mRNA_F-serratus_M_contig1450.3201.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1450.3201.1
Unique NamemRNA_F-serratus_M_contig1450.3201.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1450.3201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1450contigF-serratus_M_contig1450:53889..54934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size376
Cds size375
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1450.3201.1prot_F-serratus_M_contig1450.3201.1Fucus serratus malepolypeptideF-serratus_M_contig1450 53889..54934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929435.330391-CDS-F-serratus_M_contig1450:53888..540391622929435.330391-CDS-F-serratus_M_contig1450:53888..54039Fucus serratus maleCDSF-serratus_M_contig1450 53889..54039 -
1690962850.83909-CDS-F-serratus_M_contig1450:53888..540391690962850.83909-CDS-F-serratus_M_contig1450:53888..54039Fucus serratus maleCDSF-serratus_M_contig1450 53889..54039 -
1622929435.3457496-CDS-F-serratus_M_contig1450:54243..543461622929435.3457496-CDS-F-serratus_M_contig1450:54243..54346Fucus serratus maleCDSF-serratus_M_contig1450 54244..54346 -
1690962850.8491414-CDS-F-serratus_M_contig1450:54243..543461690962850.8491414-CDS-F-serratus_M_contig1450:54243..54346Fucus serratus maleCDSF-serratus_M_contig1450 54244..54346 -
1622929435.3584735-CDS-F-serratus_M_contig1450:54813..549341622929435.3584735-CDS-F-serratus_M_contig1450:54813..54934Fucus serratus maleCDSF-serratus_M_contig1450 54814..54934 -
1690962850.858205-CDS-F-serratus_M_contig1450:54813..549341690962850.858205-CDS-F-serratus_M_contig1450:54813..54934Fucus serratus maleCDSF-serratus_M_contig1450 54814..54934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1450.3201.1

>prot_F-serratus_M_contig1450.3201.1 ID=prot_F-serratus_M_contig1450.3201.1|Name=mRNA_F-serratus_M_contig1450.3201.1|organism=Fucus serratus male|type=polypeptide|length=125bp
MARRRDKRQGPFLPMEKERLRDPLVFGRWGGPLRCDGRSPAPQAECLRWS
SGRDEADLEGLAQRYQLPGFDPIQVGFIGHLRQRQECCRRPWVQPFPHQA
RTRMRSSHLPRETRCRMLLSLILTS
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mRNA from alignment at F-serratus_M_contig1450:53889..54934-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1450.3201.1 ID=mRNA_F-serratus_M_contig1450.3201.1|Name=mRNA_F-serratus_M_contig1450.3201.1|organism=Fucus serratus male|type=mRNA|length=1046bp|location=Sequence derived from alignment at F-serratus_M_contig1450:53889..54934- (Fucus serratus male)
ATGGCAAGGAGGCGAGACAAAAGGCAGGGGCCGTTTCTGCCGATGGAGAA
GGAGCGATTACGGGATCCTCTTGTGTTCGGCAGGTGGGGTGGTCCGTTGC
GGTGCGACGGCAGATCTCCAGGTGAGACCCTCCCCGCTAGCGTGCGGTAC
GCGGTGTTCGAGGCCCGGGAACAATGGTATCATCGTAGGGCTCACCTGGT
GGATGGCCAAATCTTGGCGGGCGATGAGTCTCACAAGATGACGAAATCAA
TCAGAGTCACAGACGCCAAGGAGAGTGTACAACGTGGTGAATGAGTCCAA
CCTGATGGTGCTTTAGGCAGTTTTTGTTCTTTCCTTCTTTTAGTGCGAGC
ACGTTCTATTCGTGCGTATATTTCGAGAAGCAGGCCATAGTTTGCGTTTT
ACGTCATCATCGGTTCGCAGCATGTTGGACATGTTCTCTTCCGTGCTGCT
ACAAGAGCATGTTCAGTCTATGTATGGTCATAGTCCTCACACATATAGCA
AGAGTATGGATCAACCGGGTAAGGTTGCCAGTCCTGCACATGGTCAGCTT
AAGAGGAAAAATGAATTTTGTACCATGTAGATTTCCAGCGCCCCAAGCGG
AATGTCTCCGTTGGAGCTCTGGACGAGACGAAGCGGATCTGGAAGGGCTT
GCCCAACGGTATCAGCTGCCTGGATTCGACCCTATCCAGGTGCGTCCCCA
GGCTTGAATCGAGACGTTTTCTGCATGTGGCACTTGGCGGTGCACAGCCG
TGTTGCACCGCTTACCCATACGAATGTTTTTCCTTGATGAACTGAACGTA
ATCGTGCAGATGAAAACGCAAAGGGAACCCCCATTCTCAGCCTTTTGTTG
GGGGCCATCATAACCCCTATCCCCTCTTTCGTATATTTAAAAAAGTGGTT
TCATTGGACATTTACGGCAACGACAAGAATGTTGCAGGCGGCCATGGGTC
CAGCCTTTTCCACACCAGGCGAGAACGCGAATGCGCTCCTCCCACCTGCC
ACGAGAGACTCGCTGCCGCATGTTGCTCTCCCTCATCCTTACAAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1450:53889..54934-

>mRNA_F-serratus_M_contig1450.3201.1 ID=mRNA_F-serratus_M_contig1450.3201.1|Name=mRNA_F-serratus_M_contig1450.3201.1|organism=Fucus serratus male|type=CDS|length=750bp|location=Sequence derived from alignment at F-serratus_M_contig1450:53889..54934- (Fucus serratus male)
ATGGCAAGGAGGCGAGACAAAAGGCAGGGGCCGTTTCTGCCGATGGAGAA
GGAGCGATTACGGGATCCTCTTGTGTTCGGCAGGTGGGGTGGTCCGTTGC
GGTGCGACGGCAGATCTCCAGATGGCAAGGAGGCGAGACAAAAGGCAGGG
GCCGTTTCTGCCGATGGAGAAGGAGCGATTACGGGATCCTCTTGTGTTCG
GCAGGTGGGGTGGTCCGTTGCGGTGCGACGGCAGATCTCCAGCGCCCCAA
GCGGAATGTCTCCGTTGGAGCTCTGGACGAGACGAAGCGGATCTGGAAGG
GCTTGCCCAACGGTATCAGCTGCCTGGATTCGACCCTATCCAGGTCGCCC
CAAGCGGAATGTCTCCGTTGGAGCTCTGGACGAGACGAAGCGGATCTGGA
AGGGCTTGCCCAACGGTATCAGCTGCCTGGATTCGACCCTATCCAGGTTG
GTTTCATTGGACATTTACGGCAACGACAAGAATGTTGCAGGCGGCCATGG
GTCCAGCCTTTTCCACACCAGGCGAGAACGCGAATGCGCTCCTCCCACCT
GCCACGAGAGACTCGCTGCCGCATGTTGCTCTCCCTCATCCTTACAAGCT
GGTTTCATTGGACATTTACGGCAACGACAAGAATGTTGCAGGCGGCCATG
GGTCCAGCCTTTTCCACACCAGGCGAGAACGCGAATGCGCTCCTCCCACC
TGCCACGAGAGACTCGCTGCCGCATGTTGCTCTCCCTCATCCTTACAAGC
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