mRNA_F-serratus_M_contig1457.3231.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1457.3231.1
Unique NamemRNA_F-serratus_M_contig1457.3231.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1457.3231.1 vs. uniprot
Match: D8LCQ8_ECTSI (Gamma carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCQ8_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 2.480e-119
Identity = 197/248 (79.44%), Postives = 213/248 (85.89%), Query Frame = 1 
Query:    1 VLPSTRSVAYKGKQPSTEAASFVAPNASVIGNVKVGAGSSLWYGSVVRGDVNHVVIGEGT*IGDSAVVHVAGLAGKMPSVIGNNVVIGPRATIHACTLEDECMVCTGATVMDXXXXXXXXXXXXXXXXXXDTDVPAGQLWAGTPAVYVRDLSEDEVVSITNMAIDNQEMSLVHASECAKGPLEIELDLRKWNEKASRDPTYVFQVPPEGDDNLAYNDVEGQGVPGRVFNTNLRSPDVEPFEREYAGDV 744
            +L STRSV +KGK PST  ASFVAPNASVIG+VKVG G+SLWYGSVVRGDVNHVVIG G+ +GDSAVVHVAGLAG  P+++GNNVVIGPRATIHACTL+D+CMV  GATVMDXXXXXXXXXXXXXXXXXX   VP GQLWAGTPAVYVRD+SE E  SI   A + Q +SL HASEC KGPLEIELD RKW+EKASRDPTYVFQVP EGDDNLAYNDVEGQGVPGRVFNTNLRSPDVE     Y GD+
Sbjct:   36 LLASTRSVGHKGKVPSTAQASFVAPNASVIGDVKVGEGASLWYGSVVRGDVNHVVIGAGSSVGDSAVVHVAGLAGNKPTIVGNNVVIGPRATIHACTLKDDCMVGAGATVMDXXXXXXXXXXXXXXXXXXXXXVPTGQLWAGTPAVYVRDISELEAASIVTTAAETQALSLAHASECEKGPLEIELDERKWDEKASRDPTYVFQVPEEGDDNLAYNDVEGQGVPGRVFNTNLRSPDVEYEPPTYEGDM 283
[Close]
BLAST of mRNA_F-serratus_M_contig1457.3231.1 vs. uniprot
Match: A0A8K1CL43_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL43_PYTOL)

HSP 1 Score: 177 bits (449), Expect = 1.420e-51
Identity = 87/185 (47.03%), Postives = 124/185 (67.03%), Query Frame = 1 
Query:    7 PSTRSVAYKGKQPSTEAASFVAPNASVIGNVKVGAGSSLWYGSVVRGDVNHVVIGEGT*IGDSAVVHVAGLAGKMPSVIGNNVVIGPRATIHACTLEDECMVCTGATVMDXXXXXXXXXXXXXXXXXXDTDVPAGQLWAGTPAVYVRDLSEDEVVSITNMAIDNQEMSLVHASECAKGPLEIELD 561
            PSTR VA  G+ P+ E  +F+APNA+VIG+VK+G GSS+WYG+ VRGDVNH+ IGE T I D AVVHVA +   +P+ IG+NV +GP A IHACT++D C++ TGA V+D                  +  +P+GQLW+G PA ++RDL+ +E+  +   +++  E+S VHA+EC K   ++E D
Sbjct:   39 PSTRLVANTGRAPAIEKGAFIAPNAAVIGDVKIGKGSSVWYGATVRGDVNHITIGENTNIQDHAVVHVAKIHQDLPTKIGSNVTVGPSAIIHACTIQDHCIIGTGAQVLDGAVVEAQSIVTAGSIVTYNKKIPSGQLWSGVPARFLRDLTAEEIEFMKQCSLEYAELSQVHATECDKTFEQVEAD 223
[Close]
BLAST of mRNA_F-serratus_M_contig1457.3231.1 vs. uniprot
Match: A0A2D4C5C0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5C0_PYTIN)

HSP 1 Score: 176 bits (446), Expect = 4.000e-51
Identity = 106/188 (56.38%), Postives = 137/188 (72.87%), Query Frame = 1 
Query:    7 PSTRSVAYKGKQPSTEAASFVAPNASVIGNVKVGAGSSLWYGSVVRGDVNHVVIGEGT*IGDSAVVHVAGLAGKMPSVIGNNVVIGPRATIHACTLEDECMVCTGATVMDXXXXXXXXXXXXXXXXXXDTDVPAGQLWAGTPAVYVRDLSEDEVVSITNMAIDNQEMSLVHASECAKGPLEIELDLRK 570
            PSTR VA  G+ P+    +FVAPNASVIG+VK+G GSS+WYG+ VRGDVN + IGE T I D AVVHVA +   +P+ IG+NV IGP A IHACT+ D C++ TGA V+DXX   XXXXXXXXXXXXX   VP+GQLW+G PA Y+RDL+ +E+  +   +++  E+S VHA+EC K   E+E D ++
Sbjct:   39 PSTRCVANTGRAPTIAKGAFVAPNASVIGDVKIGKGSSVWYGATVRGDVNFITIGENTNIQDHAVVHVAKIHQDIPTKIGSNVTIGPSAIIHACTINDHCIIGTGAQVLDXXVVEXXXXXXXXXXXXXXKKVPSGQLWSGVPARYLRDLTAEEIEFMKQCSLEYAELSQVHATECGKTFEEVEADKQR 226
[Close]
BLAST of mRNA_F-serratus_M_contig1457.3231.1 vs. uniprot
Match: H3GWK8_PHYRM (Uncharacterized protein n=19 Tax=Peronosporaceae TaxID=4777 RepID=H3GWK8_PHYRM)

HSP 1 Score: 175 bits (443), Expect = 1.040e-50
Identity = 100/189 (52.91%), Postives = 130/189 (68.78%), Query Frame = 1 
Query:    7 PSTRSVAYKGKQPSTEAASFVAPNASVIGNVKVGAGSSLWYGSVVRGDVNHVVIGEGT*IGDSAVVHVAGLAGKMPSVIGNNVVIGPRATIHACTLEDECMVCTGATVMDXXXXXXXXXXXXXXXXXXDTDVPAGQLWAGTPAVYVRDLSEDEVVSITNMAIDNQEMSLVHASECAKGPLEIELDLRKW 573
            PSTR+V   G+ P  E   FVAPNASVIG+VKVG GSS+WY + VRGDVNH+ IGE T I D AVVHVA +   +P+ IGNNV +GP A +HACT++D C++ TGA V+D       XXXXXXXXXXX   VP+GQLW+G PA Y+RDL+ +E+  +   + +  +++  HA ECAK   E E D  ++
Sbjct:   36 PSTRAVKNLGRSPKFEEGVFVAPNASVIGDVKVGKGSSIWYNATVRGDVNHITIGENTNIQDQAVVHVAKIHKDIPTKIGNNVTVGPAAIVHACTIQDHCIIGTGAQVLDGAVVGAKXXXXXXXXXXXXXQVPSGQLWSGVPARYLRDLTAEEMQFMQQCSAEYMQLAEQHAEECAKSFEEYEADTERY 224
[Close]
BLAST of mRNA_F-serratus_M_contig1457.3231.1 vs. uniprot
Match: A0A7S1Z4W2_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z4W2_9STRA)

HSP 1 Score: 174 bits (441), Expect = 4.600e-50
Identity = 120/237 (50.63%), Postives = 155/237 (65.40%), Query Frame = 1 
Query:    1 VLPSTRSVAYKGKQPS-TEAASFVAPNASVIGNVKVGAGSSLWYGSVVRGDVNHVVIGEGT*IGDSAVVHVAGLAGKMPSVIGNNVVIGPRATIHACTLEDECMVCTGATVMDXXXXXXXXXXXXXXXXXXDTDVPAGQLWAGTPAVYVRDLSEDEVVSITNMAIDNQEMSLVHASECAKGPLEIELDLRKWNEKASRDPTYVFQVPPEGDDNLAYNDVEGQGVPGRVFNTNLRSPD 708
            ++PSTR VA  G  P+ +E+A+FVAP+ASVIGNV +G+ SS+WYG+ VRGDVNHVVIG+ + IGD AV+HVA + G  P+V                TL D C+V   A V+D XXXXXXXXXXXXXXXXX    P GQ WAG+PA  VR LS++E+ +I N A +  +++ +HA ECAK   ++  D  K+ +   RDP Y FQ  P G D    +DV GQG PGR+FNT L  P+
Sbjct:   40 LVPSTRFVAVDGVAPAVSESAAFVAPSASVIGNVSLGSKSSIWYGATVRGDVNHVVIGDNSSIGDRAVIHVAKIQGDSPTVXXXXXXXXXXXXXXXATLGDSCVVGASAQVLDGXXXXXXXXXXXXXXXXXXXXXPTGQYWAGSPAKMVRSLSDEELATIINSANETTQLASLHAGECAKDLAQLVADEEKYLDDLERDPEY-FQ--PTGVDE---DDVLGQGQPGRIFNTTLSHPE 270
[Close]
BLAST of mRNA_F-serratus_M_contig1457.3231.1 vs. uniprot
Match: A0A3R7HC37_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HC37_9STRA)

HSP 1 Score: 173 bits (439), Expect = 6.180e-50
Identity = 88/191 (46.07%), Postives = 123/191 (64.40%), Query Frame = 1 
Query:    1 VLPSTRSVAYKGKQPSTEAASFVAPNASVIGNVKVGAGSSLWYGSVVRGDVNHVVIGEGT*IGDSAVVHVAGLAGKMPSVIGNNVVIGPRATIHACTLEDECMVCTGATVMDXXXXXXXXXXXXXXXXXXDTDVPAGQLWAGTPAVYVRDLSEDEVVSITNMAIDNQEMSLVHASECAKGPLEIELDLRKW 573
            V PSTR+V   G+ P     +FVAPNASVIG+VKVG GSS+WY + VRGDVN++ IGE T I D AVVHVA +   +P+ IGNNV +GP A +HACT++D C++ TGA V+D                  +  VP+GQLW+G PA Y+RDL+ +E+  +   +++  +++  HA+ECAK   E E D  ++
Sbjct:   48 VNPSTRAVKNLGRSPQFAERTFVAPNASVIGDVKVGKGSSIWYNATVRGDVNYITIGENTNIQDQAVVHVAKIHKDIPTKIGNNVTVGPAAIVHACTIQDHCIIGTGAQVLDGAEVGAKSIITAGSIVTQNKKVPSGQLWSGVPARYLRDLTAEEMQFMQQCSVEYAQLAEQHATECAKSFEEYEADTERF 238
[Close]
BLAST of mRNA_F-serratus_M_contig1457.3231.1 vs. uniprot
Match: A0A484E3A7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3A7_BRELC)

HSP 1 Score: 171 bits (434), Expect = 5.750e-49
Identity = 85/185 (45.95%), Postives = 119/185 (64.32%), Query Frame = 1 
Query:    7 PSTRSVAYKGKQPSTEAASFVAPNASVIGNVKVGAGSSLWYGSVVRGDVNHVVIGEGT*IGDSAVVHVAGLAGKMPSVIGNNVVIGPRATIHACTLEDECMVCTGATVMDXXXXXXXXXXXXXXXXXXDTDVPAGQLWAGTPAVYVRDLSEDEVVSITNMAIDNQEMSLVHASECAKGPLEIELD 561
            PSTR++   G+ P      FVAPNASVIG+VKVG GSS+WY + VRGDVN+++IGE T I D AVVHVA +   +P++IGNNV +GP A +HACT+ D C++ TGA V+D                  +  +P+GQLW+G PA Y+RDL+ +E+  +   + +  +++  HA ECAK  +E E D
Sbjct:   68 PSTRAIKNLGRSPKFGDGVFVAPNASVIGDVKVGNGSSIWYNATVRGDVNYIIIGENTNIQDQAVVHVAKINKDIPTIIGNNVTVGPAAIVHACTIHDHCIIGTGAQVLDGAVIGAKSIVTAGSIVTYEKQIPSGQLWSGVPARYLRDLTIEEIQFMQQCSSEYSQLAEKHAQECAKSFVEYEAD 252
[Close]
BLAST of mRNA_F-serratus_M_contig1457.3231.1 vs. uniprot
Match: M4C3G6_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C3G6_HYAAE)

HSP 1 Score: 169 bits (428), Expect = 1.860e-48
Identity = 96/189 (50.79%), Postives = 127/189 (67.20%), Query Frame = 1 
Query:    7 PSTRSVAYKGKQPSTEAASFVAPNASVIGNVKVGAGSSLWYGSVVRGDVNHVVIGEGT*IGDSAVVHVAGLAGKMPSVIGNNVVIGPRATIHACTLEDECMVCTGATVMDXXXXXXXXXXXXXXXXXXDTDVPAGQLWAGTPAVYVRDLSEDEVVSITNMAIDNQEMSLVHASECAKGPLEIELDLRKW 573
            PSTR+V    + P+ E   FVAPNASVIG+VKVG GSS+WY + VRGDVNH+ IGE + I D AVVHVA +    P+ IGNNV +GP A +HACT++D C++ TGA VMD       XXXXXXXX   D  VP+GQLW+G PA Y+RDL+ +E+  +   + +  +++  +A ECAK   E E D  ++
Sbjct:   36 PSTRAVKNLRRAPTFEEGVFVAPNASVIGDVKVGKGSSIWYNATVRGDVNHITIGENSNIQDQAVVHVAKIHRDSPTKIGNNVTVGPAAIVHACTIQDHCIIGTGAQVMDGSVIGAKXXXXXXXXVTQDKQVPSGQLWSGVPARYLRDLTAEEMHFMQQCSAEYTQLAEQYAVECAKSFEEYEADTERF 224
[Close]
BLAST of mRNA_F-serratus_M_contig1457.3231.1 vs. uniprot
Match: A0A448ZKR1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKR1_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.250e-47
Identity = 98/238 (41.18%), Postives = 142/238 (59.66%), Query Frame = 1 
Query:    1 VLPSTRSVAYKGKQPSTEAAS-FVAPNASVIGNVKVGAGSSLWYGSVVRGDVNHVVIGEGT*IGDSAVVHVAGLAGKMPSVIGNNVVIGPRATIHACTLEDECMVCTGATVMDXXXXXXXXXXXXXXXXXXDTDVPAGQLWAGTPAVYVRDLSEDEVVSITNMAIDNQEMSLVHASECAKGPLE-IELDLRKWNEKASRDPTYVFQVPPEGDDNLAYNDVEGQGVPGRVFNTNLRSPD 708
            ++PS+R V+  G  P+   A+ F+AP+ASVIGNV +G  SS+WYG+ VRGDVN+V IG  T IGD AVVHVA + G  P+VIG+NV IG  A +HACT+ED  +V   A VMD                   T +P+G+LW+G PA   R L+ +E+  I+  A D  E++ +HA E +K   + +E +  + + K  ++  +   +P         +DV GQGVPGR+FN+ L +P+
Sbjct:   39 LVPSSRIVSVDGVAPALPGANNFIAPSASVIGNVTIGEHSSVWYGATVRGDVNNVKIGTKTSIGDRAVVHVAKIQGDHPTVIGDNVTIGAGAIVHACTIEDLVVVGESAQVMDGATVGTNSVVAAASIVTAGTKIPSGELWSGAPAKKERALTSEEIAEISESAHDTLELAYLHAVENSKDYKQLVEEEEDRLDRKLRKNAWFDPNIPDP-------DDVLGQGVPGRIFNSTLTNPE 269
[Close]
BLAST of mRNA_F-serratus_M_contig1457.3231.1 vs. uniprot
Match: A0A0N7L486_PLAHL (Gamma carbonic dehydratase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L486_PLAHL)

HSP 1 Score: 164 bits (415), Expect = 1.660e-46
Identity = 103/189 (54.50%), Postives = 134/189 (70.90%), Query Frame = 1 
Query:    7 PSTRSVAYKGKQPSTEAASFVAPNASVIGNVKVGAGSSLWYGSVVRGDVNHVVIGEGT*IGDSAVVHVAGLAGKMPSVIGNNVVIGPRATIHACTLEDECMVCTGATVMDXXXXXXXXXXXXXXXXXXDTDVPAGQLWAGTPAVYVRDLSEDEVVSITNMAIDNQEMSLVHASECAKGPLEIELDLRKW 573
            PSTR+V   G+ P  E   FVAPNASVIG+VKVG GSS+WY + VRGDVN++ IGE T I D AVVHVA +   +P+ IGNNV +GP A +HACT++D C++ TGA    XXXXXXXXXXXXXXXXXX   VP+GQLW+G PA Y+RDL+ +E+  +   + +  +++  HA ECAK   + E D  ++
Sbjct:   36 PSTRAVKNLGRSPEFEDGVFVAPNASVIGDVKVGKGSSIWYNATVRGDVNYITIGENTNIQDQAVVHVAKIYKDIPTKIGNNVTVGPAAILHACTIQDHCIIGTGALXXXXXXXXXXXXXXXXXXXXXXKQVPSGQLWSGVPARYLRDLTTEEIQFMQQCSSEYAQLAEKHALECAKSFEDYEADTERY 224
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1457.3231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCQ8_ECTSI2.480e-11979.44Gamma carbonic anhydrase n=2 Tax=Ectocarpus TaxID=... [more]
A0A8K1CL43_PYTOL1.420e-5147.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C5C0_PYTIN4.000e-5156.38Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
H3GWK8_PHYRM1.040e-5052.91Uncharacterized protein n=19 Tax=Peronosporaceae T... [more]
A0A7S1Z4W2_9STRA4.600e-5050.63Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A3R7HC37_9STRA6.180e-5046.07Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A484E3A7_BRELC5.750e-4945.95Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
M4C3G6_HYAAE1.860e-4850.79Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A448ZKR1_9STRA1.250e-4741.18Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A0N7L486_PLAHL1.660e-4654.50Gamma carbonic dehydratase n=1 Tax=Plasmopara hals... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1457contigF-serratus_M_contig1457:58551..65356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.2
Seed ortholog evalue1.4e-60
Seed eggNOG ortholog2880.D8LCQ8
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004089,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009853,GO:0009900,GO:0009901,GO:0009908,GO:0009987,GO:0010033,GO:0016020,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0019222,GO:0019866,GO:0022414,GO:0022607,GO:0030964,GO:0031090,GO:0031323,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0042221,GO:0042802,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048608,GO:0048609,GO:0048653,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051259,GO:0051260,GO:0061458,GO:0065003,GO:0065007,GO:0070206,GO:0070207,GO:0070469,GO:0071840,GO:0090567,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0099402,GO:1902494,GO:1990204,GO:2000377
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGs2QTES@2759,COG0663@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size744
Cds size516
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929441.509833-CDS-F-serratus_M_contig1457:58550..586951622929441.509833-CDS-F-serratus_M_contig1457:58550..58695Fucus serratus maleCDSF-serratus_M_contig1457 58551..58695 -
1690962853.7898002-CDS-F-serratus_M_contig1457:58550..586951690962853.7898002-CDS-F-serratus_M_contig1457:58550..58695Fucus serratus maleCDSF-serratus_M_contig1457 58551..58695 -
1622929441.526258-CDS-F-serratus_M_contig1457:61539..616371622929441.526258-CDS-F-serratus_M_contig1457:61539..61637Fucus serratus maleCDSF-serratus_M_contig1457 61540..61637 -
1690962853.808597-CDS-F-serratus_M_contig1457:61539..616371690962853.808597-CDS-F-serratus_M_contig1457:61539..61637Fucus serratus maleCDSF-serratus_M_contig1457 61540..61637 -
1622929441.5369995-CDS-F-serratus_M_contig1457:62428..625151622929441.5369995-CDS-F-serratus_M_contig1457:62428..62515Fucus serratus maleCDSF-serratus_M_contig1457 62429..62515 -
1690962853.8170762-CDS-F-serratus_M_contig1457:62428..625151690962853.8170762-CDS-F-serratus_M_contig1457:62428..62515Fucus serratus maleCDSF-serratus_M_contig1457 62429..62515 -
1622929441.5502384-CDS-F-serratus_M_contig1457:63386..635381622929441.5502384-CDS-F-serratus_M_contig1457:63386..63538Fucus serratus maleCDSF-serratus_M_contig1457 63387..63538 -
1690962853.8269532-CDS-F-serratus_M_contig1457:63386..635381690962853.8269532-CDS-F-serratus_M_contig1457:63386..63538Fucus serratus maleCDSF-serratus_M_contig1457 63387..63538 -
1622929441.5637765-CDS-F-serratus_M_contig1457:64120..641541622929441.5637765-CDS-F-serratus_M_contig1457:64120..64154Fucus serratus maleCDSF-serratus_M_contig1457 64121..64154 -
1690962853.8366768-CDS-F-serratus_M_contig1457:64120..641541690962853.8366768-CDS-F-serratus_M_contig1457:64120..64154Fucus serratus maleCDSF-serratus_M_contig1457 64121..64154 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929441.576013-UTR-F-serratus_M_contig1457:64154..642801622929441.576013-UTR-F-serratus_M_contig1457:64154..64280Fucus serratus maleUTRF-serratus_M_contig1457 64155..64280 -
1690962853.8461692-UTR-F-serratus_M_contig1457:64154..642801690962853.8461692-UTR-F-serratus_M_contig1457:64154..64280Fucus serratus maleUTRF-serratus_M_contig1457 64155..64280 -
1622929441.58972-UTR-F-serratus_M_contig1457:65254..653561622929441.58972-UTR-F-serratus_M_contig1457:65254..65356Fucus serratus maleUTRF-serratus_M_contig1457 65255..65356 -
1690962853.8555703-UTR-F-serratus_M_contig1457:65254..653561690962853.8555703-UTR-F-serratus_M_contig1457:65254..65356Fucus serratus maleUTRF-serratus_M_contig1457 65255..65356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1457.3231.1prot_F-serratus_M_contig1457.3231.1Fucus serratus malepolypeptideF-serratus_M_contig1457 58551..64154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1457.3231.1

>prot_F-serratus_M_contig1457.3231.1 ID=prot_F-serratus_M_contig1457.3231.1|Name=mRNA_F-serratus_M_contig1457.3231.1|organism=Fucus serratus male|type=polypeptide|length=172bp
MPSVIGNNVVIGPRATIHACTLEDECMVCTGATVMDGAKVSSGAMVAPGA
TVSPDTDVPAGQLWAGTPAVYVRDLSEDEVVSITNMAIDNQEMSLVHASE
CAKGPLEIELDLRKWNEKASRDPTYVFQVPPEGDDNLAYNDVEGQGVPGR
VFNTNLRSPDVEPFEREYAGDV
back to top

mRNA from alignment at F-serratus_M_contig1457:58551..65356-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1457.3231.1 ID=mRNA_F-serratus_M_contig1457.3231.1|Name=mRNA_F-serratus_M_contig1457.3231.1|organism=Fucus serratus male|type=mRNA|length=6806bp|location=Sequence derived from alignment at F-serratus_M_contig1457:58551..65356- (Fucus serratus male)
GTGCTACCGTCCACCAGGAGCGTGGCTTACAAGGGAAAACAGCCCTCCAC
CGAGGCAGCTTCGTTTGTGGCCCCCAATGCATCAGTCATCGGCAACGTCA
AGGTGTGTCCATGGATTCAGGTAGTGCCGCGCCCCAACTCGATGGGTAGA
TAGAAGCAACGGTGGCAAAATGGGGGGGGCAGGCAAAAATATCTATTAAT
TTGTATCATTTTTTGTCGATTCCCCGAGGGGCGGGCGGAGGGTCTGCTTT
CATTTTTTTCAGTCTAAAATTAAGTCATTTCCAGTTTTCCAGGCGGAAGC
TGCTGGTACGTTTTCCCTGAAATCCAAATTGGAGTCATTGACAGCCCTGA
CCATGGGTTTCCACGGGCGCTTTACGTGCAACAGTTTCTATACTTTAACG
TAATGCTTTGGTCAACTCAACGGAACCTTAAAGCTAAAGTACAATTATAG
CGCTGGCCTCCATTTTGTTTTCATCTCCCTTGTAGCCGATGGTCCCTCAA
TGTTACCATCCTGCCTGTGGTCACTAAAAATCTTCCCATCTCTCCCCGGT
TCACGCCTTAAGGTTTTTTATCGAGATACAAGTTCAGCACTCTTACAACT
CCTCAAACCAATAATATCAATAGATGAATTTTACTTACATTACTCGCGTT
CCCACGCTTTCCGTTACAGAAGAAAGAACACAAATCCTACTTTGGTAAAA
ATCGGACTCACGACTTCCGCACTAGCAGGTGTGCAGGTTACCTACTAGGC
CACTCGGGCGATGAGTGCATCCTAATACCCCACATCGCACGTTCCCTTTT
GGCGCCTCGACTCCCTCGTCCTCTGTAACATAAGTCACGAATCAGAAACG
AATGACTACCGAGCCATAACTCTTCGTTTCCCGCTCCGCAAATGCCAAGT
GCATCCGAATCCCGTCTCTCCTTATCTCCCAAGTTTCTTTGCCACGTTCG
AAATTCCACATCCCTGAGGTCACAACCGCCATCTGACAACCCCTCTCATG
GCTCGCGCTTGTTCCCCATCCCTATCTTCCTTCCGGTTGCCCGCACCGCT
CATCCCACGTTCCATATCCGTGCCAGGTGGGCGCTGGGTCGTCACTATGG
TATGGTTCCGTGGTACGAGGAGACGTGAACCATGTGGTGATCGGAGAGGG
AACCTGAATCGGAGATTCTGCGGTAGTGCACGTCGCCGGACTGGCGGGGA
AGATGCCTTCCGTCATCGGCAACAACGTTGTCATCGGTACGCACTCTTCT
TCCCTCAACAGTATCTGTACTTTTTCCTTAGCGTTATTCAATGCTTTGTT
TTCTATCTATAATTTTGACACTTTTCCATAACGTTGAGCTTCTCTCTTTG
TATTTTGATATTATATATTAATAGTACAACAATCTCATCGTGATTCGGTA
CGTTATTACTCTATATCTGGTCATATTTGATGCGTTCTTCGAAGAACGTG
ATTCGGTACAGCGACGTGCTCTCCTTGTCCACCGCCGTTTTTGTGTTGTC
TTTAACCAATTTTACTACAGTTTCCACGTTTGTTTGTTTTTTTGTACGGT
ACTTTTCGAAATAGGATCGTTTTGCTTTTTTGCGAAAATCTGCCTACGCG
GTGTTTTGGGGTTTTCGCTCATCAGAGCATCATCGCTCTATTGTACTGTA
CCGCTCGATCGACGATCGAGAGGCTACTAACTACTTCAGATTTTACTATC
GTTGACTTTGCTGTCAACGTTATTGTCGACTTTGCTTTCAACCTTTCGTC
AACCTTCTCACTACTGGTAACGTTCTGTCAACTATGATGTCAATATTTGT
TAAACCGTGCTGCGAAAGGTCCACGGGCTACCATCCACGCATGCACGCTG
GAGGATGAGTGCATGGTGTGCACCGGTGCGACGGTGATGGACGGAGCTAA
GGTGTCGAGCGGGGCTATGGTCGCACCAGGCGCCACCGTATCTCCCGACA
CTGACGTGCCCGCCGGACAGGTGAGACTATGGAAGATGAGATGTCAAAAG
CGGGACGGAAAGAGATGGGATGGGTTTGGTATGTGGGATGAGGCGTTTGC
GCCTTAACGCTACCGAGATATTTTCAGGTTTTTATTTTGGTTGCTTTTGA
TTCTAAAATCAAGTAGCTCTTGTAAGTTTACCGCCGAGGTTTTGCTCTGA
AAGTTCTGCTGCCCACGGTGCGGTGCATTTGATGTTGAGCGTGTACGAAA
ACTCATGTGGGGCTAAGGCCGAGATGGTGCAGAATACGGTAGAATTTGAT
AGTACGAAATGGCATGGGATTGGATGGGACAATATGGAACCGGACCCGAC
CCGGCTGAGTTTGCGGCGGGGTTCCAATGCAATATTGCGTGTTTTTTTCC
ATGTATGACATACCTTTCTATTTTAGTGTACCTTTTGTATCCTGAAATAA
GGTACAGTATACTAATGAGCAGGAGTTGTGTGGAACGTTTGCCTTGGTTT
TTCTTCAATTTATTATATACCTTTTATTTTAGTGTACCTTTTATATCCTG
AAATAAGGTACTGTATACAAATGAGCAGGAGTAGTGTGGAACGTTTGCCC
TGGGTTTTTTTTTGCTCGATACTTGTAAGAGTCTCGGTTCCAACCTACCA
CTCCATACTGTAGATACGTCCATACATACATACATACATACAACAGCTGC
AGTACAACTAAAGGTGTTTTTCCTCAACCGCGGCAACGTTACAAAGCTAG
CAACATTACGAAGCTGGTTGGTCCATATATCCCATTCATCCCATTTATTC
CCGGGAGTGTTAAAGGAACCCTCGACTCGACGTCCCCGATCCCCGTCCTG
CTGTCGCATACTGTACTTGTCTCGTATACTGCTGTTTGTAGCTTTGGGCT
GGAACTCCAGCGGTGTACGTACGGGATCTCTCCGAAGACGAGGTGGTTTC
CATCACCAACATGGCGATTGACAACCAGGTACAGTACCTCGACATTTTCT
TGAGTATTATTATTGATTATTTTTCCCTTTTGTTATTTTTCCTAGTTTTT
TTTTTTAATCTTGTTCTTTTCGTTTTATGCACTTTTGTCTTCTTGCCTGC
TATACTTTCCTTTTCCGCCTTTTTCTATTTCTATTTTCCTTTTTTTGTCC
TTTTTTTTTAAATCACACCCCCGGGCATGTTTCGCCCTCAGAGTTCACTC
TACTTGACTTGGATTTACTTTAAAACGGCAAAGATGTGATTCTATTATGC
CGATAAAACTACTCGGCACTAGAATGCACACTATTATAATAGTTCTAGGC
CTAAGCCTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTC
TTCCCTTTTATTCTGGACGTCAAGCTTGTGGACGTACCAGCCGGGGTCGC
ACAGGATTTCTCAACCACCTGCCTTCTGCGGTGCTTGTCTTAATTTTGTC
GCGAAATTGATTCAGCCATCCCTTTCCCTCGTCGACCGTGAAGTATACCG
AATTTTGTGTACCCACGAATTGGAGCCTAATCGTTCTCCACTTTTTGGGC
ATTTTTTAAAAGAGACTAATTTATGTAATGCCATACCATACCATACCATA
CCATATATGTTATCCTTAGCGTGGCTCTCGCCTCCGTGATACCGTACATT
TCCCCATTGCACTCTAACATGGTATTAATAACGTACTCTACTGTTCGTGA
CGTTTCCGCCCATGGATCGATTTTTATCCGTCACACTCTATCTTTTTTTA
ATCCTCGGGGGGGATCCAGGAAATGTCGCTAGTGCACGCCTCGGAGTGCG
CCAAGGGTCCCCTGGAGATCGAGCTGGACTTGAGGAAGTGGAACGAGAAG
GCCAGCCGTGACCCTACGTGAGTGCACGCTCGATCGTATGTATATATGGT
CACACATACAGTATAGCAAGACTAAGAGTATGGATCAACCGGGTATGGTT
GCCAACCCTCCTCGTGGTCAGCTGAACAGGGAAAATAAATGTTTCCCTGT
CCGCGTTCGCGCCGCCTGAGAAATTGGTCTCGCGAGATGGGTTCGGCAGT
CCCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAAGCCGAATCTGGTTC
TTACTTAAGGGATTCCTCCCGAGTTCAGCGGCGGCGTCCATCTATTTATT
TAAAAACCGCCATATGCCATCGGGTCAGTCCCGAGTTTATCGGGTCACGC
AATTGCGTACTGGTGGCCTTCACTGCCAAGAGTCCGCCGGCACAGAGCCA
GTAAACCTCAAGGTAGTTCCGAACGAGTGTTGCTTTGAACCGGAAACCCA
TGGACTATGACCGATTAATATGCGCCTCTCTTTACCCACACCCACTATTG
GTATGAAGTAGTCATAGCATGTTGAGAGTTCAGTACCGGCTCGCATATAC
GATTAATATCTTAACACCTCTATGAATAGTATGTATGTATGTATAGTCAC
ACATATAGCAAGAGTTTGGATCAACCTGGTAAGGTTGCCAATCCTGCTTG
TGGTCAGCTGAACAGGGAAAAAGAATATTCCCCTGTCCGCGTTCGTGCCT
GAGAATTTGGTCTCGCGAGACGGTTTCGGCAGTCCCGTCCCGCGTCAGCC
TGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCT
CCCGAGTATAGTATGAATAGACGATGCATTCAAAATTGACTGTATATTAT
ATACTGTACATATTATGTGTACTTTTCTTCGACAAACATAACTCGTAGCC
TGTGTTGTTACGGAGACGTGAAAGTACTTACTATTAATAGTATTATTTAA
AAGAAATACCTGAAAGCATCTAGATCTTCTGAGCTCTAGTGTCCGATTTT
TCACACCTCCCATTGTATATATATATACATCGCCGGTACTTTCAACATGC
CCACTTCATACCAACAATGGTATAGTGGGTGTGGGAAAGAGAGGCGTATA
TTAATTGGTCATAGTCCATAGTGACCTGCTAAGGCAGCACTCGTTCGGAA
CTACCTTGAGGTTTACTGGCCCAGTGCCGGCGAACTCTCGGCAGTGAACG
CCATCGGTACGCAATTGCGTGACCTGATAAACTCGGGACTGACCCGATGA
AGTATGGCGGTTTTATAAATGGACGCCGCCGCGGAACTCGGGAGGAATCC
CGTAAGTAAGCACCAGATTCAGTCTGAGTGTGGAAATGAGCAGGCTGACG
CGGGACGGGACGGCTAAACCCGTCTCGCGAGACCAAATTCTCAGGCACGC
ACGGGGACAGGGGAGTATTTATTTTCCCTGTTCAGCTGACCACGAGCAGG
ATTGGCAACCTTACCCGGTTGATCTATACTTTGCTATATGTGATGACCAT
ACATATGTACATACATATTAGAGAGTGCTTCGGGAGGAAAGCTGTTGCAT
ACACAGTAAAAGCTTGTTACTGTACATGTACAACTGAAGAGCTTTTGTAT
TTGCAGCCTATGATCTCACCTACCTGGTAAACGTTTTGATATTTTCCCCT
CTGACTAGGGGATGCTCTGAAGGTCTAAGCGTTCAGGTGTTTCTTTTAAA
CTCAAAATGTCTATCATAGATGCGTTCAGATTTTTCTTTAATAAAATATA
TCGCGATCACGAAGGACTGATTAAACATTTTCCCTGCTTCATCTTTTCCG
TAATTACTGAGAAGAACTATCGTATCTACATTACAGTATAGAATATAGTA
TATAGTATAGTATGTACAGGGTATTCATCAGCCTTTCCACGCACGGTGAA
ATCGAAACGGCTTTTTTTTTCTACTCCGGTACGAGTACCGTAATTATCCA
ATAAGCTTTCACTTGTGTGGGATGTAGCCAATCAAAAGGCGGCACAAGCG
GGAGTATCACTTGGGAGTTTGACGCGGGGTGTCTCTCGAGACTTTTTGAC
GGCATGGAAGGGACAAGGGAAGGGAAGGGAAGGGTTGATGGTTTATTGTT
AGTGTAGGACGCGTAAGTTTTTGGGGGCATCGTTGGTTTGGTTCGATCCA
TACGCGCATGTTGCCTCTTGGTCGACATCATATCCCTTATCCTTACCACA
TAATATCCCATATCGTACCCCGTCATTTTTGCTATATCGCACCATATTAT
AGGCTATATCGTACTTCAGTTGTCCTATCGTACCCGTATCGTGCCATACC
ATTTACCATATGCCATATCTGACGCATTCCTCTTTACAAAGTAAAACTAT
TCAGCTGCCTCGCCTCATGGGAGAAAATAAAGTTGTGTCCAAATTCCCGG
CGCCCCTATCTCCTGTATCCCTCCAAAATATGGAAAACCATAGTGTGGAG
AAAAAATGGGTCAAACCGCCCAAAGTTCACGGCGAGAAAAGCCGTGGCGT
TATTCATTTTACAGCATTGTAGTGTTGGTGATAGATACCCCCGCTGAAAA
ACATCGCGCAATTTTTTCTCTGACCTTGAAACCACGAGTGCAGCGTGACA
AGAAAAGTAATAAATAACACGCTCTCTATTTTTAGTACTATTAATACTAG
GACAAATATCCTTTGAAATTGACTATTTAAATGACAAGAAAAAAGTTATA
TTACACGCTCTCTATTTAGTACTACTAGGACAGTTACCCTTTGAAATTGA
TTATAGTGAAGAGAGCCTTATATAAATATTTTTGAATAACTCTTAAAAGA
CAAAATTGACGTGTCTCGAATGCATTTGCACTGTGCTCTTCTGTGTGCTT
GGTGGGGTCAGCTACGTGTTTCAGGTGCCTCCCGAGGGCGACGACAACCT
CGCTTACAATGACGTCGAGGGGCAGGGTGTGCCCGGCAGGGTTTTCAACA
CCAATCTTCGCTCCCCCGACGTGGAGCCCTTCGAGCGTGAGTACGCAGGC
GACGTC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1457:58551..65356-

>mRNA_F-serratus_M_contig1457.3231.1 ID=mRNA_F-serratus_M_contig1457.3231.1|Name=mRNA_F-serratus_M_contig1457.3231.1|organism=Fucus serratus male|type=CDS|length=1032bp|location=Sequence derived from alignment at F-serratus_M_contig1457:58551..65356- (Fucus serratus male)
ATGCCTTCCGTCATCGGCAACAACGTTGTCATCGATGCCTTCCGTCATCG
GCAACAACGTTGTCATCGGTCCACGGGCTACCATCCACGCATGCACGCTG
GAGGATGAGTGCATGGTGTGCACCGGTGCGACGGTGATGGACGGAGCTAA
GGTGTCGAGCGGGGCTATGGTCGCACCAGGCGCCACCGTATCTCCCGACA
CTGACGTGCCCGCCGGACAGGTCCACGGGCTACCATCCACGCATGCACGC
TGGAGGATGAGTGCATGGTGTGCACCGGTGCGACGGTGATGGACGGAGCT
AAGGTGTCGAGCGGGGCTATGGTCGCACCAGGCGCCACCGTATCTCCCGA
CACTGACGTGCCCGCCGGACAGCTTTGGGCTGGAACTCCAGCGGTGTACG
TACGGGATCTCTCCGAAGACGAGGTGGTTTCCATCACCAACATGGCGATT
GACAACCAGCTTTGGGCTGGAACTCCAGCGGTGTACGTACGGGATCTCTC
CGAAGACGAGGTGGTTTCCATCACCAACATGGCGATTGACAACCAGGAAA
TGTCGCTAGTGCACGCCTCGGAGTGCGCCAAGGGTCCCCTGGAGATCGAG
CTGGACTTGAGGAAGTGGAACGAGAAGGCCAGCCGTGACCCTACGAAATG
TCGCTAGTGCACGCCTCGGAGTGCGCCAAGGGTCCCCTGGAGATCGAGCT
GGACTTGAGGAAGTGGAACGAGAAGGCCAGCCGTGACCCTACCTACGTGT
TTCAGGTGCCTCCCGAGGGCGACGACAACCTCGCTTACAATGACGTCGAG
GGGCAGGGTGTGCCCGGCAGGGTTTTCAACACCAATCTTCGCTCCCCCGA
CGTGGAGCCCTTCGAGCGTGAGTACGCAGGCGACGTCCTACGTGTTTCAG
GTGCCTCCCGAGGGCGACGACAACCTCGCTTACAATGACGTCGAGGGGCA
GGGTGTGCCCGGCAGGGTTTTCAACACCAATCTTCGCTCCCCCGACGTGG
AGCCCTTCGAGCGTGAGTACGCAGGCGACGTC
back to top