mRNA_F-serratus_M_contig1450.3210.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1450.3210.1
Unique NamemRNA_F-serratus_M_contig1450.3210.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1450.3210.1 vs. uniprot
Match: D7G2A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2A1_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 5.610e-104
Identity = 226/393 (57.51%), Postives = 256/393 (65.14%), Query Frame = 1 
Query:   28 RRPANGKAPGRRDPEAVARMEAEAKLAAERLQKE---GTDRSWLLPTNVDYYTDRAALLRELVKEMPADKRLSFQTRVANACTKEAVEGVLLDYATRLECLVLPHARSRDVDLHQVKKVPKKDPS-----EPPHAWHEELWATVEERIMEGLLESEPHVAEVG----------RTGSRGESERVAPVEGGAAVEVDKARALANEEWKKVRAVAATGEVFKAMSRTGAGGDAYFALVALFCTADKLVVPVACQESPIEVDFLHQQR----------QRQKGRAKKGKDCSGGGG----VHVMVTVPSTFDIYLQ-GGHVDERGSGQMRKGASAGSXXXXXXXXXXXXXXXXXSRKKNPAE--------AAADASIALHLVRVRAVVEEEIWVVG 1083
            RRPA+G+APGRRDP AVAR+EAEA   A+  ++E     D SW LP+NVDYY+  AALLRELVKEMPADKRLSFQTRVANA TKE++E VL DYA RLE LVLPHARSR++DL QVKK  K+  S       P  WHEELWAT+E R+ME +L                    ++  RG ++      G A    DKARALA EEW K RAVA T EVFKAMSRTGAGGDAYFALVALFCTADKLVVPV CQESPI V+FL++            +R K R   GK    G G    VHV+VTVPSTFDIYL+ GG   E   G          XXXXX XXXXXXXXX   RK + +         AAADAS ALHLVRV+AVVEEEIW +G
Sbjct:  120 RRPADGRAPGRRDPTAVARLEAEAAARAKAEKEELGGRVDLSWQLPSNVDYYSAPAALLRELVKEMPADKRLSFQTRVANARTKESIESVLEDYAERLESLVLPHARSREMDLQQVKKTGKRSFSGGALPTSPTTWHEELWATLEARVMESVLSGXXXXXXXXXXXXXXXXXXKSNGRGSTDEAVGGRGAAPAVGDKARALALEEWNKARAVATTSEVFKAMSRTGAGGDAYFALVALFCTADKLVVPVHCQESPITVEFLNRSSAAAGGKGARGRRSKERLSFGKKKGAGKGKGDDVHVLVTVPSTFDIYLRDGGTAGEGADGXXXXXXXXXXXXXXXRXXXXXXXXXKIHRKSSTSSNHSNGDGAAAADASNALHLVRVKAVVEEEIWGLG 512
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1450.3210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2A1_ECTSI5.610e-10457.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1450contigF-serratus_M_contig1450:222214..224808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1442
Cds size1074
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1450.3210.1prot_F-serratus_M_contig1450.3210.1Fucus serratus malepolypeptideF-serratus_M_contig1450 222298..224524 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929436.889254-UTR-F-serratus_M_contig1450:222213..2222971622929436.889254-UTR-F-serratus_M_contig1450:222213..222297Fucus serratus maleUTRF-serratus_M_contig1450 222214..222297 +
1690962851.6106536-UTR-F-serratus_M_contig1450:222213..2222971690962851.6106536-UTR-F-serratus_M_contig1450:222213..222297Fucus serratus maleUTRF-serratus_M_contig1450 222214..222297 +
1622929437.0185964-UTR-F-serratus_M_contig1450:224524..2248081622929437.0185964-UTR-F-serratus_M_contig1450:224524..224808Fucus serratus maleUTRF-serratus_M_contig1450 224525..224808 +
1690962851.6547287-UTR-F-serratus_M_contig1450:224524..2248081690962851.6547287-UTR-F-serratus_M_contig1450:224524..224808Fucus serratus maleUTRF-serratus_M_contig1450 224525..224808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929436.9197187-CDS-F-serratus_M_contig1450:222297..2223971622929436.9197187-CDS-F-serratus_M_contig1450:222297..222397Fucus serratus maleCDSF-serratus_M_contig1450 222298..222397 +
1690962851.6187744-CDS-F-serratus_M_contig1450:222297..2223971690962851.6187744-CDS-F-serratus_M_contig1450:222297..222397Fucus serratus maleCDSF-serratus_M_contig1450 222298..222397 +
1622929436.9475465-CDS-F-serratus_M_contig1450:222885..2230731622929436.9475465-CDS-F-serratus_M_contig1450:222885..223073Fucus serratus maleCDSF-serratus_M_contig1450 222886..223073 +
1690962851.626842-CDS-F-serratus_M_contig1450:222885..2230731690962851.626842-CDS-F-serratus_M_contig1450:222885..223073Fucus serratus maleCDSF-serratus_M_contig1450 222886..223073 +
1622929436.995153-CDS-F-serratus_M_contig1450:223719..2238771622929436.995153-CDS-F-serratus_M_contig1450:223719..223877Fucus serratus maleCDSF-serratus_M_contig1450 223720..223877 +
1690962851.6356544-CDS-F-serratus_M_contig1450:223719..2238771690962851.6356544-CDS-F-serratus_M_contig1450:223719..223877Fucus serratus maleCDSF-serratus_M_contig1450 223720..223877 +
1622929437.0082426-CDS-F-serratus_M_contig1450:223896..2245241622929437.0082426-CDS-F-serratus_M_contig1450:223896..224524Fucus serratus maleCDSF-serratus_M_contig1450 223897..224524 +
1690962851.645372-CDS-F-serratus_M_contig1450:223896..2245241690962851.645372-CDS-F-serratus_M_contig1450:223896..224524Fucus serratus maleCDSF-serratus_M_contig1450 223897..224524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1450.3210.1

>prot_F-serratus_M_contig1450.3210.1 ID=prot_F-serratus_M_contig1450.3210.1|Name=mRNA_F-serratus_M_contig1450.3210.1|organism=Fucus serratus male|type=polypeptide|length=358bp
MEAEAKLAAERLQKEGTDRSWLLPTNVDYYTDRAALLRELVKEMPADKRL
SFQTRVANACTKEAVEGVLLDYATRLECLVLPHARSRDVDLHQVKKVPKK
DPSEPPHAWHEELWATVEERIMEGLLESEPHVAEVGRTGSRGESERVAPV
EGGAAVEVDKARALANEEWKKVRAVAATGEVFKAMSRTGAGGDAYFALVA
LFCTADKLVVPVACQESPIEVDFLHQQRQRQKGRAKKGKDCSGGGGVHVM
VTVPSTFDIYLQGGHVDERGSGQMRKGASAGSGGRGLGGASSSSSSSVGS
RKKNPAEAAADASIALHLVRVRAVVEEEIWVVGSDKRSRAGDVGLPSGDD
MPPRSNC*
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mRNA from alignment at F-serratus_M_contig1450:222214..224808+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1450.3210.1 ID=mRNA_F-serratus_M_contig1450.3210.1|Name=mRNA_F-serratus_M_contig1450.3210.1|organism=Fucus serratus male|type=mRNA|length=2595bp|location=Sequence derived from alignment at F-serratus_M_contig1450:222214..224808+ (Fucus serratus male)
GGCAAGAAAGGCAGCGGGCGTGCGAAGCGTCGACCCGCTAACGGAAAGGC
TCCCGGGCGGCGGGACCCCGAGGCGGTGGCGAGGATGGAGGCGGAGGCGA
AGCTCGCCGCCGAGAGGCTGCAGAAGGAGGGGACTGATCGTTCGTGGCTG
CTGCCGACGAACGTGGACTACTACACCGATCGAGGTATGATCCCGGGGAG
CCGCGGTATACGGTCTTCTAAGACGCGGTGGTGACGGGTCGGTTTCGGCA
TCGGGCTGTGTACTGTATACTGTATTTTTAGTAAACGCTTAAACGATGGA
GTAGAGCGTGCTGAAGGGGTCCTTGTTTGTCCTAAGGAGGAGGGCGGGAG
TAAAAGAGAGAGGAGAAAGGCAGGGTGGGAAATATTCGAGGCGGGGGTAA
GGGTTCATTCGGAGCTTTTATGGTGAAGGGCACGCGGTAGGATGGCGTCG
CGGTTTCAATCAGGTTCTCGGGATTGTGCTTGTATAGTAATTTGTGCGTC
GTACTGGGGGGCTGGGGTTGTGCGGCCGCTAAACGCAGCCGCGCTTACAC
GTCAGCAATCATTGCGAGGATCTGCAGCAGTCGTCCCTCTGTTTCCGCCA
CCTCCCTCTTAATACACCCACCCCCCCACCCACCCCCGTACCCTTCCGTG
TGGCGCGTCTGGAACGCATCAGCGGCGTTGCTGCGAGAGCTGGTGAAGGA
GATGCCTGCGGACAAGCGACTCTCCTTCCAGACACGCGTCGCGAATGCCT
GCACCAAGGAGGCGGTGGAGGGCGTGCTTCTGGACTATGCCACGAGGCTG
GAGTGCCTCGTCCTCCCTCACGCGCGCTCGAGGGATGTCGACCTGCACCA
GGTCAAGAAGGTACGGGCTATCTTGAAGGTCGTGTATTGTAGAGATATGT
GTTTATTGCGTGTGTGTTCACGTACTTTACTCTACTAAAACGGGTTTGAA
GTGACGTAAGAAACGCGCGGTCCATTGAAATAATGGAGGCGTTCTGGAGG
CCTTTCGCATATCGGTGTCCACTTTTTTGTTTTTGACGACAGACGCGGTG
TCGATCGACTTCGGTAGGGGGGGGTGGAGAGAAAGAGAGAGCAAGAATGG
TTTTGCCTCGACGACGGTCGTGTGAGACAGATACAAATAAATCCCTACGA
GATATGATTGTCGTTGTCATCGCTTTGTTCCCCACGTGAAAAATGCCTCC
TCTTTGCTGTTTTCGAAGACCTAGCCACGGCGTCCGTGGTGGGGATGGAT
TTAGTTAGTTTCCCGCTGTAGTTTCCCCTTTTCACTCGCCCTATCCCGTT
CTCCTTATTAACACGTCGTATGATCGTGCTTGAATGTGCGCGGTTACACG
CACCGCGGCGTCACGTGTCGGTTCGTGACGTCTCGTCTCGGTTCTTATCG
TCACGTGTCATGACTTACTATGACGTCACGCGGACGGTGGTGGGGGAAAC
GCTGATATAAATAAAAGGATACGTCCCGCGAGCGAGTGTTGTTCGACGGC
AAGGAGGTGCCGAAGAAGGATCCTTCAGAGCCCCCACACGCGTGGCACGA
GGAGCTCTGGGCGACGGTGGAAGAGCGGATCATGGAAGGACTTTTGGAGA
GCGAGCCCCACGTAGCGGAAGTTGGAAGAACTGGGAGCAGGGGTGAATCA
GAAAGAGTGGCACCGTAGTGCCTACAAGAGGAGGGTGGAAGGAGGAGCGG
CGGTAGAAGTCGACAAAGCACGGGCTCTGGCGAACGAAGAGTGGAAAAAG
GTGCGCGCCGTAGCCGCGACGGGTGAGGTGTTCAAAGCGATGTCGCGGAC
GGGGGCGGGGGGCGACGCGTACTTCGCCCTGGTGGCGCTCTTCTGCACGG
CAGACAAGCTGGTCGTGCCCGTGGCGTGCCAGGAGTCTCCCATCGAGGTG
GACTTCCTGCACCAGCAGCGGCAGCGGCAGAAGGGGCGCGCGAAGAAGGG
AAAGGATTGTTCGGGCGGGGGCGGCGTCCACGTTATGGTGACCGTGCCGA
GCACGTTCGACATCTACTTGCAGGGCGGGCACGTGGACGAGCGCGGCAGT
GGACAGATGAGGAAGGGGGCTAGCGCCGGTAGCGGTGGGAGAGGTCTCGG
CGGCGCCAGCAGCAGCAGCAGCAGCAGCGTCGGTAGCAGAAAGAAAAACC
CGGCTGAGGCGGCGGCGGACGCTTCGATCGCTCTCCACCTGGTGCGGGTC
AGGGCTGTGGTCGAGGAGGAGATTTGGGTGGTGGGGTCGGATAAGCGGTC
GCGGGCGGGCGACGTCGGGCTGCCGTCGGGTGACGACATGCCTCCCCGCT
CCAATTGTTGATGGAGCAAGGTCAAGAAGAGCATAAGAGTTCCGCTGGAT
TGGCGTCGGCAGCAGACGGAGAAGCAGGGACGCTTCCGTCAAGGGCGAAC
AACGGATTGCCGTCCCAGGCGAATGTGACCAACACCATCACCAAACCGCC
GCTTCTCGCGCTGACGCGTGCGGAACGGCGCATACGAGTCTCCCTGGTGC
CCGAACCAAGCGTCGTGAGCGAGATGGTACGGAATTTTTCTCGAACTTTG
GGAGTGGACGTGCCTAGCCCCGAGCCTCCTCGTGTTTTTGGGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1450:222214..224808+

>mRNA_F-serratus_M_contig1450.3210.1 ID=mRNA_F-serratus_M_contig1450.3210.1|Name=mRNA_F-serratus_M_contig1450.3210.1|organism=Fucus serratus male|type=CDS|length=2148bp|location=Sequence derived from alignment at F-serratus_M_contig1450:222214..224808+ (Fucus serratus male)
ATGGAGGCGGAGGCGAAGCTCGCCGCCGAGAGGCTGCAGAAGGAGGGGAC
TGATCGTTCGTGGCTGCTGCCGACGAACGTGGACTACTACACCGATCGAG
ATGGAGGCGGAGGCGAAGCTCGCCGCCGAGAGGCTGCAGAAGGAGGGGAC
TGATCGTTCGTGGCTGCTGCCGACGAACGTGGACTACTACACCGATCGAG
CGGCGTTGCTGCGAGAGCTGGTGAAGGAGATGCCTGCGGACAAGCGACTC
TCCTTCCAGACACGCGTCGCGAATGCCTGCACCAAGGAGGCGGTGGAGGG
CGTGCTTCTGGACTATGCCACGAGGCTGGAGTGCCTCGTCCTCCCTCACG
CGCGCTCGAGGGATGTCGACCTGCACCAGGTCAAGAAGCGGCGTTGCTGC
GAGAGCTGGTGAAGGAGATGCCTGCGGACAAGCGACTCTCCTTCCAGACA
CGCGTCGCGAATGCCTGCACCAAGGAGGCGGTGGAGGGCGTGCTTCTGGA
CTATGCCACGAGGCTGGAGTGCCTCGTCCTCCCTCACGCGCGCTCGAGGG
ATGTCGACCTGCACCAGGTCAAGAAGGTGCCGAAGAAGGATCCTTCAGAG
CCCCCACACGCGTGGCACGAGGAGCTCTGGGCGACGGTGGAAGAGCGGAT
CATGGAAGGACTTTTGGAGAGCGAGCCCCACGTAGCGGAAGTTGGAAGAA
CTGGGAGCAGGGGTGAATCAGAAAGAGTGGCACCGTGCCGAAGAAGGATC
CTTCAGAGCCCCCACACGCGTGGCACGAGGAGCTCTGGGCGACGGTGGAA
GAGCGGATCATGGAAGGACTTTTGGAGAGCGAGCCCCACGTAGCGGAAGT
TGGAAGAACTGGGAGCAGGGGTGAATCAGAAAGAGTGGCACCGGTGGAAG
GAGGAGCGGCGGTAGAAGTCGACAAAGCACGGGCTCTGGCGAACGAAGAG
TGGAAAAAGGTGCGCGCCGTAGCCGCGACGGGTGAGGTGTTCAAAGCGAT
GTCGCGGACGGGGGCGGGGGGCGACGCGTACTTCGCCCTGGTGGCGCTCT
TCTGCACGGCAGACAAGCTGGTCGTGCCCGTGGCGTGCCAGGAGTCTCCC
ATCGAGGTGGACTTCCTGCACCAGCAGCGGCAGCGGCAGAAGGGGCGCGC
GAAGAAGGGAAAGGATTGTTCGGGCGGGGGCGGCGTCCACGTTATGGTGA
CCGTGCCGAGCACGTTCGACATCTACTTGCAGGGCGGGCACGTGGACGAG
CGCGGCAGTGGACAGATGAGGAAGGGGGCTAGCGCCGGTAGCGGTGGGAG
AGGTCTCGGCGGCGCCAGCAGCAGCAGCAGCAGCAGCGTCGGTAGCAGAA
AGAAAAACCCGGCTGAGGCGGCGGCGGACGCTTCGATCGCTCTCCACCTG
GTGCGGGTCAGGGCTGTGGTCGAGGAGGAGATTTGGGTGGTGGGGTCGGA
TAAGCGGTCGCGGGCGGGCGACGTCGGGCTGCCGTCGGGTGACGACATGC
CTCCCCGCTCCAATTGTTGAGGTGGAAGGAGGAGCGGCGGTAGAAGTCGA
CAAAGCACGGGCTCTGGCGAACGAAGAGTGGAAAAAGGTGCGCGCCGTAG
CCGCGACGGGTGAGGTGTTCAAAGCGATGTCGCGGACGGGGGCGGGGGGC
GACGCGTACTTCGCCCTGGTGGCGCTCTTCTGCACGGCAGACAAGCTGGT
CGTGCCCGTGGCGTGCCAGGAGTCTCCCATCGAGGTGGACTTCCTGCACC
AGCAGCGGCAGCGGCAGAAGGGGCGCGCGAAGAAGGGAAAGGATTGTTCG
GGCGGGGGCGGCGTCCACGTTATGGTGACCGTGCCGAGCACGTTCGACAT
CTACTTGCAGGGCGGGCACGTGGACGAGCGCGGCAGTGGACAGATGAGGA
AGGGGGCTAGCGCCGGTAGCGGTGGGAGAGGTCTCGGCGGCGCCAGCAGC
AGCAGCAGCAGCAGCGTCGGTAGCAGAAAGAAAAACCCGGCTGAGGCGGC
GGCGGACGCTTCGATCGCTCTCCACCTGGTGCGGGTCAGGGCTGTGGTCG
AGGAGGAGATTTGGGTGGTGGGGTCGGATAAGCGGTCGCGGGCGGGCGAC
GTCGGGCTGCCGTCGGGTGACGACATGCCTCCCCGCTCCAATTGTTGA
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