mRNA_F-serratus_M_contig1496.3412.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1496.3412.1
Unique NamemRNA_F-serratus_M_contig1496.3412.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1496.3412.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 5.060e-26
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 CEHLEDGKYYLRADYRIECDSGKHINLQIYAGFMAMLYTVGIPVFYAILLFRNRDVLVKNDSCRNRCSRISSTSSLWRPY 240
            C+ LEDGK YLR DYRIECDS KH   Q+YAGFM +LY +GIP+ Y+ILLF++R+VL K+ + R+  +R+ STS LW+PY
Sbjct: 1208 CDELEDGKNYLRTDYRIECDSSKHKVFQVYAGFMILLYPLGIPMLYSILLFKDREVLKKDKADRDDSARVKSTSELWQPY 1287          
BLAST of mRNA_F-serratus_M_contig1496.3412.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.760e-25
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 CEHLEDGKYYLRADYRIECDSGKHINLQIYAGFMAMLYTVGIPVFYAILLFRNRDVLVKNDSCRNRCSRISSTSSLWRPY 240
            C+ LEDG Y LR DYRIECDS KH   Q+YAGFM +LY +GIPV Y+ILLFR+R+VL K+ + RN  +R+ STS LW+PY
Sbjct: 1268 CDELEDGNY-LRTDYRIECDSSKHKVFQVYAGFMILLYPLGIPVLYSILLFRDREVLKKDKADRNDSARVKSTSELWQPY 1346          
BLAST of mRNA_F-serratus_M_contig1496.3412.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.410e-25
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 CEHLEDGKYYLRADYRIECDSGKHINLQIYAGFMAMLYTVGIPVFYAILLFRNRDVLVKNDSCRNRCSRISSTSSLWRPY 240
            CE L DG+ YLRADYRI CDS KH  LQ+YAG M ++YTVGIP  Y +LLFR+RDVL ++ + R   +R+ STS LW+PY
Sbjct: 1848 CESLADGETYLRADYRITCDSSKHKALQVYAGVMVVVYTVGIPALYGVLLFRDRDVLKRSGADREETARVISTSELWKPY 1927          
BLAST of mRNA_F-serratus_M_contig1496.3412.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.550e-24
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 CEHLEDGKYYLRADYRIECDSGKHINLQIYAGFMAMLYTVGIPVFYAILLFRNRDVLVKNDSCRNRCSRISSTSSLWRPY 240
            CE L DGK YLR+DYRIECDS  H   Q+YAGFM +LY VGIP  YA LLFR+RDVL K++  R    R++STS LW PY
Sbjct: 1011 CEELHDGKNYLRSDYRIECDSSGHKAFQVYAGFMIVLYPVGIPALYAGLLFRDRDVLRKDEINREDPPRVTSTSHLWEPY 1090          
BLAST of mRNA_F-serratus_M_contig1496.3412.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.140e-24
Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 CEHLEDGKYYLRADYRIECDSGKHINLQIYAGFMAMLYTVGIPVFYAILLFRNRDVLVKNDSCRNRCSRISSTSSLWRPY 240
            C+ LE G  YLRADYRIECDS KH   ++YAGFM +LY VGIP FY  LLFR+RDVL K+   R    R++S S+LW+PY
Sbjct: 2536 CDQLEGGGEYLRADYRIECDSSKHQGFRVYAGFMILLYPVGIPAFYGALLFRDRDVLEKDPDGREDPPRVASISNLWQPY 2615          
BLAST of mRNA_F-serratus_M_contig1496.3412.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.870e-24
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 CEHLEDGKYYLRADYRIECDSGKHINLQIYAGFMAMLYTVGIPVFYAILLFRNRDVLVKNDSCRNRCSRISSTSSLWRPY 240
            CE L+D K YLRADYRIECDS KH   Q+YAGFM +LYTVGIP  Y   LFR+ DVL ++++ R + +RI+ T+ LW+PY
Sbjct:  758 CEELDDRKNYLRADYRIECDSPKHSAFQVYAGFMIVLYTVGIPALYGGFLFRDSDVLRRDEADREQLARIAPTADLWKPY 837          
BLAST of mRNA_F-serratus_M_contig1496.3412.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.900e-24
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 CEHLEDGKYYLRADYRIECDSGKHINLQIYAGFMAMLYTVGIPVFYAILLFRNRDVLVKNDSC-RNRCSRISSTSSLWRPY 240
            CE LEDGK YL ADYRIECDS KH   ++YAGFM +LYT GIP  Y+ LLFR+RDVL   ++  ++  SR +STS LW+PY
Sbjct: 1392 CETLEDGKTYLLADYRIECDSSKHKRFEVYAGFMVLLYTAGIPALYSFLLFRDRDVLKGREAAGQDLRSRATSTSDLWKPY 1472          
BLAST of mRNA_F-serratus_M_contig1496.3412.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 3.940e-24
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 CEHLEDGKYYLRADYRIECDSGKHINLQIYAGFMAMLYTVGIPVFYAILLFRNRDVLVKNDSCRNRCSRISSTSSLWRPY 240
            CE LEDG  YLRADY I+CDS KH   Q+YAGFM ++Y VGIP  YA LLFR+R VL  + + R + +R +STS LW+PY
Sbjct: 1037 CEELEDGTNYLRADYTIDCDSSKHKAFQVYAGFMVVVYVVGIPALYAFLLFRDRHVLKDHHADREQTARTTSTSDLWKPY 1116          
BLAST of mRNA_F-serratus_M_contig1496.3412.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 5.380e-24
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 CEHLEDGKYYLRADYRIECDSGKHINLQIYAGFMAMLYTVGIPVFYAILLFRNRDVLVKNDSCRNRC-SRISSTSSLWRPY 240
            CE L DGK YLRADYRIECDS +H   ++YAG M ++YTVGIP  Y  LL+R+RD L + D+C+    SR++STS LW+PY
Sbjct: 1202 CETLGDGKNYLRADYRIECDSSRHKGFEVYAGIMMLVYTVGIPGLYGFLLYRDRDFLKERDTCQEPPPSRVTSTSDLWKPY 1282          
BLAST of mRNA_F-serratus_M_contig1496.3412.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.360e-23
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 CEHLEDGKYYLRADYRIECDSGKHINLQIYAGFMAMLYTVGIPVFYAILLFRNRDVLVKNDSCRNRCSRISSTSSLWRPY 240
            C+ LE G  YLRADYRIECDS KH   ++YAGFM +LY VGIP FY  LL R+RDVL K+   R    R++S S+LW+PY
Sbjct:  798 CDQLEGGGEYLRADYRIECDSSKHQGFRVYAGFMILLYPVGIPAFYGALLLRDRDVLEKDPDGREDPPRVASISNLWQPY 877          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1496.3412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2X5_ECTSI5.060e-2660.00Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5K7Z1_9PHAE1.760e-2562.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5Y7_ECTSI2.410e-2560.00Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FTL7_ECTSI1.550e-2462.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FHG7_ECTSI2.140e-2460.00LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2Z8_ECTSI2.870e-2458.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSC0_ECTSI2.900e-2460.49Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7G301_ECTSI3.940e-2458.75Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LIY0_ECTSI5.380e-2458.02Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FHH1_ECTSI1.360e-2358.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1496contigF-serratus_M_contig1496:181772..182012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1e-21
Seed eggNOG ortholog2880.D7G2X5
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size242
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929474.0129893-CDS-F-serratus_M_contig1496:181771..1820111622929474.0129893-CDS-F-serratus_M_contig1496:181771..182011Fucus serratus maleCDSF-serratus_M_contig1496 181772..182011 +
1690962869.691694-CDS-F-serratus_M_contig1496:181771..1820111690962869.691694-CDS-F-serratus_M_contig1496:181771..182011Fucus serratus maleCDSF-serratus_M_contig1496 181772..182011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1496.3412.1prot_F-serratus_M_contig1496.3412.1Fucus serratus malepolypeptideF-serratus_M_contig1496 181772..182011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1496.3412.1

>prot_F-serratus_M_contig1496.3412.1 ID=prot_F-serratus_M_contig1496.3412.1|Name=mRNA_F-serratus_M_contig1496.3412.1|organism=Fucus serratus male|type=polypeptide|length=80bp
CEHLEDGKYYLRADYRIECDSGKHINLQIYAGFMAMLYTVGIPVFYAILL
FRNRDVLVKNDSCRNRCSRISSTSSLWRPY
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mRNA from alignment at F-serratus_M_contig1496:181772..182012+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1496.3412.1 ID=mRNA_F-serratus_M_contig1496.3412.1|Name=mRNA_F-serratus_M_contig1496.3412.1|organism=Fucus serratus male|type=mRNA|length=241bp|location=Sequence derived from alignment at F-serratus_M_contig1496:181772..182012+ (Fucus serratus male)
TGCGAGCATCTCGAAGACGGGAAGTACTACCTTCGCGCCGACTACCGTAT CGAATGTGATTCTGGGAAACACATAAATCTTCAAATATACGCTGGATTTA TGGCCATGCTGTACACGGTGGGGATACCGGTCTTCTACGCTATTCTTTTG TTTAGGAACCGTGACGTGCTAGTAAAAAATGACTCCTGCCGAAACAGGTG CTCCCGAATTAGTTCAACCAGCAGTCTGTGGCGGCCGTATA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1496:181772..182012+

>mRNA_F-serratus_M_contig1496.3412.1 ID=mRNA_F-serratus_M_contig1496.3412.1|Name=mRNA_F-serratus_M_contig1496.3412.1|organism=Fucus serratus male|type=CDS|length=480bp|location=Sequence derived from alignment at F-serratus_M_contig1496:181772..182012+ (Fucus serratus male)
TGCGAGCATCTCGAAGACGGGAAGTACTACCTTCGCGCCGACTACCGTAT
CGAATGTGATTCTGGGAAACACATAAATCTTCAAATATACGCTGGATTTA
TGGCCATGCTGTACACGGTGGGGATACCGGTCTTCTACGCTATTCTTTTG
TTTAGGAACCGTGACGTGCTAGTAAAAAATGACTCCTGCCGAAACAGGTG
CTCCCGAATTAGTTCAACCAGCAGTCTGTGGCGGCCGTATTGCGAGCATC
TCGAAGACGGGAAGTACTACCTTCGCGCCGACTACCGTATCGAATGTGAT
TCTGGGAAACACATAAATCTTCAAATATACGCTGGATTTATGGCCATGCT
GTACACGGTGGGGATACCGGTCTTCTACGCTATTCTTTTGTTTAGGAACC
GTGACGTGCTAGTAAAAAATGACTCCTGCCGAAACAGGTGCTCCCGAATT
AGTTCAACCAGCAGTCTGTGGCGGCCGTAT
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