mRNA_F-serratus_M_contig1452.3214.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1452.3214.1
Unique NamemRNA_F-serratus_M_contig1452.3214.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1452.3214.1 vs. uniprot
Match: A0A6H5KWE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE6_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 7.370e-35
Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 2 
Query:   26 QRRYMYSKFFCALTSSQRARKHRLPYFSLKNVANIRVWLPLRLGKTWLRRHRHERSSDAVV*LAFYLFLALLAAILFE 259
            QRRYMYSK+FCALTSSQRARKHR+P+FSLKNVANIRVWL LR GKTWLRRHR ER +DAVV  AF+L LALLAAIL E
Sbjct:  157 QRRYMYSKYFCALTSSQRARKHRIPHFSLKNVANIRVWLALRAGKTWLRRHRRERKADAVVSSAFFLSLALLAAILSE 234
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BLAST of mRNA_F-serratus_M_contig1452.3214.1 vs. uniprot
Match: D8LCF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF4_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.150e-33
Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 2 
Query:   26 QRRYMYSKFFCALTSSQRARKHRLPYFSLKNVANIRVWLPLRLGKTWLRRHRHERSSDAVV*LAFYLFLALLAAILFE 259
            QRRYMYSK+FCALTSSQRARKHR+P+FSLKNVANIRVWL LR GKTWLRRHR ER +DAVV  AF+L LALLAAIL E
Sbjct:  570 QRRYMYSKYFCALTSSQRARKHRIPHFSLKNVANIRVWLALRAGKTWLRRHRRERKADAVVSSAFFLSLALLAAILSE 647
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BLAST of mRNA_F-serratus_M_contig1452.3214.1 vs. uniprot
Match: M4BZH5_HYAAE (Phtf-FEM1B_bdg domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZH5_HYAAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.090e-16
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 2 
Query:   29 RRYMYSKFFCALTSSQRARKHRLPYFSLKNVANIRVWLPLRLGKTWLRRHRHERSSDAVV*LAFYLFLALLAAI 250
            RR++Y+K F ALTSS+RAR   LP+F LKNV NI+ W+ LR G+TWL+R   +R++D +V  +F + L LL  +
Sbjct:  405 RRFLYAKCFTALTSSRRARMANLPHFRLKNVVNIKAWISLRGGRTWLKRQGRQRAADEIVSTSFLIILVLLVVM 478
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BLAST of mRNA_F-serratus_M_contig1452.3214.1 vs. uniprot
Match: A0A662WT96_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WT96_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.570e-16
Identity = 36/74 (48.65%), Postives = 53/74 (71.62%), Query Frame = 2 
Query:   29 RRYMYSKFFCALTSSQRARKHRLPYFSLKNVANIRVWLPLRLGKTWLRRHRHERSSDAVV*LAFYLFLALLAAI 250
            RR++Y+K F ALTSS+R+R   LP+F LKNV NI+ W+ LR G+TWL+R   +R++D +V  +F + L LL  +
Sbjct:   64 RRFLYAKCFTALTSSRRSRLANLPHFRLKNVINIKAWISLRGGRTWLKRQGRQRAADEIVSTSFLVILVLLVVM 137
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BLAST of mRNA_F-serratus_M_contig1452.3214.1 vs. uniprot
Match: W2JSV7_PHYPR (Phtf-FEM1B_bdg domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2JSV7_PHYPR)

HSP 1 Score: 81.6 bits (200), Expect = 7.610e-16
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:   29 RRYMYSKFFCALTSSQRARKHRLPYFSLKNVANIRVWLPLRLGKTWLRRHRHERSSDAVV*LAFYLFLALLAAI 250
            RR++Y+K F ALTSS+R+R  +LP+F LKNV NI+ W+ LR G+TWL+R   +R++D +V  +F + L LL  +
Sbjct:  398 RRFLYAKCFTALTSSRRSRLAKLPHFRLKNVVNIKAWISLRGGRTWLKRQGRQRAADEIVSTSFLIILVLLVVM 471
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BLAST of mRNA_F-serratus_M_contig1452.3214.1 vs. uniprot
Match: A0A0P1B782_PLAHL (Homeodomain transcription factor 2 isoform x3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B782_PLAHL)

HSP 1 Score: 81.6 bits (200), Expect = 7.610e-16
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:   29 RRYMYSKFFCALTSSQRARKHRLPYFSLKNVANIRVWLPLRLGKTWLRRHRHERSSDAVV*LAFYLFLALLAAI 250
            RR++Y+K F ALTSS+R+R  +LP+F LKNV NI+ W+ LR G+TWL+R   +R++D +V  +F + L LL  +
Sbjct:  403 RRFLYAKCFTALTSSRRSRLAKLPHFRLKNVVNIKAWISLRGGRTWLKRQGRQRAADEIVSTSFLIILVLLVVM 476
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BLAST of mRNA_F-serratus_M_contig1452.3214.1 vs. uniprot
Match: A0A0W8DW41_PHYNI (Phtf-FEM1B_bdg domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DW41_PHYNI)

HSP 1 Score: 81.6 bits (200), Expect = 7.790e-16
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:   29 RRYMYSKFFCALTSSQRARKHRLPYFSLKNVANIRVWLPLRLGKTWLRRHRHERSSDAVV*LAFYLFLALLAAI 250
            RR++Y+K F ALTSS+R+R  +LP+F LKNV NI+ W+ LR G+TWL+R   +R++D +V  +F + L LL  +
Sbjct:  599 RRFLYAKCFTALTSSRRSRLAKLPHFRLKNVVNIKAWISLRGGRTWLKRQGRQRAADEIVSTSFLIILVLLVVM 672
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BLAST of mRNA_F-serratus_M_contig1452.3214.1 vs. uniprot
Match: A0A2D4BHH8_PYTIN (Homeodomain transcription factor, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHH8_PYTIN)

HSP 1 Score: 81.6 bits (200), Expect = 7.880e-16
Identity = 37/74 (50.00%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:   29 RRYMYSKFFCALTSSQRARKHRLPYFSLKNVANIRVWLPLRLGKTWLRRHRHERSSDAVV*LAFYLFLALLAAI 250
            RR MY+K F ALTSS+R+R + LP+F LKNV NI+ W+ LR G+TWL+R   +R++D +V  +F + + LLA +
Sbjct:  764 RRLMYAKCFTALTSSRRSRANNLPHFRLKNVVNIKAWISLRGGRTWLKRQGRQRAADEIVSTSFLINMVLLAVM 837
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BLAST of mRNA_F-serratus_M_contig1452.3214.1 vs. uniprot
Match: A0A484EHV8_BRELC (Phtf-FEM1B_bdg domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHV8_BRELC)

HSP 1 Score: 81.6 bits (200), Expect = 7.890e-16
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:   29 RRYMYSKFFCALTSSQRARKHRLPYFSLKNVANIRVWLPLRLGKTWLRRHRHERSSDAVV*LAFYLFLALLAAI 250
            RR++Y+K F ALTSS+R+R  +LP+F LKNV NI+ W+ LR G+TWL+R   +R++D +V  +F + L LL  +
Sbjct:  779 RRFLYAKCFTALTSSRRSRLAKLPHFRLKNVVNIKAWISLRGGRTWLKRQGRQRAADEIVSTSFLIILVLLVVM 852
[Close]
BLAST of mRNA_F-serratus_M_contig1452.3214.1 vs. uniprot
Match: A0A7S0KZY2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0KZY2_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 1.260e-15
Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 2 
Query:   32 RYMYSKFFCALTSSQRARKHRLPYFSLKNVANIRVWLPLRLGKTWLRRHRHERSSDAVV*LAFYLFLALLAAILFEMSHHHNLRKKRL 295
            R+MY+KFF ALTSS RA +  LP+F+LKNV N+RVWL LR G+ WL++   +R +DAVV  A +  L +L  +L  ++   ++ +++L
Sbjct:   69 RWMYAKFFNALTSSTRASRLGLPHFTLKNVVNVRVWLSLRAGRGWLKQQAAQRRADAVV-SALFTSLLVLVTMLVTVAFDDSVERQQL 155
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1452.3214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWE6_9PHAE7.370e-3583.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCF4_ECTSI1.150e-3383.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
M4BZH5_HYAAE4.090e-1650.00Phtf-FEM1B_bdg domain-containing protein n=1 Tax=H... [more]
A0A662WT96_9STRA6.570e-1648.65Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
W2JSV7_PHYPR7.610e-1648.65Phtf-FEM1B_bdg domain-containing protein n=10 Tax=... [more]
A0A0P1B782_PLAHL7.610e-1648.65Homeodomain transcription factor 2 isoform x3 n=1 ... [more]
A0A0W8DW41_PHYNI7.790e-1648.65Phtf-FEM1B_bdg domain-containing protein n=1 Tax=P... [more]
A0A2D4BHH8_PYTIN7.880e-1650.00Homeodomain transcription factor, putative n=1 Tax... [more]
A0A484EHV8_BRELC7.890e-1648.65Phtf-FEM1B_bdg domain-containing protein n=1 Tax=B... [more]
A0A7S0KZY2_9EUKA1.260e-1545.45Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1452contigF-serratus_M_contig1452:36935..37256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue9.8e-22
Seed eggNOG ortholog2880.D8LCF4
Preferred namePHTF1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005794,GO:0005801,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0012505,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.transcription, DNA-templated
EggNOG OGs28I6J@1,2QQGQ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size322
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1452.3214.1prot_F-serratus_M_contig1452.3214.1Fucus serratus malepolypeptideF-serratus_M_contig1452 36972..37145 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929437.6480465-UTR-F-serratus_M_contig1452:36934..369711622929437.6480465-UTR-F-serratus_M_contig1452:36934..36971Fucus serratus maleUTRF-serratus_M_contig1452 36935..36971 +
1690962851.9275236-UTR-F-serratus_M_contig1452:36934..369711690962851.9275236-UTR-F-serratus_M_contig1452:36934..36971Fucus serratus maleUTRF-serratus_M_contig1452 36935..36971 +
1622929437.6782799-UTR-F-serratus_M_contig1452:37145..372561622929437.6782799-UTR-F-serratus_M_contig1452:37145..37256Fucus serratus maleUTRF-serratus_M_contig1452 37146..37256 +
1690962851.9612265-UTR-F-serratus_M_contig1452:37145..372561690962851.9612265-UTR-F-serratus_M_contig1452:37145..37256Fucus serratus maleUTRF-serratus_M_contig1452 37146..37256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929437.6626315-CDS-F-serratus_M_contig1452:36971..371451622929437.6626315-CDS-F-serratus_M_contig1452:36971..37145Fucus serratus maleCDSF-serratus_M_contig1452 36972..37145 +
1690962851.939947-CDS-F-serratus_M_contig1452:36971..371451690962851.939947-CDS-F-serratus_M_contig1452:36971..37145Fucus serratus maleCDSF-serratus_M_contig1452 36972..37145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1452.3214.1

>prot_F-serratus_M_contig1452.3214.1 ID=prot_F-serratus_M_contig1452.3214.1|Name=mRNA_F-serratus_M_contig1452.3214.1|organism=Fucus serratus male|type=polypeptide|length=58bp
MYSKFFCALTSSQRARKHRLPYFSLKNVANIRVWLPLRLGKTWLRRHRHE
RSSDAVV*
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mRNA from alignment at F-serratus_M_contig1452:36935..37256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1452.3214.1 ID=mRNA_F-serratus_M_contig1452.3214.1|Name=mRNA_F-serratus_M_contig1452.3214.1|organism=Fucus serratus male|type=mRNA|length=322bp|location=Sequence derived from alignment at F-serratus_M_contig1452:36935..37256+ (Fucus serratus male)
CTCCGTTACACTTTTATAAAAACGCCAGAGGCGATACATGTACTCCAAGT
TTTTCTGCGCGCTGACGTCGTCCCAGCGGGCGCGCAAGCACCGTCTACCG
TACTTCTCCCTCAAGAACGTGGCGAACATCAGGGTCTGGCTGCCACTCCG
CTTGGGGAAGACGTGGCTGAGGCGGCACCGGCATGAGCGCAGTTCGGATG
CTGTCGTGTAACTTGCGTTCTACTTGTTCCTGGCCCTACTGGCCGCAATT
CTCTTCGAGATGAGCCATCACCATAATCTTCGAAAAAAACGTCTCTGAAA
GGTGCTTGGAGAAAGAAAGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1452:36935..37256+

>mRNA_F-serratus_M_contig1452.3214.1 ID=mRNA_F-serratus_M_contig1452.3214.1|Name=mRNA_F-serratus_M_contig1452.3214.1|organism=Fucus serratus male|type=CDS|length=348bp|location=Sequence derived from alignment at F-serratus_M_contig1452:36935..37256+ (Fucus serratus male)
ATGTACTCCAAGTTTTTCTGCGCGCTGACGTCGTCCCAGCGGGCGCGCAA
GCACCGTCTACCGTACTTCTCCCTCAAGAACGTGGCGAACATCAGGGTCT
GGCTGCCACTCCGCTTGGGGAAGACGTGGCTGAGGCGGCACCGGCATGAG
CGCAGTTCGGATGCTGTCGTGTAAATGTACTCCAAGTTTTTCTGCGCGCT
GACGTCGTCCCAGCGGGCGCGCAAGCACCGTCTACCGTACTTCTCCCTCA
AGAACGTGGCGAACATCAGGGTCTGGCTGCCACTCCGCTTGGGGAAGACG
TGGCTGAGGCGGCACCGGCATGAGCGCAGTTCGGATGCTGTCGTGTAA
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