mRNA_F-serratus_M_contig1491.3381.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1491.3381.1
Unique NamemRNA_F-serratus_M_contig1491.3381.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1491.3381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1491contigF-serratus_M_contig1491:178484..179117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size613
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1491.3381.1prot_F-serratus_M_contig1491.3381.1Fucus serratus malepolypeptideF-serratus_M_contig1491 178490..178864 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929468.7382107-UTR-F-serratus_M_contig1491:178483..1784891622929468.7382107-UTR-F-serratus_M_contig1491:178483..178489Fucus serratus maleUTRF-serratus_M_contig1491 178484..178489 +
1690962867.0563006-UTR-F-serratus_M_contig1491:178483..1784891690962867.0563006-UTR-F-serratus_M_contig1491:178483..178489Fucus serratus maleUTRF-serratus_M_contig1491 178484..178489 +
1622929468.7901602-UTR-F-serratus_M_contig1491:178864..1791171622929468.7901602-UTR-F-serratus_M_contig1491:178864..179117Fucus serratus maleUTRF-serratus_M_contig1491 178865..179117 +
1690962867.0913298-UTR-F-serratus_M_contig1491:178864..1791171690962867.0913298-UTR-F-serratus_M_contig1491:178864..179117Fucus serratus maleUTRF-serratus_M_contig1491 178865..179117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929468.760349-CDS-F-serratus_M_contig1491:178489..1787971622929468.760349-CDS-F-serratus_M_contig1491:178489..178797Fucus serratus maleCDSF-serratus_M_contig1491 178490..178797 +
1690962867.0665832-CDS-F-serratus_M_contig1491:178489..1787971690962867.0665832-CDS-F-serratus_M_contig1491:178489..178797Fucus serratus maleCDSF-serratus_M_contig1491 178490..178797 +
1622929468.7755399-CDS-F-serratus_M_contig1491:178818..1788641622929468.7755399-CDS-F-serratus_M_contig1491:178818..178864Fucus serratus maleCDSF-serratus_M_contig1491 178819..178864 +
1690962867.0805714-CDS-F-serratus_M_contig1491:178818..1788641690962867.0805714-CDS-F-serratus_M_contig1491:178818..178864Fucus serratus maleCDSF-serratus_M_contig1491 178819..178864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1491.3381.1

>prot_F-serratus_M_contig1491.3381.1 ID=prot_F-serratus_M_contig1491.3381.1|Name=mRNA_F-serratus_M_contig1491.3381.1|organism=Fucus serratus male|type=polypeptide|length=118bp
MYAVANPVRGHKEVQRSTGHIMVTTRYSNQQGSKSRQKVMQLYKQWHRPN
KTVHQTSLFHIESNLDRLGLLSPTHDQRSQQKTGRITLQPVLINKIPSVL
IRNFSITFFLIHKIGPQ*
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mRNA from alignment at F-serratus_M_contig1491:178484..179117+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1491.3381.1 ID=mRNA_F-serratus_M_contig1491.3381.1|Name=mRNA_F-serratus_M_contig1491.3381.1|organism=Fucus serratus male|type=mRNA|length=634bp|location=Sequence derived from alignment at F-serratus_M_contig1491:178484..179117+ (Fucus serratus male)
CTAGTAATGTACGCGGTTGCCAATCCGGTACGTGGTCACAAAGAGGTACA
AAGGTCAACGGGGCACATCATGGTGACAACCCGCTACTCAAACCAACAGG
GATCCAAATCGCGACAAAAAGTTATGCAACTCTACAAGCAATGGCACCGA
CCAAACAAAACGGTTCATCAAACATCCTTATTCCATATCGAGAGCAACCT
CGATCGACTCGGATTGTTATCGCCTACCCACGACCAGCGTTCTCAGCAAA
AAACCGGAAGAATTACGCTCCAACCAGTTTTGATCAACAAAATTCCAAGT
GTTCTCATCAGAAATTTTCTTGTCAGAAAAAAAAGTTTTTCGATAACGTT
TTTTCTGATCCATAAGATCGGGCCTCAGTAGCCAATAATAGTGGGTGTGG
GAAAGAGAGGCGCATATTAATTGGTCCATGGCAACCTGCTAAGAAGGCAG
CACTCGTTCGGAACTACCTTGAGATTTACTGGCCTGGTGCCGTCTTGGCA
GTGAACAACGCCATCGGCACGCAATTGCGTGACCCGATAAGCTCGGGACT
GACCCGATAACGTTTGGCAGTTTTAAATAAATAAATAGACGCCGCCGAAC
TCGGGGGAATCCAGTAAGTAAGGACTAAAATCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1491:178484..179117+

>mRNA_F-serratus_M_contig1491.3381.1 ID=mRNA_F-serratus_M_contig1491.3381.1|Name=mRNA_F-serratus_M_contig1491.3381.1|organism=Fucus serratus male|type=CDS|length=708bp|location=Sequence derived from alignment at F-serratus_M_contig1491:178484..179117+ (Fucus serratus male)
ATGTACGCGGTTGCCAATCCGGTACGTGGTCACAAAGAGGTACAAAGGTC
AACGGGGCACATCATGGTGACAACCCGCTACTCAAACCAACAGGGATCCA
AATCGCGACAAAAAGTTATGCAACTCTACAAGCAATGGCACCGACCAAAC
AAAACGGTTCATCAAACATCCTTATTCCATATCGAGAGCAACCTCGATCG
ACTCGGATTGTTATCGCCTACCCACGACCAGCGTTCTCAGCAAAAAACCG
GAAGAATTACGCTCCAACCAGTTTTGATCAACAAAATTCCAAGTGTTCTC
ATCAGAAAATGTACGCGGTTGCCAATCCGGTACGTGGTCACAAAGAGGTA
CAAAGGTCAACGGGGCACATCATGGTGACAACCCGCTACTCAAACCAACA
GGGATCCAAATCGCGACAAAAAGTTATGCAACTCTACAAGCAATGGCACC
GACCAAACAAAACGGTTCATCAAACATCCTTATTCCATATCGAGAGCAAC
CTCGATCGACTCGGATTGTTATCGCCTACCCACGACCAGCGTTCTCAGCA
AAAAACCGGAAGAATTACGCTCCAACCAGTTTTGATCAACAAAATTCCAA
GTGTTCTCATCAGAAATTTTTCGATAACGTTTTTTCTGATCCATAAGATC
GGGCCTCAGTAGTTTTTCGATAACGTTTTTTCTGATCCATAAGATCGGGC
CTCAGTAG
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