mRNA_F-serratus_M_contig1452.3217.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1452.3217.1
Unique NamemRNA_F-serratus_M_contig1452.3217.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1452.3217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1452contigF-serratus_M_contig1452:126993..128003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1012
Cds size1011
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929437.6045847-CDS-F-serratus_M_contig1452:126992..1280031622929437.6045847-CDS-F-serratus_M_contig1452:126992..128003Fucus serratus maleCDSF-serratus_M_contig1452 126993..128003 +
1690962851.910628-CDS-F-serratus_M_contig1452:126992..1280031690962851.910628-CDS-F-serratus_M_contig1452:126992..128003Fucus serratus maleCDSF-serratus_M_contig1452 126993..128003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1452.3217.1prot_F-serratus_M_contig1452.3217.1Fucus serratus malepolypeptideF-serratus_M_contig1452 126993..128003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1452.3217.1

>prot_F-serratus_M_contig1452.3217.1 ID=prot_F-serratus_M_contig1452.3217.1|Name=mRNA_F-serratus_M_contig1452.3217.1|organism=Fucus serratus male|type=polypeptide|length=337bp
MVVSVDALPPDPALPHLFPAMHLLLLMSLAASCLLQSGLSLFGDSSGDGG
GRTSHHDSACPQGRTSPRRRKLNRAATSSTSSKVAAFSPPCTTALGQGAA
TRKRSSCPYVDSCRHPQAHPFFSTTTSRTTISSSHSNCLIGPQTAPLSTL
TTERSSGIRFSWSKLATQGLVDPSNGGDGGHEKELFRDDRSRIDPTAPQA
RRRKRPSMKTDADDTPKLQRREGGEAGRGVVRNTSGRGGRAPRGTGARAV
ATAAPNSRKTPVAAAGAGAGSGGGINQDDPLVKTWNSANVLNPSRDEFPL
GSEQRQRQRRRGGADHEQDQIGLDGRRRASPQRTDVR
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mRNA from alignment at F-serratus_M_contig1452:126993..128003+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1452.3217.1 ID=mRNA_F-serratus_M_contig1452.3217.1|Name=mRNA_F-serratus_M_contig1452.3217.1|organism=Fucus serratus male|type=mRNA|length=1011bp|location=Sequence derived from alignment at F-serratus_M_contig1452:126993..128003+ (Fucus serratus male)
ATGGTGGTTTCGGTGGATGCTTTGCCTCCAGACCCCGCCTTACCTCACCT
ATTTCCTGCCATGCATCTCCTCCTCTTGATGTCCCTGGCGGCATCTTGTC
TACTTCAATCTGGACTTTCCCTGTTCGGCGATAGTAGCGGGGACGGGGGA
GGACGCACGTCGCATCATGACAGCGCGTGCCCTCAAGGCCGCACCTCGCC
TCGCCGCCGAAAGCTGAATCGAGCTGCAACGTCGTCAACTTCGAGCAAAG
TCGCCGCTTTTTCGCCGCCATGTACCACAGCACTAGGCCAGGGTGCAGCG
ACCCGAAAGCGCTCGTCCTGCCCTTACGTAGACTCGTGTCGCCACCCTCA
AGCGCACCCTTTCTTCTCAACCACCACCAGCAGAACAACCATCAGCAGTA
GTCACAGTAACTGTCTTATCGGGCCACAAACGGCGCCGCTGTCTACCTTG
ACTACCGAGCGATCATCCGGAATCCGCTTCTCTTGGTCAAAGCTTGCGAC
TCAAGGTCTGGTTGACCCAAGTAACGGTGGAGATGGTGGCCACGAGAAAG
AGTTATTTCGCGATGATCGCAGCCGGATCGATCCGACCGCGCCGCAAGCT
CGCCGCCGCAAGCGTCCGTCCATGAAAACGGACGCTGATGATACTCCCAA
ACTGCAACGGCGAGAGGGCGGTGAGGCGGGAAGAGGGGTCGTCAGGAACA
CTAGTGGGAGGGGAGGGAGAGCACCGAGGGGTACGGGAGCGCGGGCAGTG
GCTACTGCGGCGCCGAACAGCAGAAAAACTCCTGTCGCCGCCGCAGGGGC
TGGGGCTGGGTCTGGGGGGGGCATCAACCAAGATGACCCTTTGGTGAAGA
CCTGGAACTCTGCTAATGTTTTGAATCCCAGCCGTGACGAGTTTCCGCTT
GGATCTGAGCAGCGACAGCGACAGCGGCGGCGAGGAGGTGCTGATCACGA
GCAAGATCAAATCGGCCTCGATGGTCGACGACGTGCCAGCCCGCAGAGGA
CGGACGTTCGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1452:126993..128003+

>mRNA_F-serratus_M_contig1452.3217.1 ID=mRNA_F-serratus_M_contig1452.3217.1|Name=mRNA_F-serratus_M_contig1452.3217.1|organism=Fucus serratus male|type=CDS|length=2022bp|location=Sequence derived from alignment at F-serratus_M_contig1452:126993..128003+ (Fucus serratus male)
ATGGTGGTTTCGGTGGATGCTTTGCCTCCAGACCCCGCCTTACCTCACCT
ATTTCCTGCCATGCATCTCCTCCTCTTGATGTCCCTGGCGGCATCTTGTC
TACTTCAATCTGGACTTTCCCTGTTCGGCGATAGTAGCGGGGACGGGGGA
GGACGCACGTCGCATCATGACAGCGCGTGCCCTCAAGGCCGCACCTCGCC
TCGCCGCCGAAAGCTGAATCGAGCTGCAACGTCGTCAACTTCGAGCAAAG
TCGCCGCTTTTTCGCCGCCATGTACCACAGCACTAGGCCAGGGTGCAGCG
ACCCGAAAGCGCTCGTCCTGCCCTTACGTAGACTCGTGTCGCCACCCTCA
AGCGCACCCTTTCTTCTCAACCACCACCAGCAGAACAACCATCAGCAGTA
GTCACAGTAACTGTCTTATCGGGCCACAAACGGCGCCGCTGTCTACCTTG
ACTACCGAGCGATCATCCGGAATCCGCTTCTCTTGGTCAAAGCTTGCGAC
TCAAGGTCTGGTTGACCCAAGTAACGGTGGAGATGGTGGCCACGAGAAAG
AGTTATTTCGCGATGATCGCAGCCGGATCGATCCGACCGCGCCGCAAGCT
CGCCGCCGCAAGCGTCCGTCCATGAAAACGGACGCTGATGATACTCCCAA
ACTGCAACGGCGAGAGGGCGGTGAGGCGGGAAGAGGGGTCGTCAGGAACA
CTAGTGGGAGGGGAGGGAGAGCACCGAGGGGTACGGGAGCGCGGGCAGTG
GCTACTGCGGCGCCGAACAGCAGAAAAACTCCTGTCGCCGCCGCAGGGGC
TGGGGCTGGGTCTGGGGGGGGCATCAACCAAGATGACCCTTTGGTGAAGA
CCTGGAACTCTGCTAATGTTTTGAATCCCAGCCGTGACGAGTTTCCGCTT
GGATCTGAGCAGCGACAGCGACAGCGGCGGCGAGGAGGTGCTGATCACGA
GCAAGATCAAATCGGCCTCGATGGTCGACGACGTGCCAGCCCGCAGAGGA
CGGACGTTCGAATGGTGGTTTCGGTGGATGCTTTGCCTCCAGACCCCGCC
TTACCTCACCTATTTCCTGCCATGCATCTCCTCCTCTTGATGTCCCTGGC
GGCATCTTGTCTACTTCAATCTGGACTTTCCCTGTTCGGCGATAGTAGCG
GGGACGGGGGAGGACGCACGTCGCATCATGACAGCGCGTGCCCTCAAGGC
CGCACCTCGCCTCGCCGCCGAAAGCTGAATCGAGCTGCAACGTCGTCAAC
TTCGAGCAAAGTCGCCGCTTTTTCGCCGCCATGTACCACAGCACTAGGCC
AGGGTGCAGCGACCCGAAAGCGCTCGTCCTGCCCTTACGTAGACTCGTGT
CGCCACCCTCAAGCGCACCCTTTCTTCTCAACCACCACCAGCAGAACAAC
CATCAGCAGTAGTCACAGTAACTGTCTTATCGGGCCACAAACGGCGCCGC
TGTCTACCTTGACTACCGAGCGATCATCCGGAATCCGCTTCTCTTGGTCA
AAGCTTGCGACTCAAGGTCTGGTTGACCCAAGTAACGGTGGAGATGGTGG
CCACGAGAAAGAGTTATTTCGCGATGATCGCAGCCGGATCGATCCGACCG
CGCCGCAAGCTCGCCGCCGCAAGCGTCCGTCCATGAAAACGGACGCTGAT
GATACTCCCAAACTGCAACGGCGAGAGGGCGGTGAGGCGGGAAGAGGGGT
CGTCAGGAACACTAGTGGGAGGGGAGGGAGAGCACCGAGGGGTACGGGAG
CGCGGGCAGTGGCTACTGCGGCGCCGAACAGCAGAAAAACTCCTGTCGCC
GCCGCAGGGGCTGGGGCTGGGTCTGGGGGGGGCATCAACCAAGATGACCC
TTTGGTGAAGACCTGGAACTCTGCTAATGTTTTGAATCCCAGCCGTGACG
AGTTTCCGCTTGGATCTGAGCAGCGACAGCGACAGCGGCGGCGAGGAGGT
GCTGATCACGAGCAAGATCAAATCGGCCTCGATGGTCGACGACGTGCCAG
CCCGCAGAGGACGGACGTTCGA
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