mRNA_F-serratus_M_contig1454.3222.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1454.3222.1
Unique NamemRNA_F-serratus_M_contig1454.3222.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1454.3222.1 vs. uniprot
Match: D7G4A3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A3_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 8.210e-67
Identity = 126/210 (60.00%), Postives = 149/210 (70.95%), Query Frame = 3 
Query:   15 RMIGEGVRVREGETEEDFYGDDHE-GMFRRASKPSSDAPRTG-------------DEGPTLTSEELRKLTIEHAADNHHENRLNAGNGSGFFGGGFMVPR-----GNAATVQARSRLVDDLLRSGRVQLAGVPITREASALRRLHQVLVKNFDHLELQDRGLWSTVMLVVRARSDKYEVQAYSGGPMIIFPEKFTEKNLVLFIGETLLSY 587
            R +GEGVRV+EGETEE FYG+    G  RR + P  D  RT              D GP +TSEELR++TI+HA DNHH +  +AG GSGF GGG    R     G  A  QARSR VDDLLRSGRVQ AGVP+ REA+AL RLHQ LVK+F+H EL DRGLWSTV+LV+RARSD YEVQ +SGGP+++FPEKF+E+NLV F+ E LLSY
Sbjct:    4 RAVGEGVRVKEGETEEAFYGEAFGLGRRRRWAGPRRDGTRTERASRTTDRGQQEHDHGPRMTSEELRRITIDHAGDNHHVDPWDAGAGSGFLGGGLGGGRRGRFGGAEAASQARSRRVDDLLRSGRVQFAGVPVYREAAALLRLHQTLVKHFEHFELHDRGLWSTVVLVLRARSDSYEVQVHSGGPVLVFPEKFSERNLVRFLSEVLLSY 213
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BLAST of mRNA_F-serratus_M_contig1454.3222.1 vs. uniprot
Match: A0A6H5JN32_9PHAE (DUF4460 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN32_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 7.840e-65
Identity = 128/210 (60.95%), Postives = 152/210 (72.38%), Query Frame = 3 
Query:   15 RMIGEGVRVREGETEEDFYGDDHE-GMFRRASKPSSDAPRTG--------DEG--PTLTSEELRKLTIEHAADNHHENRLNAGNGSGFFGGGFMVPRGNA--------ATVQARSRLVDDLLRSGRVQLAGVPITREASALRRLHQVLVKNFDHLELQDRGLWSTVMLVVRARSDKYEVQAYSGGPMIIFPEKFTEKNLVLFIGETLLSY 587
            R +G+GVRVREGETEE FYG+    G  RR   P  D  RT         D+G  PT+TSEELR+LTIEHA DNHH +  +AG GSGFFGGG     G          A  QARSR VDDLLRSGRVQ AGVP++REA+AL RLH+ LVK+F+HLEL DRGLWSTV+LV+RARS+ YEVQ +SGGP+++FPEKF+E+NLV F+ E LLSY
Sbjct:  187 RAMGDGVRVREGETEEAFYGEAFGVGRRRRRGGPPRDGIRTERASRTTDRDQGDAPTMTSEELRELTIEHAGDNHHVDPWDAGAGSGFFGGGLGXXXGRGVRRFGGAEAASQARSRRVDDLLRSGRVQFAGVPVSREAAALLRLHRTLVKHFEHLELHDRGLWSTVVLVLRARSESYEVQVHSGGPVLVFPEKFSERNLVRFLSEVLLSY 396
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BLAST of mRNA_F-serratus_M_contig1454.3222.1 vs. uniprot
Match: D7G1D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D8_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 9.160e-65
Identity = 129/211 (61.14%), Postives = 151/211 (71.56%), Query Frame = 3 
Query:   15 RMIGEGVRVREGETEEDFYGDDHE-GMFRRASKPSSDAPRT-----------GDEGPTLTSEELRKLTIEHAADNHHENRLNAGNGSGFFGGGFMVPR--------GNAATVQARSRLVDDLLRSGRVQLAGVPITREASALRRLHQVLVKNFDHLELQDRGLWSTVMLVVRARSDKYEVQAYSGGPMIIFPEKFTEKNLVLFIGETLLSY 587
            R IG+GVRVREG TEE FYG+    G  RR      D  RT           GDE PT+TSEELRKLTIEHA DNHH +  +AG GSGFFGGG             G  A+ QARSR VDDLLRSGRVQ AGVP++REA+AL RLHQ LVK+F+HLEL DRGLWSTV+LV+RARS+ YEVQ +SGGP+++FPEKF+E++LV F+ E LLSY
Sbjct:  123 RAIGDGVRVREGGTEEAFYGEAFGVGRRRRRGGAPRDGIRTERASRTTNRDQGDE-PTITSEELRKLTIEHAGDNHHVDPWDAGAGSGFFGGGLXXXXXKGARRFGGAEASSQARSRRVDDLLRSGRVQFAGVPVSREAAALLRLHQTLVKHFEHLELHDRGLWSTVVLVLRARSESYEVQVHSGGPVLVFPEKFSERSLVRFLSEVLLSY 332
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1454.3222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4A3_ECTSI8.210e-6760.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JN32_9PHAE7.840e-6560.95DUF4460 domain-containing protein n=1 Tax=Ectocarp... [more]
D7G1D8_ECTSI9.160e-6561.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1454contigF-serratus_M_contig1454:37713..41469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2264
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1454.3222.1prot_F-serratus_M_contig1454.3222.1Fucus serratus malepolypeptideF-serratus_M_contig1454 37730..39798 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929439.600064-UTR-F-serratus_M_contig1454:37712..377291622929439.600064-UTR-F-serratus_M_contig1454:37712..37729Fucus serratus maleUTRF-serratus_M_contig1454 37713..37729 +
1690962853.0229187-UTR-F-serratus_M_contig1454:37712..377291690962853.0229187-UTR-F-serratus_M_contig1454:37712..37729Fucus serratus maleUTRF-serratus_M_contig1454 37713..37729 +
1622929439.6852639-UTR-F-serratus_M_contig1454:39798..414691622929439.6852639-UTR-F-serratus_M_contig1454:39798..41469Fucus serratus maleUTRF-serratus_M_contig1454 39799..41469 +
1690962853.0680304-UTR-F-serratus_M_contig1454:39798..414691690962853.0680304-UTR-F-serratus_M_contig1454:39798..41469Fucus serratus maleUTRF-serratus_M_contig1454 39799..41469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929439.6172445-CDS-F-serratus_M_contig1454:37729..378121622929439.6172445-CDS-F-serratus_M_contig1454:37729..37812Fucus serratus maleCDSF-serratus_M_contig1454 37730..37812 +
1690962853.0315437-CDS-F-serratus_M_contig1454:37729..378121690962853.0315437-CDS-F-serratus_M_contig1454:37729..37812Fucus serratus maleCDSF-serratus_M_contig1454 37730..37812 +
1622929439.6333666-CDS-F-serratus_M_contig1454:38275..384831622929439.6333666-CDS-F-serratus_M_contig1454:38275..38483Fucus serratus maleCDSF-serratus_M_contig1454 38276..38483 +
1690962853.0397139-CDS-F-serratus_M_contig1454:38275..384831690962853.0397139-CDS-F-serratus_M_contig1454:38275..38483Fucus serratus maleCDSF-serratus_M_contig1454 38276..38483 +
1622929439.6510472-CDS-F-serratus_M_contig1454:38899..390281622929439.6510472-CDS-F-serratus_M_contig1454:38899..39028Fucus serratus maleCDSF-serratus_M_contig1454 38900..39028 +
1690962853.0493982-CDS-F-serratus_M_contig1454:38899..390281690962853.0493982-CDS-F-serratus_M_contig1454:38899..39028Fucus serratus maleCDSF-serratus_M_contig1454 38900..39028 +
1622929439.6725557-CDS-F-serratus_M_contig1454:39642..397981622929439.6725557-CDS-F-serratus_M_contig1454:39642..39798Fucus serratus maleCDSF-serratus_M_contig1454 39643..39798 +
1690962853.0597224-CDS-F-serratus_M_contig1454:39642..397981690962853.0597224-CDS-F-serratus_M_contig1454:39642..39798Fucus serratus maleCDSF-serratus_M_contig1454 39643..39798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1454.3222.1

>prot_F-serratus_M_contig1454.3222.1 ID=prot_F-serratus_M_contig1454.3222.1|Name=mRNA_F-serratus_M_contig1454.3222.1|organism=Fucus serratus male|type=polypeptide|length=192bp
MIGEGVRVREGETEEDFYGDDHEGMFRRASKPSSDAPRTGDEGPTLTSEE
LRKLTIEHAADNHHENRLNAGNGSGFFGGGFMVPRGNAATVQARSRLVDD
LLRSGRVQLAGVPITREASALRRLHQVLVKNFDHLELQDRGLWSTVMLVV
RARSDKYEVQAYSGGPMIIFPEKFTEKNLVLFIGETLLSYG*
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mRNA from alignment at F-serratus_M_contig1454:37713..41469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1454.3222.1 ID=mRNA_F-serratus_M_contig1454.3222.1|Name=mRNA_F-serratus_M_contig1454.3222.1|organism=Fucus serratus male|type=mRNA|length=3757bp|location=Sequence derived from alignment at F-serratus_M_contig1454:37713..41469+ (Fucus serratus male)
GCGAACGGGAAGATAGGATGATTGGGGAAGGGGTGAGGGTGCGTGAGGGT
GAGACGGAGGAGGATTTTTACGGTGATGACCACGAAGGCATGTTTCGGAG
GTGAGCGAGTGAGGCGTCTCCTGGTAGGGGGCCGGTACGTTTGGGGGCGC
CGTGAATATTAAAAAGGGGGTTTATGAGAGAATGGGGTGGGATCACATAA
AAAAAAATAGATTCAATACTTCCTATATCCCCCAAACGCTGCGGTCAGCG
ATTGTTGAGATCCAGACCCGCGTCACGGTACAGTGCTTGCGGATTATACC
CCAAAGCCATCGCAGCCGTAGTTTCTGCAAGGCGGCCTATTTAGTGTAGT
GTGTTGTAAGAGATGCCTCTCTGCCCTCATGAACGCCGCCAATTGCCTCC
TCGTCGAGAGTGTGGAGATTATCGGCCTGATTGCGTCCTGGGACGGGACG
GTGATCTGACGTCCGATAAATTTTAACGCGCCCGAAGGATGTTGCCTTGG
GCTGGCGGGCGCCGCCGGCACCTTACAAGCACGCGCGCCCTATCGCGTTC
TCGCTCTCTACAGGGCTTCGAAACCTTCGAGTGACGCTCCGCGGACGGGC
GACGAAGGGCCTACGTTGACCTCAGAGGAGCTGAGGAAGCTAACCATCGA
GCACGCAGCGGACAACCATCACGAGAACCGCTTGAACGCCGGAAACGGGT
CTGGGTTCTTCGGCGGTGGCTTTATGGTACCTCGGGGGAATGCGGCAACC
GTCCAAGCGCGATCTCGACTTGTAATACGAATACCGTTCTTGTTTGTGTA
TGCGGTGTGTGTGTGTGTATTTCTTAAATTGCACATAACCGCACAATCCG
GCCCGATCATCCTAGCCATTCTATACAATTCGCGTTGATCCTGTGTGTGT
GTGTGTGTGTGTGTGGACATGGCTTTTGAGAGCACTTTTTCTTGATTCTA
TTATCTTGTCTTGATCTCCAAACTGCTTCTGCCTTGATCGCCGTCGTTTC
GCCCCGCACCCCCCCCCCTCCCCCCTTGGACAATCCCTATTTACATTTCT
GTATTTTACTTACTAGTAATGTGTACTTTAGCGTCGAGTCTCTCTCAACC
AGGCTGGATGTACATCTCTCGCTCTTATCGTCATCACGAACCGCATGGCA
TCTATCCGCCATCGCGTGGGTTACGTTGGCCCCGTAGGTTGACGATCTTC
TGCGAAGCGGTCGGGTACAGCTAGCGGGAGTTCCAATCACAAGAGAGGCC
TCAGCGCTCCGGAGGTTACACCAAGTCCTCGTCAAGAACTTCGATCATTT
GGAGCTCCAAGACCGGGTGCGGTGGTGAACACATAGACATGCCAAACTTT
GCATTTCGATAACGTCGAGGTCTCGTTGTGGTGTCTTCGGTGGTGCAGAA
GAAAGCGAGCAGCCCTTGTGCTTGATCTAATAGGTTTGTAAGATATGCGC
AGCAAGCTGAGGAGTTCGTTTTTCGAGTGGCGCCTTCGTCGAACGTACTG
TCTGTCGATGGCGTGTTTTGTGAAGAGGCGTTTTTGTCGAGCGACGTGCG
GACGTACTCACTCTATACCCCCCCACCTCTAGTAGGTTTCCGAACGTGCT
CTATCATTGCTAGCAGCAGGCCTTCGCACCCTCTCGCGCGCGTTTGTTTC
TTCCGCCGACGGGCGCCTGCAAAGGGCGGGTGCCGACTCTCGAAAACGTT
GCTTGGCCCGAGCGGATACTGCTTGATACTGCCTGATACTGCTTGATACT
GTACCACAGCAGGAAACAACTAAAGGGCCAGGCGCGGGTCGTTTTGAACC
GAGACGGACGTGTTCCCTGCTGACAGCTACTTCTACTTGCTACTGTGTGT
CTGCAACTGTAGTCGAGTTGCGAACGGCACACGTCAATGTGACCCTGCTT
CGCCCCCCCCCCTGTAAACGCCGCGTGAAGGGCTTATGGAGCACCGTGAT
GCTGGTGGTCAGGGCGCGGTCCGATAAGTACGAAGTTCAGGCGTACTCCG
GTGGACCCATGATCATCTTCCCAGAGAAATTCACGGAAAAAAATCTGGTC
CTCTTTATCGGCGAGACGTTGCTCTCGTACGGCTGACGTTCGCCCGTGGC
AGTTCATCCATTTTACAGTAGCACTTACTGATGCGGTATACACAGCAGCA
GAACACTCTACGTGGAGGTGGAAGGATTCGGGGTGCACCGTCGTGCTGGG
GTAGAGCCTTCGCAATTCCTAACGTTTTCTGCAGATCGATGTATCATGAC
GCTGCTTATAGCCAAGGGCCGAGAAGGAACTGGCACGGTAGGGTTCACGA
GAAGTCTTTGTGGTGCAGTCGCGACTCCTGTGGCCGAGCTACGATTACCA
GGTGGTACACATGTAACGATCTTTGGTCGGAGAGCGAACACAAGTGGCGT
TTAGCACAGGCAGCATTATCTCGGCAGTAGGTGAGGGCATCGTGATGACT
CTGCGGTCAAACCACGCACACATCCAAAGGTCATACCCAGCTAGTATTAT
TAGTACACAGTGGAGACCCAAGGGGCGCGGTTTTCCTTTATCGATTAGAG
CGCCGTTACGTTAGTTATTATTCGTATTAAGAGGTGTGAGTGTCGCCGAG
AATGTCACCCTCAGTACCACCGCAGGTGACGCTATTTGCCCTCCTCGTAC
ACACTGCAGTAGTAAAGTATGTCATGCCCGTGGATATGATTGTCCCCCGG
TCGATTTCCTCGACAAGGTTTCTAGCTACGGTAGCACGGGCGGAGGATGT
GTTGTTGTCTGTAGTCGCTTGCGCTGTGTGGAGCAAATGAGGGGATGGAG
GGAGGATCACAGTAGTTCCATTTCACCCGGGGTGTAAGTCCCCCGGGTGA
TTTACATCGTTACCTACGGTATGGTACAGCTAGAGCTACGGTACACACAC
CATGGTTAGATGAGGGGCAGCACGATGGCACGGCGATCTATTCAAGCTCG
CCCCCGTGAAAATGGGAGGCGCAGTGTTGACCAGGTAATCTTGCGTGATT
CCTTGTGGGACATGGGGCGCTCGGACCCCGAAAATGTCTGTTGGTAACGA
CTTTTAGCAATACGAAGAGAAATAGAAGGGCGAGTGATCCAGTGTCGAGG
GGAAAGGTACGGACGTGGTCGAGATGCGTCAAAGGCCTTTGGGAAAATGA
TTATGGGGTGCTGTTCCGACAGAGACAGGGCGGTTGTTTGCGATTGATTA
GACTGTCCATGACCATGCGCTACCGTAGCCCTAGCAACGTTGACTTGATA
GATGAAACACCAATGATCGAACGCCATTTGTTGAGGCGGCGTTTTCATGT
ACTCGTAGCCAATTAGCCAAGAAACCCATTTTAGACGCTGGGATCAAACC
ATCTGTGTCCCCATAGAGCTTGTGAAAGAATAGCTGACAGTCGTGAAAAA
ATGCGGAACAGCTATATGGCATTACCAACGTGTGATGTTAACGGTTGACT
TGATTAGTATGGTTGGACCTTGGATACCATCGTAGTTCCTCCTTCTGTTG
TACTGGCTCTGTGTTTGTGTGTGTGAGTACTTGTGTTGTTTTTGTTTTAA
TTTTGATCGTCGATATCCTCTTTGCGCGAGCGCTTGTGTTTGTTGTGTGG
TATTCCTATATTCAGCCAAGCTTAAACAAACGGGGTTGAGGATCGGGCGA
ACTGGCATACTGTTGTACTATACTACATACTATATCAGGTATATTAGTAA
TAATGATACAATAATGATGTCACAAGTACCAGGGGTATGACCAAATGATC
AGAAATA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1454:37713..41469+

>mRNA_F-serratus_M_contig1454.3222.1 ID=mRNA_F-serratus_M_contig1454.3222.1|Name=mRNA_F-serratus_M_contig1454.3222.1|organism=Fucus serratus male|type=CDS|length=1152bp|location=Sequence derived from alignment at F-serratus_M_contig1454:37713..41469+ (Fucus serratus male)
ATGATTGGGGAAGGGGTGAGGGTGCGTGAGGGTGAGACGGAGGAGGATTT
TTACGGTGATGACCACGAAGGCATGTTTCGGAGATGATTGGGGAAGGGGT
GAGGGTGCGTGAGGGTGAGACGGAGGAGGATTTTTACGGTGATGACCACG
AAGGCATGTTTCGGAGGGCTTCGAAACCTTCGAGTGACGCTCCGCGGACG
GGCGACGAAGGGCCTACGTTGACCTCAGAGGAGCTGAGGAAGCTAACCAT
CGAGCACGCAGCGGACAACCATCACGAGAACCGCTTGAACGCCGGAAACG
GGTCTGGGTTCTTCGGCGGTGGCTTTATGGTACCTCGGGGGAATGCGGCA
ACCGTCCAAGCGCGATCTCGACTTGGCTTCGAAACCTTCGAGTGACGCTC
CGCGGACGGGCGACGAAGGGCCTACGTTGACCTCAGAGGAGCTGAGGAAG
CTAACCATCGAGCACGCAGCGGACAACCATCACGAGAACCGCTTGAACGC
CGGAAACGGGTCTGGGTTCTTCGGCGGTGGCTTTATGGTACCTCGGGGGA
ATGCGGCAACCGTCCAAGCGCGATCTCGACTTGTTGACGATCTTCTGCGA
AGCGGTCGGGTACAGCTAGCGGGAGTTCCAATCACAAGAGAGGCCTCAGC
GCTCCGGAGGTTACACCAAGTCCTCGTCAAGAACTTCGATCATTTGGAGC
TCCAAGACCGGGTTGACGATCTTCTGCGAAGCGGTCGGGTACAGCTAGCG
GGAGTTCCAATCACAAGAGAGGCCTCAGCGCTCCGGAGGTTACACCAAGT
CCTCGTCAAGAACTTCGATCATTTGGAGCTCCAAGACCGGGGCTTATGGA
GCACCGTGATGCTGGTGGTCAGGGCGCGGTCCGATAAGTACGAAGTTCAG
GCGTACTCCGGTGGACCCATGATCATCTTCCCAGAGAAATTCACGGAAAA
AAATCTGGTCCTCTTTATCGGCGAGACGTTGCTCTCGTACGGCTGAGGCT
TATGGAGCACCGTGATGCTGGTGGTCAGGGCGCGGTCCGATAAGTACGAA
GTTCAGGCGTACTCCGGTGGACCCATGATCATCTTCCCAGAGAAATTCAC
GGAAAAAAATCTGGTCCTCTTTATCGGCGAGACGTTGCTCTCGTACGGCT
GA
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