mRNA_F-serratus_M_contig1455.3228.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1455.3228.1
Unique NamemRNA_F-serratus_M_contig1455.3228.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1455.3228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1455contigF-serratus_M_contig1455:46201..48240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size606
Cds size603
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1455.3228.1prot_F-serratus_M_contig1455.3228.1Fucus serratus malepolypeptideF-serratus_M_contig1455 46201..48239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929440.5548239-CDS-F-serratus_M_contig1455:46200..463851622929440.5548239-CDS-F-serratus_M_contig1455:46200..46385Fucus serratus maleCDSF-serratus_M_contig1455 46201..46385 +
1690962853.3137734-CDS-F-serratus_M_contig1455:46200..463851690962853.3137734-CDS-F-serratus_M_contig1455:46200..46385Fucus serratus maleCDSF-serratus_M_contig1455 46201..46385 +
1622929440.572004-CDS-F-serratus_M_contig1455:46768..471291622929440.572004-CDS-F-serratus_M_contig1455:46768..47129Fucus serratus maleCDSF-serratus_M_contig1455 46769..47129 +
1690962853.3240137-CDS-F-serratus_M_contig1455:46768..471291690962853.3240137-CDS-F-serratus_M_contig1455:46768..47129Fucus serratus maleCDSF-serratus_M_contig1455 46769..47129 +
1622929440.589562-CDS-F-serratus_M_contig1455:48182..482391622929440.589562-CDS-F-serratus_M_contig1455:48182..48239Fucus serratus maleCDSF-serratus_M_contig1455 48183..48239 +
1690962853.3332927-CDS-F-serratus_M_contig1455:48182..482391690962853.3332927-CDS-F-serratus_M_contig1455:48182..48239Fucus serratus maleCDSF-serratus_M_contig1455 48183..48239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1455.3228.1

>prot_F-serratus_M_contig1455.3228.1 ID=prot_F-serratus_M_contig1455.3228.1|Name=mRNA_F-serratus_M_contig1455.3228.1|organism=Fucus serratus male|type=polypeptide|length=201bp
GGEYPFHLVQVLIEERADIIFSSTQVAVDATADGGRTSVTVDGWLQEHKD
AGENVTEPFLNRVDKFYQENLHGTRPVVVYVTGNDMCPFLDELTAPRDSS
TAPPTSSRGPDLDMSTSVTGSDDLEAAALAVAAGKTPLVLMTLGWDASGS
PFHKECSLEVLELPEVMRWFVSHSQGDLLSPKIQVVPIGFGGTSLKNKLM
P
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mRNA from alignment at F-serratus_M_contig1455:46201..48240+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1455.3228.1 ID=mRNA_F-serratus_M_contig1455.3228.1|Name=mRNA_F-serratus_M_contig1455.3228.1|organism=Fucus serratus male|type=mRNA|length=2040bp|location=Sequence derived from alignment at F-serratus_M_contig1455:46201..48240+ (Fucus serratus male)
GGGGGAGAGTATCCTTTTCATCTGGTCCAAGTGTTGATCGAAGAGAGGGC
AGACATTATTTTTTCCTCCACCCAAGTGGCGGTAGATGCCACGGCAGATG
GGGGACGAACTTCAGTCACCGTGGACGGATGGTTACAGGAACATAAAGAC
GCCGGCGAAAATGTCACGGAGCCTTTCCTCAACCGGTGAGCCGACGATTC
ATGGAAACCCTTCCCTGGGACATGTGTTTGCGAGTTCTCTAGACCTCTAG
GCGGAAATTTGACTGCGATTGTCACGACTTTGTTCCTGCAGAGTTATGCA
TTACTACTACTAATAAAGCTAGCAAGTACAAAGTACAAAGTTTAAGGACG
AATGTGAATGTAATAGCCTAGCATGTAGACTACATTATTTGTTTCACCTG
GTATCTATCTGTCACCAAGTACTGTACTGTACTGTACTGTAATGTACTTC
GGTCAAAACCCACCTTGCATCGTTAGTCTTGTCACATGTTATGTTACCTT
ACCTTACCTTACCTTACCTTACCTTACCTTACCTTACCGTGTGGAAATCT
TACTGTATCGGATCGCAGCGTGGACAAGTTTTATCAAGAAAATCTCCATG
GGACACGACCTGTGGTGGTGTACGTTACCGGGAATGACATGTGCCCCTTC
CTGGACGAGTTGACCGCGCCTAGGGATAGCTCAACAGCACCGCCGACGTC
CTCCAGAGGTCCTGATCTGGATATGTCCACGTCGGTGACTGGATCCGACG
ACTTGGAAGCGGCAGCGTTGGCAGTTGCAGCTGGCAAGACGCCCCTCGTG
CTGATGACCCTCGGCTGGGATGCGAGCGGTTCCCCATTCCACAAGGAGTG
CTCCCTGGAGGTTTTGGAGCTGCCTGAGGTGATGCGCTGGTTCGTGTCCC
ACAGTCAAGGGGACCTGCTGAGTCCTAAGGTGCGGAAGGTGGTCGGCGTC
ATTCTCTAGTCTATTATCTAGTCTATTAATAGTTCTAGAACCGAACGAAG
GTGTCACTATTAATAGTATCACTAGTATAGCTCTAGAAGCTTTTACCTAG
TAATGTGACGAATTATGGGCATAAACCCTACAGAGATACGCCAGATGTAT
TATCGAAAATATAGACTATAATCCTCCACCGCGGTTTGTCTTGTACTATA
CTATACCGATACTATAATAATAATAATAATAATAATAATAAGCAGTAAGC
AGTGCGAGAAACTTGAGAAACAAAAATATTTTTAGCTATCGTTAATCGCT
CGTGGTTAGGATTGTGAAGTAACGATCGTCAGCTGTATGCATTGACATCG
TGAGCATGCGTGCTTTGGATTTTTTGGGGGGCATAGCGCGTTCCACAGTC
GAGTCGCTTTCATCAGTTTCACTACCATGTATGTATTAACAAATTTGATC
GTGCTGACACATGGTCCCCGGTACTTCCAACATGACCACTTCATACCAAT
AGTGGGAGTGGGAAAGAGAGGCATATTAATCGGTCCATGGTGACCTGCCA
AGGCAGCACTCGTTCGGAACTACCTTGAGGTTTACTGGCCCTGTGCCTGC
GGACTCTCGGTAGTGAACGTCATCGGTACGCAATTGCGCGACCCCATAAA
CTCGGGACTGACCCGATTGCGTATGGCGGTGTCCACTAAATAAATGGACG
CCACCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCATATTCAGCGT
GGGTATGGAGATAAGCAGGCTGACGCGGGATGGGACTGCCGAACCCGTCT
CGCGAGACCAAATTCTCAGGCGCGAGCGCGGACAGGGGTATATTCATTTT
CCCAGTTCAGCTGACCACGAGCAAGATTGGCAACCTTACCCGGTTGATCC
ATACTCTTGCTATATGTGTGACCATACATGTTGCCATTAGCTTTACGTTT
TTCTCTTTTAGTAGTCGCTCGACCTTTTCGTCTTTCTCGTCTACTGGAAC
ATTACATGTTCTCTTTTTATGCCTTATTCCAGATTCAAGTGGTGCCCATT
GGCTTCGGTGGAACAAGTCTCAAAAATAAGCTTATGCCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1455:46201..48240+

>mRNA_F-serratus_M_contig1455.3228.1 ID=mRNA_F-serratus_M_contig1455.3228.1|Name=mRNA_F-serratus_M_contig1455.3228.1|organism=Fucus serratus male|type=CDS|length=1206bp|location=Sequence derived from alignment at F-serratus_M_contig1455:46201..48240+ (Fucus serratus male)
GGGGGAGAGTATCCTTTTCATCTGGTCCAAGTGTTGATCGAAGAGAGGGC
AGACATTATTTTTTCCTCCACCCAAGTGGCGGTAGATGCCACGGCAGATG
GGGGACGAACTTCAGTCACCGTGGACGGATGGTTACAGGAACATAAAGAC
GCCGGCGAAAATGTCACGGAGCCTTTCCTCAACCGGGGGGAGAGTATCCT
TTTCATCTGGTCCAAGTGTTGATCGAAGAGAGGGCAGACATTATTTTTTC
CTCCACCCAAGTGGCGGTAGATGCCACGGCAGATGGGGGACGAACTTCAG
TCACCGTGGACGGATGGTTACAGGAACATAAAGACGCCGGCGAAAATGTC
ACGGAGCCTTTCCTCAACCGCGTGGACAAGTTTTATCAAGAAAATCTCCA
TGGGACACGACCTGTGGTGGTGTACGTTACCGGGAATGACATGTGCCCCT
TCCTGGACGAGTTGACCGCGCCTAGGGATAGCTCAACAGCACCGCCGACG
TCCTCCAGAGGTCCTGATCTGGATATGTCCACGTCGGTGACTGGATCCGA
CGACTTGGAAGCGGCAGCGTTGGCAGTTGCAGCTGGCAAGACGCCCCTCG
TGCTGATGACCCTCGGCTGGGATGCGAGCGGTTCCCCATTCCACAAGGAG
TGCTCCCTGGAGGTTTTGGAGCTGCCTGAGGTGATGCGCTGGTTCGTGTC
CCACAGTCAAGGGGACCTGCTGAGTCCTAAGCGTGGACAAGTTTTATCAA
GAAAATCTCCATGGGACACGACCTGTGGTGGTGTACGTTACCGGGAATGA
CATGTGCCCCTTCCTGGACGAGTTGACCGCGCCTAGGGATAGCTCAACAG
CACCGCCGACGTCCTCCAGAGGTCCTGATCTGGATATGTCCACGTCGGTG
ACTGGATCCGACGACTTGGAAGCGGCAGCGTTGGCAGTTGCAGCTGGCAA
GACGCCCCTCGTGCTGATGACCCTCGGCTGGGATGCGAGCGGTTCCCCAT
TCCACAAGGAGTGCTCCCTGGAGGTTTTGGAGCTGCCTGAGGTGATGCGC
TGGTTCGTGTCCCACAGTCAAGGGGACCTGCTGAGTCCTAAGATTCAAGT
GGTGCCCATTGGCTTCGGTGGAACAAGTCTCAAAAATAAGCTTATGCCAA
TTCAAGTGGTGCCCATTGGCTTCGGTGGAACAAGTCTCAAAAATAAGCTT
ATGCCA
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