Name=mRNA_F-serratus_M_contig1498.3414.1|organism=Fucus serratus male|type=polypeptide|length=110bp TSRLVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLGback to top mRNA from alignment at F-serratus_M_contig1498:31045..31705- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1498.3414.1 ID=mRNA_F-serratus_M_contig1498.3414.1|Name=mRNA_F-serratus_M_contig1498.3414.1|organism=Fucus serratus male|type=mRNA|length=661bp|location=Sequence derived from alignment at F-serratus_M_contig1498:31045..31705- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1498:31045..31705- >mRNA_F-serratus_M_contig1498.3414.1 ID=mRNA_F-serratus_M_contig1498.3414.1|Name=mRNA_F-serratus_M_contig1498.3414.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig1498:31045..31705- (Fucus serratus male)back to top |