mRNA_F-serratus_M_contig1454.3225.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1454.3225.1
Unique NamemRNA_F-serratus_M_contig1454.3225.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1454.3225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1454contigF-serratus_M_contig1454:194333..196044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size305
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1454.3225.1prot_F-serratus_M_contig1454.3225.1Fucus serratus malepolypeptideF-serratus_M_contig1454 194333..196044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929439.184598-CDS-F-serratus_M_contig1454:194332..1944141622929439.184598-CDS-F-serratus_M_contig1454:194332..194414Fucus serratus maleCDSF-serratus_M_contig1454 194333..194414 +
1690962852.8338113-CDS-F-serratus_M_contig1454:194332..1944141690962852.8338113-CDS-F-serratus_M_contig1454:194332..194414Fucus serratus maleCDSF-serratus_M_contig1454 194333..194414 +
1622929439.199823-CDS-F-serratus_M_contig1454:195466..1956561622929439.199823-CDS-F-serratus_M_contig1454:195466..195656Fucus serratus maleCDSF-serratus_M_contig1454 195467..195656 +
1690962852.8420646-CDS-F-serratus_M_contig1454:195466..1956561690962852.8420646-CDS-F-serratus_M_contig1454:195466..195656Fucus serratus maleCDSF-serratus_M_contig1454 195467..195656 +
1622929439.211613-CDS-F-serratus_M_contig1454:196013..1960441622929439.211613-CDS-F-serratus_M_contig1454:196013..196044Fucus serratus maleCDSF-serratus_M_contig1454 196014..196044 +
1690962852.8513494-CDS-F-serratus_M_contig1454:196013..1960441690962852.8513494-CDS-F-serratus_M_contig1454:196013..196044Fucus serratus maleCDSF-serratus_M_contig1454 196014..196044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1454.3225.1

>prot_F-serratus_M_contig1454.3225.1 ID=prot_F-serratus_M_contig1454.3225.1|Name=mRNA_F-serratus_M_contig1454.3225.1|organism=Fucus serratus male|type=polypeptide|length=101bp
GWIGLRTAGHWLARRLHQLKASTTMDLETTVKLTKQVGIETKGPPLRASE
ALMNKAYALFGLSDNGEEAQESKPGKLWTGCSVDGTGWRNGSRFVHLEME
Q
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mRNA from alignment at F-serratus_M_contig1454:194333..196044+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1454.3225.1 ID=mRNA_F-serratus_M_contig1454.3225.1|Name=mRNA_F-serratus_M_contig1454.3225.1|organism=Fucus serratus male|type=mRNA|length=1712bp|location=Sequence derived from alignment at F-serratus_M_contig1454:194333..196044+ (Fucus serratus male)
GGATGGATAGGGCTTCGGACGGCTGGACACTGGCTCGCGCGCCGGCTTCA
CCAGCTCAAGGCCTCCACCACCATGGACCTCGGTATTTCAATTTTTCTTA
TTTCTGTACGATTGTGTGGCCTTGAGAAACTTGGACTTCTTGTTGATCAA
AACTGGTTGGAGCGTGATTCTTCCGTTTTTTTGCTGAGAACGCTGGTCGT
GGGTAGGCGACAACAATCCGAGTCGATCGAGGTTGCCCTCGATATGGAGT
AAGGATGTTTGATGAACCGTTTTGATATTGGTCGGTGCCATTACTTGTAG
AGTCGCATAACTTTTTGTCGCGATTTGGATCCCTGTTGGTCTGAGTAGCG
GGTTGTCACCATGACGTGGCCCGTCGACCTTGGTGTACCTCTTTGTGACC
ACAAGCGGGATTAACATTTGATGGGTCTATGGCTGACTTGTTGTGTCACC
GTAGTTTCTTCAGTTGCCTTGACAATACGCTGAATGTGTGAATCAACGAC
AACAACAACAAACCCCGTCCACTTGCTCCCTGCCGAACCCGTACTATCTA
CTGTCGGATTTAAAAGGTCTTGAATGAATTCGCGGAGACTTTCTTCCGGC
CTTCGGTCGAGGCTCACGAGGGCTACAACGGGGACCGCATACGTGGAACA
TTGACCTGGCGTGATCTTACTGGAAACAGTTGGACCTTCGTTGAGGCGCC
TCCTACAAGGTTCAACTGTTCCCAGTAAGATCACGCCAGGTCAATGTTCC
ACGTATGCGAACCCCGTTGTAGCCCTCGTGAGCCTCGACCGAAGGCCGGA
AGAAAGTCTCCGCGAATTCATTCAAGACCTTTTAAATCCGACAGTAGATA
GTACGGGGTCGGCAGGGAGCAGGTGGACGGGGTTTGTTGTTGTTGTTGTT
GATTCACACATTCAGCGTATTGTCAAGGCAACTGAAGAAGCCCAACACCT
TGAAATATGATGTACCATACATAGCTCATGTATCCCCTTCGCATGCTTTT
ATAACACCTCTCTCTCTCCCTCTCTCTCTCTCTTTCTCCCTCTCGCTCTT
TCTGTCTCGTTCTCGCTCTCTCTGTCTCGTTCTCTCTCTCCCTTCCCGCT
TCCCACGAACGATGGGTGATACCTATGGCCATAGAAACGACGGTGAAGTT
GACAAAACAGGTCGGTATCGAGACCAAGGGCCCACCTCTCCGGGCTTCGG
AGGCACTTATGAATAAAGCTTATGCACTATTCGGCCTTTCCGACAACGGC
GAGGAAGCCCAGGAAAGCAAGCCGGGCAAATTGTGGACGGGGTGCAGTGT
GGACGGGACCGGTTGGAGAAACGGGTGAGGGTTAACTTTGATTAGGTGTA
CGATAGAGATATATTACACTGATCACGTGTTACACCGCTTCGACCTGCTT
GGAGAGCCAAAAACAAAATACTGCTGAGTCTCCAAGTATGGCCGGAGAGG
TTCATGCATGTTTGTTCAATCCAGAGCGTGTTTTTTTTTTGGATCCCGGT
AATTAAACAACGAATCGGCTCGGTCGTCTCCACATTCACGAAGTCATCGG
TACATGGACCGTCGATCAACCCTACTAATACGACGCCGAAACCAGAAAAA
GACTTGCACCTCTGCCAACATGCCTCAGTCGTATCTAATTGTGTGGCCCT
TTGTGGGTACTACACCGCGCATTGTTCACAGCTCCCGCTTCGTACACTTG
GAAATGGAACAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1454:194333..196044+

>mRNA_F-serratus_M_contig1454.3225.1 ID=mRNA_F-serratus_M_contig1454.3225.1|Name=mRNA_F-serratus_M_contig1454.3225.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig1454:194333..196044+ (Fucus serratus male)
GGATGGATAGGGCTTCGGACGGCTGGACACTGGCTCGCGCGCCGGCTTCA
CCAGCTCAAGGCCTCCACCACCATGGACCTCGGGATGGATAGGGCTTCGG
ACGGCTGGACACTGGCTCGCGCGCCGGCTTCACCAGCTCAAGGCCTCCAC
CACCATGGACCTCGAAACGACGGTGAAGTTGACAAAACAGGTCGGTATCG
AGACCAAGGGCCCACCTCTCCGGGCTTCGGAGGCACTTATGAATAAAGCT
TATGCACTATTCGGCCTTTCCGACAACGGCGAGGAAGCCCAGGAAAGCAA
GCCGGGCAAATTGTGGACGGGGTGCAGTGTGGACGGGACCGGTTGGAGAA
ACGGAAACGACGGTGAAGTTGACAAAACAGGTCGGTATCGAGACCAAGGG
CCCACCTCTCCGGGCTTCGGAGGCACTTATGAATAAAGCTTATGCACTAT
TCGGCCTTTCCGACAACGGCGAGGAAGCCCAGGAAAGCAAGCCGGGCAAA
TTGTGGACGGGGTGCAGTGTGGACGGGACCGGTTGGAGAAACGGCTCCCG
CTTCGTACACTTGGAAATGGAACAGCTCCCGCTTCGTACACTTGGAAATG
GAACAG
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