mRNA_F-serratus_M_contig1450.3200.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1450.3200.1
Unique NamemRNA_F-serratus_M_contig1450.3200.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1450.3200.1 vs. uniprot
Match: D7G0J2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J2_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.210e-9
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = -1 
Query:  565 DCDYTTLACTELIASARKGVRNVPGEVVVFGIDAEWSVWATGVR-PVAVIQLSTIEGYTVVSHIKPNERRAGVFPKALQELLENEDVLL 828
            +C+ ++  C +L+  AR     V       G D EWSV  +G R  VA++QLS  +GYTV+ H+K  ERR G+ P AL+ELL N+ + L
Sbjct:   98 NCELSSRICLQLLRRARASAPAV------LGFDIEWSVRPSGPRRQVALVQLSARDGYTVLFHLKYEERRRGILPTALKELLVNDTIQL 180
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1450.3200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0J2_ECTSI2.210e-941.573'-5' exonuclease domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1450contigF-serratus_M_contig1450:53035..53865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size831
Cds size450
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929435.5491188-UTR-F-serratus_M_contig1450:53034..534151622929435.5491188-UTR-F-serratus_M_contig1450:53034..53415Fucus serratus maleUTRF-serratus_M_contig1450 53035..53415 +
1690962850.9300945-UTR-F-serratus_M_contig1450:53034..534151690962850.9300945-UTR-F-serratus_M_contig1450:53034..53415Fucus serratus maleUTRF-serratus_M_contig1450 53035..53415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929435.5686262-CDS-F-serratus_M_contig1450:53415..538651622929435.5686262-CDS-F-serratus_M_contig1450:53415..53865Fucus serratus maleCDSF-serratus_M_contig1450 53416..53865 +
1690962850.9392648-CDS-F-serratus_M_contig1450:53415..538651690962850.9392648-CDS-F-serratus_M_contig1450:53415..53865Fucus serratus maleCDSF-serratus_M_contig1450 53416..53865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1450.3200.1prot_F-serratus_M_contig1450.3200.1Fucus serratus malepolypeptideF-serratus_M_contig1450 53416..53865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1450.3200.1

>prot_F-serratus_M_contig1450.3200.1 ID=prot_F-serratus_M_contig1450.3200.1|Name=mRNA_F-serratus_M_contig1450.3200.1|organism=Fucus serratus male|type=polypeptide|length=150bp
MAHGSSRLTAYSHQRKKIRERHSLPPKGSVTKSKQSSYWILVDAPVPASR
QSKPRIISFAYQEDILVLQKLLKCLGEDPGSALVRLDVGNDGVAFYGRKL
YHSYWSNSGGPDAPLCIDTKHDHLTRYVPYSFPRTRNQLRACQCRIVAIH
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mRNA from alignment at F-serratus_M_contig1450:53035..53865+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1450.3200.1 ID=mRNA_F-serratus_M_contig1450.3200.1|Name=mRNA_F-serratus_M_contig1450.3200.1|organism=Fucus serratus male|type=mRNA|length=831bp|location=Sequence derived from alignment at F-serratus_M_contig1450:53035..53865+ (Fucus serratus male)
GAGGAAAATACGCGGAGTCTATATCTCAACAAAGTAGCCCTTAAAATGAC
TCTTACGGAACTATCCATGCCAGTACACAGAGTGCTAACTTATGTCTTCG
TCCATACGCTCTAACAAACAGAAAACAAAAACGGCGGCGAACAGGAAACA
CAGAGCAAGGGACCTTCACAGCACTAACGTACCTGATCGTCAGATAAGAG
CTTGCTCCCAGTCGCTTATACGAACATTACCCTTGAAAAGTCGCTGACCG
AGTAGTGTTGCACATAAATCTTCCAACGGACACGACCCAACACCAATTCT
CAAGTGTTTCGTCGCCAGCTGTCCCAGATCCACCTTACCTGTTCCCTCCA
CGTTGTACCTATTTCTGATAAGCGTAAGATCATGGCCCACGGTAGTTCCC
GCCTGACAGCATATTCACACCAGAGAAAGAAAATACGGGAGCGACATTCG
CTACCCCCGAAGGGTTCTGTCACCAAATCAAAACAAAGCAGCTACTGGAT
ACTTGTCGACGCACCAGTGCCGGCCTCCCGCCAATCAAAACCACGCATAA
TCTCTTTCGCATACCAGGAGGACATCCTCGTTCTCCAAAAGCTCTTGAAG
TGCCTTGGGGAAGACCCCGGCTCTGCGCTCGTTCGGCTTGATGTGGGAAA
CGACGGTGTAGCCTTCTATGGTAGAAAGCTGTATCACAGCTACTGGTCTA
ACTCCGGTGGCCCAGACGCTCCACTCTGCATCGATACCAAACACGACCAC
CTCACCCGGTACGTTCCTTACTCCTTTCCGCGCACTCGCAATCAGCTCCG
TGCATGCCAGTGTCGTATAGTCGCAATCCAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1450:53035..53865+

>mRNA_F-serratus_M_contig1450.3200.1 ID=mRNA_F-serratus_M_contig1450.3200.1|Name=mRNA_F-serratus_M_contig1450.3200.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig1450:53035..53865+ (Fucus serratus male)
ATGGCCCACGGTAGTTCCCGCCTGACAGCATATTCACACCAGAGAAAGAA
AATACGGGAGCGACATTCGCTACCCCCGAAGGGTTCTGTCACCAAATCAA
AACAAAGCAGCTACTGGATACTTGTCGACGCACCAGTGCCGGCCTCCCGC
CAATCAAAACCACGCATAATCTCTTTCGCATACCAGGAGGACATCCTCGT
TCTCCAAAAGCTCTTGAAGTGCCTTGGGGAAGACCCCGGCTCTGCGCTCG
TTCGGCTTGATGTGGGAAACGACGGTGTAGCCTTCTATGGTAGAAAGCTG
TATCACAGCTACTGGTCTAACTCCGGTGGCCCAGACGCTCCACTCTGCAT
CGATACCAAACACGACCACCTCACCCGGTACGTTCCTTACTCCTTTCCGC
GCACTCGCAATCAGCTCCGTGCATGCCAGTGTCGTATAGTCGCAATCCAT
ATGGCCCACGGTAGTTCCCGCCTGACAGCATATTCACACCAGAGAAAGAA
AATACGGGAGCGACATTCGCTACCCCCGAAGGGTTCTGTCACCAAATCAA
AACAAAGCAGCTACTGGATACTTGTCGACGCACCAGTGCCGGCCTCCCGC
CAATCAAAACCACGCATAATCTCTTTCGCATACCAGGAGGACATCCTCGT
TCTCCAAAAGCTCTTGAAGTGCCTTGGGGAAGACCCCGGCTCTGCGCTCG
TTCGGCTTGATGTGGGAAACGACGGTGTAGCCTTCTATGGTAGAAAGCTG
TATCACAGCTACTGGTCTAACTCCGGTGGCCCAGACGCTCCACTCTGCAT
CGATACCAAACACGACCACCTCACCCGGTACGTTCCTTACTCCTTTCCGC
GCACTCGCAATCAGCTCCGTGCATGCCAGTGTCGTATAGTCGCAATCCAT
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