mRNA_F-serratus_M_contig1452.3212.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1452.3212.1
Unique NamemRNA_F-serratus_M_contig1452.3212.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1452.3212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1452contigF-serratus_M_contig1452:2391..3684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size801
Cds size771
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1452.3212.1prot_F-serratus_M_contig1452.3212.1Fucus serratus malepolypeptideF-serratus_M_contig1452 2391..3655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929437.378788-CDS-F-serratus_M_contig1452:2390..31231622929437.378788-CDS-F-serratus_M_contig1452:2390..3123Fucus serratus maleCDSF-serratus_M_contig1452 2391..3123 -
1690962851.8187985-CDS-F-serratus_M_contig1452:2390..31231690962851.8187985-CDS-F-serratus_M_contig1452:2390..3123Fucus serratus maleCDSF-serratus_M_contig1452 2391..3123 -
1622929437.3901145-CDS-F-serratus_M_contig1452:3617..36551622929437.3901145-CDS-F-serratus_M_contig1452:3617..3655Fucus serratus maleCDSF-serratus_M_contig1452 3618..3655 -
1690962851.8343058-CDS-F-serratus_M_contig1452:3617..36551690962851.8343058-CDS-F-serratus_M_contig1452:3617..3655Fucus serratus maleCDSF-serratus_M_contig1452 3618..3655 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929437.4099152-UTR-F-serratus_M_contig1452:3655..36841622929437.4099152-UTR-F-serratus_M_contig1452:3655..3684Fucus serratus maleUTRF-serratus_M_contig1452 3656..3684 -
1690962851.8431468-UTR-F-serratus_M_contig1452:3655..36841690962851.8431468-UTR-F-serratus_M_contig1452:3655..3684Fucus serratus maleUTRF-serratus_M_contig1452 3656..3684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1452.3212.1

>prot_F-serratus_M_contig1452.3212.1 ID=prot_F-serratus_M_contig1452.3212.1|Name=mRNA_F-serratus_M_contig1452.3212.1|organism=Fucus serratus male|type=polypeptide|length=257bp
MVTGGSSNDERVRAATDPTDTTLLDRRRSSGGSVAPTVDGDSVDDTVSNL
DSVSHDLLEYTTTTESLSFPLDLDGLRTEGGISEEVDGGIFSPLNRLRRR
GSCGRASSSWTSVARAKVETAAFAVAGAADNSADRYEKRYTLAAPSDGAY
LATVAGAPLSTPGVGSAGGLSETGWRGISASRWPVERKRPSVGVSGSAAE
ELEGSGNVAEYLSSISTTITDVAAASKGERSSQALESTVDSVVTTAAGNF
SKFDFTL
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mRNA from alignment at F-serratus_M_contig1452:2391..3684-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1452.3212.1 ID=mRNA_F-serratus_M_contig1452.3212.1|Name=mRNA_F-serratus_M_contig1452.3212.1|organism=Fucus serratus male|type=mRNA|length=1294bp|location=Sequence derived from alignment at F-serratus_M_contig1452:2391..3684- (Fucus serratus male)
GGCGAACGAGGGAGGGGGAAGGCGGGTTGATGGTGACTGGAGGGAGCAGC
AACGACGAGCGCGTGCGGCAAGTAGAAGCGAGACGGCAAAGTTTGTGTAT
GGGCGCCAGGGGCCTTAACGGGTGGGGACGATGTCCTGACGGGTATCATA
TCGTAGCGGCACGTGGTTGCCTCGATCTGTTTTATCGGTAATGTGGTCGT
GGTCGTGGTCGCTTTCCATCACCGTAGGGACTTTCTGCGGGACGTTTTTC
CCTAGGTGATGGTGGATGTTGCCCGTGTTGTCCTAGATGACATTATCCCT
GTTTTTTAATCGAAATATCAAACCGTGTTCGGTGTTTGATCCCATTATAC
GTCATATTTCCGTACATATTCCCCGATATCATCGATACGGTATCATGGAT
ATCATCGGTACAGTGTCAATTGGGGGAGGGGGGGGGGTGGTTACCGGAGT
TTTTTTCATCTCCCCACTACCCCCACCCGATGCTTCCTACACGCGAGTCA
CCTACCCCTCTCCCCTCTTATACCCACCCATCCCTCCTACCAATAAACCC
TCCCCTTTCAGCGCTGCGACCGATCCCACCGACACGACGCTATTGGACCG
ACGCCGCTCATCGGGCGGCAGCGTAGCACCGACGGTGGATGGAGACAGCG
TCGACGACACCGTGAGCAACCTCGACAGCGTGAGCCACGACCTCCTCGAA
TATACCACTACTACGGAATCTCTGTCGTTTCCGCTTGACCTCGACGGTCT
ACGGACGGAGGGCGGAATATCTGAAGAGGTGGATGGCGGGATCTTCTCCC
CTCTCAACCGCCTTCGACGGCGAGGCTCTTGCGGAAGAGCTTCGTCTTCG
TGGACCTCTGTAGCGCGGGCCAAGGTCGAAACCGCCGCCTTTGCTGTTGC
CGGCGCCGCGGATAATTCCGCGGACCGTTACGAGAAACGTTATACGCTGG
CAGCGCCCAGCGACGGTGCTTACCTGGCGACGGTCGCGGGAGCGCCGCTG
TCCACGCCAGGCGTGGGAAGCGCGGGAGGTCTCTCTGAGACAGGATGGCG
CGGAATCTCGGCGTCTCGTTGGCCGGTCGAGAGAAAAAGACCGAGCGTCG
GCGTTTCGGGGAGCGCAGCGGAGGAGTTGGAAGGATCAGGAAACGTCGCC
GAATATCTGTCGAGCATTTCGACGACAATCACCGATGTTGCCGCGGCGTC
GAAGGGAGAGCGGTCGAGCCAAGCTCTAGAATCGACAGTCGATTCGGTAG
TCACTACTGCGGCGGGCAACTTTTCGAAATTTGATTTCACGCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1452:2391..3684-

>mRNA_F-serratus_M_contig1452.3212.1 ID=mRNA_F-serratus_M_contig1452.3212.1|Name=mRNA_F-serratus_M_contig1452.3212.1|organism=Fucus serratus male|type=CDS|length=1542bp|location=Sequence derived from alignment at F-serratus_M_contig1452:2391..3684- (Fucus serratus male)
ATGGTGACTGGAGGGAGCAGCAACGACGAGCGCGTGCGATGGTGACTGGA
GGGAGCAGCAACGACGAGCGCGTGCGCGCTGCGACCGATCCCACCGACAC
GACGCTATTGGACCGACGCCGCTCATCGGGCGGCAGCGTAGCACCGACGG
TGGATGGAGACAGCGTCGACGACACCGTGAGCAACCTCGACAGCGTGAGC
CACGACCTCCTCGAATATACCACTACTACGGAATCTCTGTCGTTTCCGCT
TGACCTCGACGGTCTACGGACGGAGGGCGGAATATCTGAAGAGGTGGATG
GCGGGATCTTCTCCCCTCTCAACCGCCTTCGACGGCGAGGCTCTTGCGGA
AGAGCTTCGTCTTCGTGGACCTCTGTAGCGCGGGCCAAGGTCGAAACCGC
CGCCTTTGCTGTTGCCGGCGCCGCGGATAATTCCGCGGACCGTTACGAGA
AACGTTATACGCTGGCAGCGCCCAGCGACGGTGCTTACCTGGCGACGGTC
GCGGGAGCGCCGCTGTCCACGCCAGGCGTGGGAAGCGCGGGAGGTCTCTC
TGAGACAGGATGGCGCGGAATCTCGGCGTCTCGTTGGCCGGTCGAGAGAA
AAAGACCGAGCGTCGGCGTTTCGGGGAGCGCAGCGGAGGAGTTGGAAGGA
TCAGGAAACGTCGCCGAATATCTGTCGAGCATTTCGACGACAATCACCGA
TGTTGCCGCGGCGTCGAAGGGAGAGCGGTCGAGCCAAGCTCTAGAATCGA
CAGTCGATTCGGTAGTCACTACTGCGGCGGGCAACTTTTCGAAATTTGAT
TTCACGCTCCGCTGCGACCGATCCCACCGACACGACGCTATTGGACCGAC
GCCGCTCATCGGGCGGCAGCGTAGCACCGACGGTGGATGGAGACAGCGTC
GACGACACCGTGAGCAACCTCGACAGCGTGAGCCACGACCTCCTCGAATA
TACCACTACTACGGAATCTCTGTCGTTTCCGCTTGACCTCGACGGTCTAC
GGACGGAGGGCGGAATATCTGAAGAGGTGGATGGCGGGATCTTCTCCCCT
CTCAACCGCCTTCGACGGCGAGGCTCTTGCGGAAGAGCTTCGTCTTCGTG
GACCTCTGTAGCGCGGGCCAAGGTCGAAACCGCCGCCTTTGCTGTTGCCG
GCGCCGCGGATAATTCCGCGGACCGTTACGAGAAACGTTATACGCTGGCA
GCGCCCAGCGACGGTGCTTACCTGGCGACGGTCGCGGGAGCGCCGCTGTC
CACGCCAGGCGTGGGAAGCGCGGGAGGTCTCTCTGAGACAGGATGGCGCG
GAATCTCGGCGTCTCGTTGGCCGGTCGAGAGAAAAAGACCGAGCGTCGGC
GTTTCGGGGAGCGCAGCGGAGGAGTTGGAAGGATCAGGAAACGTCGCCGA
ATATCTGTCGAGCATTTCGACGACAATCACCGATGTTGCCGCGGCGTCGA
AGGGAGAGCGGTCGAGCCAAGCTCTAGAATCGACAGTCGATTCGGTAGTC
ACTACTGCGGCGGGCAACTTTTCGAAATTTGATTTCACGCTC
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