mRNA_F-serratus_M_contig1495.3407.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1495.3407.1
Unique NamemRNA_F-serratus_M_contig1495.3407.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1495.3407.1 vs. uniprot
Match: A0A6H5K5I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.700e-28
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    1 MSACRVSVEWAFGEVSRLWTFCNYKHQQKCLLSPVATQYRVSVFLTNLHTCLNGGNQISDYFGMKPPTPEQYLGI 225
            MS CRV+VEW F +++  W F + K QQK LLSPVATQY+V+  L+N H+CLNGGNQIS YFG++PPT E+YL +
Sbjct:    8 MSQCRVTVEWGFKDMTSKWAFVDMKCQQKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYLKV 82
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BLAST of mRNA_F-serratus_M_contig1495.3407.1 vs. uniprot
Match: A0A6H5K6F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6F4_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.710e-26
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:    1 MSACRVSVEWAFGEVSRLWTFCNYKHQQKCLLSPVATQYRVSVFLTNLHTCLNGGNQISDYFGMKPPTPEQYLGI 225
            MS CRV+VEW F E++  W F N K QQK LLSPVA QY V+  L+N H+C+NGGN+IS YFG+ PPT E+Y+ +
Sbjct:    1 MSHCRVTVEWGFKEMTGKWAFVNMKPQQKFLLSPVAKQYLVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 75
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BLAST of mRNA_F-serratus_M_contig1495.3407.1 vs. uniprot
Match: A0A6H5KLS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLS3_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 4.150e-26
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 MSACRVSVEWAFGEVSRLWTFCNYKHQQKCLLSPVATQYRVSVFLTNLHTCLNGGNQISDYFGMKPPTPEQYLGI 225
            +SACRV+VEW F E+   W F N K QQK LLSPVA QYRV+  L+N H+CLNGGN+IS YFG+ PP+ E+YLG+
Sbjct:  623 ISACRVTVEWGFKEICNYWAFVNMKQQQKSLLSPVAVQYRVATLLSNWHSCLNGGNEISQYFGVGPPSFEEYLGV 697
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BLAST of mRNA_F-serratus_M_contig1495.3407.1 vs. uniprot
Match: A0A024T893_9STRA (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T893_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.060e-26
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    1 MSACRVSVEWAFGEVSRLWTFCNYKHQQKCLLSPVATQYRVSVFLTNLHTCLNGGNQISDYFGMKPPTPEQYLGI 225
            MS+ RVSVEW FG V  LWTF +YK+ QK  L  V  QY V+V LTN+HTC+  GNQIS YFG+ PPT E+YL +
Sbjct:   39 MSSVRVSVEWGFGVVRNLWTFVDYKNGQKLWLQAVGVQYAVAVILTNIHTCMKRGNQISSYFGVMPPTAEEYLHV 113
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BLAST of mRNA_F-serratus_M_contig1495.3407.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 7.090e-26
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    1 MSACRVSVEWAFGEVSRLWTFCNYKHQQKCLLSPVATQYRVSVFLTNLHTCLNGGNQISDYFGMKPPTPEQYLGI 225
            MS CRV+VEW F E++  W F + K QQK LLSPVATQY+V+  L+N H+CLNGGNQIS YFG++PPT E+YL +
Sbjct:  346 MSQCRVTVEWGFKEMTSKWAFVDMKCQQKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYLKV 420
[Close]
BLAST of mRNA_F-serratus_M_contig1495.3407.1 vs. uniprot
Match: A0A6H5JM46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM46_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.980e-25
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 MSACRVSVEWAFGEVSRLWTFCNYKHQQKCLLSPVATQYRVSVFLTNLHTCLNGGNQISDYFGMKPPTPEQYLGI 225
            MS CRV+VEW F E++  W F + K Q K LLSPVATQY+V+  L+N H+CLNGGNQIS YFG++PPT E+YL +
Sbjct:  267 MSRCRVTVEWGFKEMTSKWAFIDMKCQHKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYLKL 341
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BLAST of mRNA_F-serratus_M_contig1495.3407.1 vs. uniprot
Match: A0A6H5KVK0_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK0_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 3.160e-25
Identity = 44/75 (58.67%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    1 MSACRVSVEWAFGEVSRLWTFCNYKHQQKCLLSPVATQYRVSVFLTNLHTCLNGGNQISDYFGMKPPTPEQYLGI 225
            MS CRV+VEW F E++  W F + K QQK LLSPVA QYRV+  L+N H+C+NGGN+IS YFG+ PPT E+Y+ +
Sbjct:  107 MSHCRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 181
[Close]
BLAST of mRNA_F-serratus_M_contig1495.3407.1 vs. uniprot
Match: A0A6H5KY46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY46_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 7.830e-25
Identity = 44/75 (58.67%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    1 MSACRVSVEWAFGEVSRLWTFCNYKHQQKCLLSPVATQYRVSVFLTNLHTCLNGGNQISDYFGMKPPTPEQYLGI 225
            MS CRV+VEW F E++  W F + K QQK LLSPVA QYRV+  L+N H+C+NGGN+IS YFG+ PPT E+Y+ +
Sbjct:  156 MSHCRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 230
[Close]
BLAST of mRNA_F-serratus_M_contig1495.3407.1 vs. uniprot
Match: A0A6H5KH29_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH29_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.220e-24
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    1 MSACRVSVEWAFGEVSRLWTFCNYKHQQKCLLSPVATQYRVSVFLTNLHTCLNGGNQISDYFGMKPPTPEQYLGI 225
            MS CRV+VEW F E++  W F + K QQK LLSPV  QYRV+  L+N+H+CLNGGNQIS YF ++PPT E+YL +
Sbjct:  334 MSHCRVTVEWGFKEMTSKWAFVDMKSQQKYLLSPVGKQYRVATLLSNMHSCLNGGNQISQYFNLQPPTLEEYLKV 408
[Close]
BLAST of mRNA_F-serratus_M_contig1495.3407.1 vs. uniprot
Match: A0A6H5JR24_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR24_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.950e-24
Identity = 44/75 (58.67%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    1 MSACRVSVEWAFGEVSRLWTFCNYKHQQKCLLSPVATQYRVSVFLTNLHTCLNGGNQISDYFGMKPPTPEQYLGI 225
            MS CRV+VEW F E++  W F + K QQK LLSPVA QYRV+  L+N H+C+NGGN+IS YFG+ PPT E+Y+ +
Sbjct:  201 MSHCRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 275
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1495.3407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5I2_9PHAE1.700e-2861.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6F4_9PHAE2.710e-2658.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLS3_9PHAE4.150e-2662.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024T893_9STRA6.060e-2660.00DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JS57_9PHAE7.090e-2662.67DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
A0A6H5JM46_9PHAE1.980e-2561.33DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KVK0_9PHAE3.160e-2558.67DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KY46_9PHAE7.830e-2558.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KH29_9PHAE1.220e-2460.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JR24_9PHAE1.950e-2458.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1495contigF-serratus_M_contig1495:50252..50479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue6e-19
Seed eggNOG ortholog2880.D7G105
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2AWDH@1,2RZYI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size228
Cds size228
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929473.6347435-CDS-F-serratus_M_contig1495:50251..504791622929473.6347435-CDS-F-serratus_M_contig1495:50251..50479Fucus serratus maleCDSF-serratus_M_contig1495 50252..50479 -
1690962869.4983892-CDS-F-serratus_M_contig1495:50251..504791690962869.4983892-CDS-F-serratus_M_contig1495:50251..50479Fucus serratus maleCDSF-serratus_M_contig1495 50252..50479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1495.3407.1prot_F-serratus_M_contig1495.3407.1Fucus serratus malepolypeptideF-serratus_M_contig1495 50252..50479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1495.3407.1

>prot_F-serratus_M_contig1495.3407.1 ID=prot_F-serratus_M_contig1495.3407.1|Name=mRNA_F-serratus_M_contig1495.3407.1|organism=Fucus serratus male|type=polypeptide|length=76bp
MSACRVSVEWAFGEVSRLWTFCNYKHQQKCLLSPVATQYRVSVFLTNLHT
CLNGGNQISDYFGMKPPTPEQYLGI*
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mRNA from alignment at F-serratus_M_contig1495:50252..50479-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1495.3407.1 ID=mRNA_F-serratus_M_contig1495.3407.1|Name=mRNA_F-serratus_M_contig1495.3407.1|organism=Fucus serratus male|type=mRNA|length=228bp|location=Sequence derived from alignment at F-serratus_M_contig1495:50252..50479- (Fucus serratus male)
ATGAGCGCTTGCCGAGTGTCCGTCGAGTGGGCCTTCGGAGAGGTATCACG
TTTGTGGACTTTCTGCAACTATAAGCACCAGCAAAAGTGCCTTCTCAGCC
CAGTAGCTACCCAGTACCGCGTCTCCGTATTCCTCACTAATCTCCATACA
TGCCTGAACGGGGGTAATCAGATTTCCGATTACTTTGGCATGAAACCGCC
GACGCCCGAGCAGTACTTGGGAATTTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1495:50252..50479-

>mRNA_F-serratus_M_contig1495.3407.1 ID=mRNA_F-serratus_M_contig1495.3407.1|Name=mRNA_F-serratus_M_contig1495.3407.1|organism=Fucus serratus male|type=CDS|length=456bp|location=Sequence derived from alignment at F-serratus_M_contig1495:50252..50479- (Fucus serratus male)
ATGAGCGCTTGCCGAGTGTCCGTCGAGTGGGCCTTCGGAGAGGTATCACG
TTTGTGGACTTTCTGCAACTATAAGCACCAGCAAAAGTGCCTTCTCAGCC
CAGTAGCTACCCAGTACCGCGTCTCCGTATTCCTCACTAATCTCCATACA
TGCCTGAACGGGGGTAATCAGATTTCCGATTACTTTGGCATGAAACCGCC
GACGCCCGAGCAGTACTTGGGAATTTAGATGAGCGCTTGCCGAGTGTCCG
TCGAGTGGGCCTTCGGAGAGGTATCACGTTTGTGGACTTTCTGCAACTAT
AAGCACCAGCAAAAGTGCCTTCTCAGCCCAGTAGCTACCCAGTACCGCGT
CTCCGTATTCCTCACTAATCTCCATACATGCCTGAACGGGGGTAATCAGA
TTTCCGATTACTTTGGCATGAAACCGCCGACGCCCGAGCAGTACTTGGGA
ATTTAG
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