mRNA_F-serratus_M_contig145.3195.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig145.3195.1
Unique NamemRNA_F-serratus_M_contig145.3195.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig145.3195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig145contigF-serratus_M_contig145:741653..745540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig145.3195.1prot_F-serratus_M_contig145.3195.1Fucus serratus malepolypeptideF-serratus_M_contig145 741807..745540 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929431.3210084-UTR-F-serratus_M_contig145:741652..7418061622929431.3210084-UTR-F-serratus_M_contig145:741652..741806Fucus serratus maleUTRF-serratus_M_contig145 741653..741806 +
1690962848.8116336-UTR-F-serratus_M_contig145:741652..7418061690962848.8116336-UTR-F-serratus_M_contig145:741652..741806Fucus serratus maleUTRF-serratus_M_contig145 741653..741806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929431.3352294-CDS-F-serratus_M_contig145:741806..7419521622929431.3352294-CDS-F-serratus_M_contig145:741806..741952Fucus serratus maleCDSF-serratus_M_contig145 741807..741952 +
1690962848.8200154-CDS-F-serratus_M_contig145:741806..7419521690962848.8200154-CDS-F-serratus_M_contig145:741806..741952Fucus serratus maleCDSF-serratus_M_contig145 741807..741952 +
1622929431.3531713-CDS-F-serratus_M_contig145:745455..7455401622929431.3531713-CDS-F-serratus_M_contig145:745455..745540Fucus serratus maleCDSF-serratus_M_contig145 745456..745540 +
1690962848.8279214-CDS-F-serratus_M_contig145:745455..7455401690962848.8279214-CDS-F-serratus_M_contig145:745455..745540Fucus serratus maleCDSF-serratus_M_contig145 745456..745540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig145.3195.1

>prot_F-serratus_M_contig145.3195.1 ID=prot_F-serratus_M_contig145.3195.1|Name=mRNA_F-serratus_M_contig145.3195.1|organism=Fucus serratus male|type=polypeptide|length=77bp
MKVWQGAPSCAVHTNAQHLAMVTTENYLHGPNQKWALDFSQTKHIAFDLN
ETRGVKRISSYTLQTEQVGVHTTLKSS
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mRNA from alignment at F-serratus_M_contig145:741653..745540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig145.3195.1 ID=mRNA_F-serratus_M_contig145.3195.1|Name=mRNA_F-serratus_M_contig145.3195.1|organism=Fucus serratus male|type=mRNA|length=3888bp|location=Sequence derived from alignment at F-serratus_M_contig145:741653..745540+ (Fucus serratus male)
AGCAAATGCGCCGCAACCTACGTCCAATCATCTAAGACCGACAATATATG
TTACGTTTCAAGTAACACGCCTGTCAACACTATTACACTAGCCCACCCTG
GGAAGCCTGGGATAAGCGCAAGCAGTGCGAAAGACCGGCTGACCAAAACG
TCCAATGAAAGTTTGGCAGGGGGCGCCTAGCTGCGCTGTCCACACCAATG
CTCAACACCTAGCGATGGTTACTACAGAGAATTATCTGCACGGCCCAAAC
CAGAAGTGGGCGTTAGATTTCTCTCAAACTAAACATATTGCATTCGACTT
GCAAACAGCGGCGAAAGTTCAAACAACGGATTTTTGCGCGAATCAAGAGC
AGTGACGTACTATTGTAACTACTGCATAAAACCACGACCGCACGATAACA
GTACCGAAACGACCTCCCGTTACTATTCTATAGCCAAGATGAGATCCTCG
CAGACCCACACAGAGTACTTCCTATGGTCCCAGCGCCGGATTCATCAGTA
TCATAGTACAGTACCAAACACTCTTCCGTTATCTGTTTATGCCCAATCAA
ATGAAATCCTCGCAGACCCAAAACGAAAACACTTCCGACGGTCCCAGCGT
TGGATTCATCATTACAAATATCGGCCCACCGGTACTATCTTGGCCGGCCA
ATTTCTCGAAGATGGGACGGTCTTCTGTCAGCGTGCCGTCCGTAAGCGTC
TTCTACGCTGAACTGGGAGAGGATGTTCTTGATCTTGCGCTCGAGGCTCG
AAGTCTACCTGTCAAAACAAATTATACTGTATGGGAAATTTTCGAATCCA
GAAACAAAACCACGCGCAAGACATTTTGCAATAATGGACACTGTCGTCAA
TCAGAACTGTCGTTCGATCCTCAGTTTCTCGTCCATTTTGTAGTTGTCTG
TAACTCGATCACACACCTTCATCATGACACCCTTTTTCAAAAGGAAAGTC
AGAAGGAGATGAAATGCCGATGGGTGCTGCTCTCGTGAGCATACCCTTTT
AAAAAAACGGCTACCCGCGGTATCAACTTGTCACCGAGTAGTCCGTGGGC
GCTAAGTAACACGTAGCCCACCCAAGCCCAAACCTCGGGCTTGAAGCGTC
AGTTATCATCAGTAAGCTGTACGCTGATGATGTCTTTCGTGGCCATAAAC
CACTAGTCCCAGGAAAAGGGAACTCAACCCATAGTCTAGTCTAGCTGGGG
TCAAGAATTTTCAGCTCCGCACGTTGTCGCTTACAAACGGAGAATGGTCT
GTACATTTAGACAGGACCAAAATCAAGTGTTACTCGTAAAGACTAGATAG
CCCTCACAATACTGTACGTAGTTTCATTTTTGGTTGGTTGCCACAATCTT
CGTTTCATAGTAGAGTAACTTGCCTGGCTTCCCAATACCTATTTCTTGGA
ATTTCGTGTCGTGTCCATTTTTTGTGGTTACGGCAAAACGCTACGCCCCT
TTTAATGACTTCTCGATCAGATGTCACCCTTGAGATGTTCGGCTAACATT
CGTCTGGTGACATTGTAGCTCTGACGCTAACCAACGATCAATAAGCCCGT
AGACGATTTCGCTTAGTTCTTTACCGTTGTCAGTTGCTGGAGTGGATCCC
TATTATCTTGTTGTTGTTGTTTTCTTGTCTCAATCAACACTCTGATTAAT
CACGCATATTTTCAGAGATGCGTTGCTCAAGCGTTTGCTGGTAGTATTTT
CGCCCTAGGTTAGAATTGTTCTTGTGTACAGCAATAATGCGAGAATTCAT
CTCGGCATCTACCGTAAAATGATCTCCCCCTCTGGACTACGAACAAGAGG
GCATCGCTCAGCGTCCTCCGTTCCTATCACGTTCGATTACCTATTATGGC
TTTTGTCAGTTTCGACGCCCGGCACGCCCGTGATATTCATTTTCTGCCAT
TACGGCAACTTACGGCTCCAATACTGTGTTGACCGTATTGAATGGTTTCT
CTGTGGTCACATTTGCAACCAACTGGAATGGGTTTTTTTTTCTGTGGTCA
CATTCAGTGAAGTAAATCGTCAGGCGGATTTTACCCACGTTTTTGCAACC
AAGCTCCTCCCGGCTATATTTGTTCGTACGGTCGCAACAACGTGGACCAT
TAAACAGGATATATTTTTCAGAATCGAGACCGTAGCCTTTTTCAGCTTCG
TCCTTCTTACTTTTTACCCTTGTATTGGCTACTTCTGGCCAACACTATTC
TTCTTCCCCAATTCGGGGTTGAGACATTACGATAGAGTCTTTCCAAGACT
GTTGTATGTTGTCTCTGTCATGGATACTAGCATCCACGGCAGCCCTAATG
TGTCAGTTTTTTTTTTTGTTTCAACACCGGTGTTTCATTATGGGGCGCCT
TTCTTCCAGGAAAGCGAGTCTCCATAGAGGGACACTTCATTCGCTTGATA
AATTGAGGGCCGTGTTGGCATATACCCGGAGAACATCGGAGAGGAAAGGG
ATGACCGCAGTTAGAATGATGGGCACGAGTATGGGCAGTGAGGAAGGGCC
TCCAAGACCTGCGCAGCGGGATAAAATCCGCGACTTCACAGACGCCGCCG
AGCCTAGAGGGCAATGCAGGGGAGAACCCTCAGAGACTGCAACAGGGCAG
ATGTCCTTGATTCTGAGTATAGGGCAGATGTCCTTGATTCGGAGTATGCG
CAGTTCTCGGAGGCCCTTCCTCGCTGCCTATACTCAGAGTCAAGGACATC
TGCCCTGTTGCAGTTTCTGAGGGTTCTCCCCTGCATTGCCCTCTACGCTC
GACGGCGTCTGTGAAGTCGCGGATTTTATCCCGCTGCGCAGGTCTTGGAG
GCCCTTCCTCACTGCCCATACTCCGAATCAAGGACATCTGCCCTATACTC
AGAATCAAGGACATCTGCCCTGTTGCAGTCTCTGAGGGTTCTCCCCTGCA
TTGCCCTCTAGGCTCGGCGGCGTCTGTGAAGTCGCGGATTTTATCCCGCT
GCGCAGGTCTTGGAGGCCCTTCCTCACTGCCCATACTCGTGCCCATCATT
CTAACTGCGGTCATCCCTTTCCTCTCCGATGTTCTCCGGGTATATGCCAA
CACGGCCCTCAATTTATCAAGCGAATGAAGTGTCCCTCTATGGAGACTCG
CTTTCCTCGGTGGCCCTCAAAGCGAATAAAGTGTCCCTCTATGGAGACTC
GCTTTCCTCGATGAGCCTCAAAGCGAATGAAGTGTCCCTCTATGGGGACT
CGCTTTCCTCGATGATGCTCAAAGCGAATGAAGTGTCCCTCTATGGAGAC
TCGCTTTCCTCGATGAACCTCAAAGCGACTGAAGTGTCCCTCTATGGAGA
CTCGCTTTCCCTGATGGCCCTCAAAGCGACTGAAGTGTCCCTCTATGGAG
ACTCGCTTTTTCTCGATGACCCTCAAAGCGACTGAAGTGTCCCTCTATGG
AGACTCGCTTTCCCTGATGGCCCTCAAAGCGACTGAAGTGTCCCTCTATG
GAGACTCGCTTTTTTTTCGAAGACCCTCAAAGCGACTGAAGTGTCCCTCT
ATGGAGACTCGCTTTTTTCGAAGACCCTCAAAGCGACTGAGGTGTCCCTC
TATGGAGACTCGCTTTTTTCGAAGACCCTCAAAGCGACTGAAGTGTCCCT
CTATGGAGACTCGCTTTTTCCCCAGAGAACGGCCTGACCACCGTCCTACC
GTCGACGCCAAATTGTTATGGAGTTATCCAACTCCCTGTAGATTCTTTGA
CGGTGGTATGTGTCTCCCTCAGGAGACCAGGCGAAGGATGGATGTATAAA
AAGGTATCTTCGTTAACTTTCGTCCCTTGAAGTACCTACCGACTTACTCA
TAGAAATGAAACACGAGGAGTCAAACGTATATCAAGTTACACGTTGCAGA
CTGAACAGGTGGGGGTTCACACCACCCTAAAATCAAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig145:741653..745540+

>mRNA_F-serratus_M_contig145.3195.1 ID=mRNA_F-serratus_M_contig145.3195.1|Name=mRNA_F-serratus_M_contig145.3195.1|organism=Fucus serratus male|type=CDS|length=462bp|location=Sequence derived from alignment at F-serratus_M_contig145:741653..745540+ (Fucus serratus male)
ATGAAAGTTTGGCAGGGGGCGCCTAGCTGCGCTGTCCACACCAATGCTCA
ACACCTAGCGATGGTTACTACAGAGAATTATCTGCACGGCCCAAACCAGA
AGTGGGCGTTAGATTTCTCTCAAACTAAACATATTGCATTCGACTTATGA
AAGTTTGGCAGGGGGCGCCTAGCTGCGCTGTCCACACCAATGCTCAACAC
CTAGCGATGGTTACTACAGAGAATTATCTGCACGGCCCAAACCAGAAGTG
GGCGTTAGATTTCTCTCAAACTAAACATATTGCATTCGACTTAAATGAAA
CACGAGGAGTCAAACGTATATCAAGTTACACGTTGCAGACTGAACAGGTG
GGGGTTCACACCACCCTAAAATCAAGCAAATGAAACACGAGGAGTCAAAC
GTATATCAAGTTACACGTTGCAGACTGAACAGGTGGGGGTTCACACCACC
CTAAAATCAAGC
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