mRNA_F-serratus_M_contig1498.3414.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1498.3414.1
Unique NamemRNA_F-serratus_M_contig1498.3414.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.720e-30
Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 TSRLVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLGYDSSNNLYEVLCNGCEEPCKGCYFERASMTPFCSKTMENTHSPGDLTTLEMVVIDRGYWR 330
            T+ + NCSFVEN+SD+G G A++NIG++S +SN SF  N   C  G FL  + S  LYE +C+GC   C+GC FE   + P CS  +E+++S G   TL+ +VI+ GYWR
Sbjct:  420 TAEVNNCSFVENVSDDGGGAAVSNIGFVSSVSNLSFSRNVYGCQEGMFLECEESGTLYEAICDGCPVECEGCSFEEPQLVPKCSDALEHSNSSGGTVTLDALVIEPGYWR 529          
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 4.100e-27
Identity = 49/110 (44.55%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 TSRLVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLGYDSSNNLYEVLCNGCEEPCKGCYFERASMTPFCSKTMENTHSPGDLTTLEMVVIDRGYWR 330
            T+ + NCSFV+N+SD+G G A++NIG++S +++  F +N   C  G FL  ++S + +E +C GC+  C GC FE+  + P CS+ M ++ S G  TTL+ V IDRGYWR
Sbjct:  670 TASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTFLDLNASGDPFEAVCAGCDIVCDGCVFEQGLVGPACSEVMAHSTSTGGNTTLQEVSIDRGYWR 779          
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.790e-23
Identity = 50/107 (46.73%), Postives = 67/107 (62.62%), Query Frame = 1
Query:   10 LVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLGYDSSNNLYEVLCNGCEEPCKGCYFERASMTPFCSKTMENTHSPGDLTTLEMVVIDRGYWR 330
            LVNCSFVEN+SD+G G A++N+G +S ISN +F  N  +C    FL Y S + L E  C+GC+  C GC   +  + P CS  + ++ S G L TLE + ID GYWR
Sbjct:  466 LVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGNVFNCAPDTFLNYTSGDALDEA-CSGCQTTCDGCV--QPPVVPLCSDVIPHSRSDGGLVTLETLSIDPGYWR 569          
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 4.660e-23
Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 TSRLVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLGYDSSNNLYEVLCNGCEEPCK--GCYFERASMTPFCSKTMENTHSPGDLTTLEMVVIDRGYWR 330
            T+ L NCSFVEN+S++G G A++NIG +S + N S+  N  SC  G FL +++S +  E  C+GC+ PC   GC FE   + P C+  ME+T S G    + ++ +D G+WR
Sbjct: 1509 TATLENCSFVENVSEDGGGAAVSNIGSISKMDNISYRGNVFSCALGMFLDFNASGDPNEAACDGCQTPCDDDGC-FEEPPLVPICALAMEHTGSAGGTNNITLLRVDDGFWR 1619          
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.170e-22
Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 1
Query:    1 TSRLVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLGYDSSNNLYEVLCNGCEEPCKGCYFERASMTPFCSKTMENTHSPGDLTTLEMVVIDRGYWR 330
            T+ ++NCSFVEN S++G G A++NIG +S     +F  N   C  G FL Y+ S++L+E +C+GC+       F    + P C   +E++ SP    TLE + I RGYWR
Sbjct:  863 TASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXAFAEPLLVPMCRDLLEHSTSPDGKLTLEALSIQRGYWR 972          
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.070e-20
Identity = 48/118 (40.68%), Postives = 64/118 (54.24%), Query Frame = 1
Query:   10 LVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLGYD------------SSNNLYEVLCNGCEEPCKGCYFERASMTPFCSKTMENTHSPGDLTTLEMVVIDRGYW 327
            L NCSFVEN+SDEG G A++N+G +S ISN SF  N  +C    FL Y              S +  +  C+GC+  C GC   +    P CS  + ++ S G L TLE ++ID GYW
Sbjct:  460 LENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGNVFNCAPDTFLNYTVRDTMLTCSLSTMSGDPLDEACSGCQATCDGC--AQPPAVPLCSDVIPDSRSDGGLVTLETLLIDPGYW 575          
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.700e-10
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   10 LVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLGYDSSN-------NLYEVLCNGCE 198
            LVNCSFVENISDEG G A++N+G +S ISN SF  N  +C    FL Y  ++       ++Y+ L NG +
Sbjct: 2379 LVNCSFVENISDEGEGAAVSNVGVISEISNTSFSGNVFNCAPDTFLNYTFTSAANVTYPDVYQRLLNGLD 2448          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1498.3414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G2Z8_ECTSI1.720e-3047.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTL7_ECTSI4.100e-2744.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FHH1_ECTSI1.790e-2346.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5Y7_ECTSI4.660e-2341.96Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LIY0_ECTSI1.170e-2240.00Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5KR67_9PHAE3.070e-2040.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHG7_ECTSI1.700e-1047.14LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1498contigF-serratus_M_contig1498:31045..31705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue4.3e-26
Seed eggNOG ortholog2880.D7G2Z8
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size333
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929474.278298-CDS-F-serratus_M_contig1498:31045..312161622929474.278298-CDS-F-serratus_M_contig1498:31045..31216Fucus serratus maleCDSF-serratus_M_contig1498 31046..31216 -
1690962869.7753534-CDS-F-serratus_M_contig1498:31045..312161690962869.7753534-CDS-F-serratus_M_contig1498:31045..31216Fucus serratus maleCDSF-serratus_M_contig1498 31046..31216 -
1622929474.2960274-CDS-F-serratus_M_contig1498:31546..317051622929474.2960274-CDS-F-serratus_M_contig1498:31546..31705Fucus serratus maleCDSF-serratus_M_contig1498 31547..31705 -
1690962869.7874482-CDS-F-serratus_M_contig1498:31546..317051690962869.7874482-CDS-F-serratus_M_contig1498:31546..31705Fucus serratus maleCDSF-serratus_M_contig1498 31547..31705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1498.3414.1prot_F-serratus_M_contig1498.3414.1Fucus serratus malepolypeptideF-serratus_M_contig1498 31046..31705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1498.3414.1

>prot_F-serratus_M_contig1498.3414.1 ID=prot_F-serratus_M_contig1498.3414.1|Name=mRNA_F-serratus_M_contig1498.3414.1|organism=Fucus serratus male|type=polypeptide|length=110bp
TSRLVNCSFVENISDEGRGPAIANIGYLSGISNCSFYENALSCDRGEFLG
YDSSNNLYEVLCNGCEEPCKGCYFERASMTPFCSKTMENTHSPGDLTTLE
MVVIDRGYWR
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mRNA from alignment at F-serratus_M_contig1498:31045..31705-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1498.3414.1 ID=mRNA_F-serratus_M_contig1498.3414.1|Name=mRNA_F-serratus_M_contig1498.3414.1|organism=Fucus serratus male|type=mRNA|length=661bp|location=Sequence derived from alignment at F-serratus_M_contig1498:31045..31705- (Fucus serratus male)
ACGAGTCGTCTTGTGAACTGCTCGTTCGTGGAAAATATATCGGATGAGGG AAGAGGTCCGGCCATCGCCAACATCGGCTACTTGAGTGGTATTTCAAACT GCTCCTTCTATGAGAACGCTTTGAGCTGCGATCGAGGCGAGTTCCTCGGA TATGATTCGGTGAGTTGGAAAATGAAATAATAGCTGATGCCGTAGCGTAG CTTTCAATTCTAACCATTCGGGATCGGATTATTAGATACTACCAGTATTT ATTAGTTGAATATTTCCATAAAATAAACATTTCCCTGTTGGCAACAACTT GCACTGTACATAGATCAACCCGTGTATAGTACCCGTCGCGTGAACGTATA CAGGACTAGAGCCTGTTTTCTCAAGACGGGTTGATGTATTTCAAGATAAT ACGAGAAAAATATAAAATATAAACAAAAAACAATGAAAAAAAAAAAATTG TGATTATTTATCCGTGCCCGTTTCGTCCGTCTGTTGCAGTCCAACAATTT ATATGAGGTATTGTGTAATGGATGTGAAGAACCATGCAAGGGGTGCTATT TTGAGCGCGCCTCGATGACTCCATTTTGCTCCAAGACAATGGAAAATACT CACAGCCCTGGAGACTTGACCACACTTGAGATGGTGGTGATCGACCGGGG ATATTGGCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1498:31045..31705-

>mRNA_F-serratus_M_contig1498.3414.1 ID=mRNA_F-serratus_M_contig1498.3414.1|Name=mRNA_F-serratus_M_contig1498.3414.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig1498:31045..31705- (Fucus serratus male)
ACGAGTCGTCTTGTGAACTGCTCGTTCGTGGAAAATATATCGGATGAGGG
AAGAGGTCCGGCCATCGCCAACATCGGCTACTTGAGTGGTATTTCAAACT
GCTCCTTCTATGAGAACGCTTTGAGCTGCGATCGAGGCGAGTTCCTCGGA
TATGATTCGACGAGTCGTCTTGTGAACTGCTCGTTCGTGGAAAATATATC
GGATGAGGGAAGAGGTCCGGCCATCGCCAACATCGGCTACTTGAGTGGTA
TTTCAAACTGCTCCTTCTATGAGAACGCTTTGAGCTGCGATCGAGGCGAG
TTCCTCGGATATGATTCGTCCAACAATTTATATGAGGTATTGTGTAATGG
ATGTGAAGAACCATGCAAGGGGTGCTATTTTGAGCGCGCCTCGATGACTC
CATTTTGCTCCAAGACAATGGAAAATACTCACAGCCCTGGAGACTTGACC
ACACTTGAGATGGTGGTGATCGACCGGGGATATTGGCGATCCAACAATTT
ATATGAGGTATTGTGTAATGGATGTGAAGAACCATGCAAGGGGTGCTATT
TTGAGCGCGCCTCGATGACTCCATTTTGCTCCAAGACAATGGAAAATACT
CACAGCCCTGGAGACTTGACCACACTTGAGATGGTGGTGATCGACCGGGG
ATATTGGCGA
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