mRNA_F-serratus_M_contig1497.3413.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1497.3413.1
Unique NamemRNA_F-serratus_M_contig1497.3413.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1497.3413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1497contigF-serratus_M_contig1497:27453..27786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size163
Cds size117
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1497.3413.1prot_F-serratus_M_contig1497.3413.1Fucus serratus malepolypeptideF-serratus_M_contig1497 27453..27740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929474.091591-CDS-F-serratus_M_contig1497:27452..275331622929474.091591-CDS-F-serratus_M_contig1497:27452..27533Fucus serratus maleCDSF-serratus_M_contig1497 27453..27533 +
1690962869.7075405-CDS-F-serratus_M_contig1497:27452..275331690962869.7075405-CDS-F-serratus_M_contig1497:27452..27533Fucus serratus maleCDSF-serratus_M_contig1497 27453..27533 +
1622929474.110823-CDS-F-serratus_M_contig1497:27704..277401622929474.110823-CDS-F-serratus_M_contig1497:27704..27740Fucus serratus maleCDSF-serratus_M_contig1497 27705..27740 +
1690962869.7165189-CDS-F-serratus_M_contig1497:27704..277401690962869.7165189-CDS-F-serratus_M_contig1497:27704..27740Fucus serratus maleCDSF-serratus_M_contig1497 27705..27740 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929474.1258032-UTR-F-serratus_M_contig1497:27740..277861622929474.1258032-UTR-F-serratus_M_contig1497:27740..27786Fucus serratus maleUTRF-serratus_M_contig1497 27741..27786 +
1690962869.7313504-UTR-F-serratus_M_contig1497:27740..277861690962869.7313504-UTR-F-serratus_M_contig1497:27740..27786Fucus serratus maleUTRF-serratus_M_contig1497 27741..27786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1497.3413.1

>prot_F-serratus_M_contig1497.3413.1 ID=prot_F-serratus_M_contig1497.3413.1|Name=mRNA_F-serratus_M_contig1497.3413.1|organism=Fucus serratus male|type=polypeptide|length=39bp
GYDHESSTHRHFISLLTFLLKKGVMMKVDYELRVQDQE*
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mRNA from alignment at F-serratus_M_contig1497:27453..27786+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1497.3413.1 ID=mRNA_F-serratus_M_contig1497.3413.1|Name=mRNA_F-serratus_M_contig1497.3413.1|organism=Fucus serratus male|type=mRNA|length=334bp|location=Sequence derived from alignment at F-serratus_M_contig1497:27453..27786+ (Fucus serratus male)
GGGTATGATCACGAGAGCAGCACCCATCGGCATTTCATCTCCCTTCTGAC
TTTCCTTTTGAAAAAGGGTGTCATGATGAAGGTGTGTGATCGAGTCACAG
ACAACTACAAAATGGACGTGAAACTGAGGATCGAACGACAGTTCTGACTG
ACGACAGTGTCCATTATTACCTTAGGGCGAGGCAAAATACCTCGCGCGTG
GTTTTGTTTCTGGATTCGAAAATTTCCCATACAGCATAATTTGTTTTGAC
AGGTGGACTACGAGCTTCGAGTACAAGACCAAGAGTAGCATCTCTCCAGG
CCACCGTAAGAGACGACGAGGGCGTAATGTTCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1497:27453..27786+

>mRNA_F-serratus_M_contig1497.3413.1 ID=mRNA_F-serratus_M_contig1497.3413.1|Name=mRNA_F-serratus_M_contig1497.3413.1|organism=Fucus serratus male|type=CDS|length=234bp|location=Sequence derived from alignment at F-serratus_M_contig1497:27453..27786+ (Fucus serratus male)
GGGTATGATCACGAGAGCAGCACCCATCGGCATTTCATCTCCCTTCTGAC
TTTCCTTTTGAAAAAGGGTGTCATGATGAAGGGGTATGATCACGAGAGCA
GCACCCATCGGCATTTCATCTCCCTTCTGACTTTCCTTTTGAAAAAGGGT
GTCATGATGAAGGTGGACTACGAGCTTCGAGTACAAGACCAAGAGTAGGT
GGACTACGAGCTTCGAGTACAAGACCAAGAGTAG
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