mRNA_F-serratus_M_contig145.3194.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig145.3194.1
Unique NamemRNA_F-serratus_M_contig145.3194.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig145.3194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig145contigF-serratus_M_contig145:651692..653709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size755
Cds size459
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig145.3194.1prot_F-serratus_M_contig145.3194.1Fucus serratus malepolypeptideF-serratus_M_contig145 651692..653414 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929431.251165-CDS-F-serratus_M_contig145:651691..6521401622929431.251165-CDS-F-serratus_M_contig145:651691..652140Fucus serratus maleCDSF-serratus_M_contig145 651692..652140 +
1690962848.779769-CDS-F-serratus_M_contig145:651691..6521401690962848.779769-CDS-F-serratus_M_contig145:651691..652140Fucus serratus maleCDSF-serratus_M_contig145 651692..652140 +
1622929431.2713678-CDS-F-serratus_M_contig145:653404..6534141622929431.2713678-CDS-F-serratus_M_contig145:653404..653414Fucus serratus maleCDSF-serratus_M_contig145 653405..653414 +
1690962848.795252-CDS-F-serratus_M_contig145:653404..6534141690962848.795252-CDS-F-serratus_M_contig145:653404..653414Fucus serratus maleCDSF-serratus_M_contig145 653405..653414 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929431.2856002-UTR-F-serratus_M_contig145:653414..6537091622929431.2856002-UTR-F-serratus_M_contig145:653414..653709Fucus serratus maleUTRF-serratus_M_contig145 653415..653709 +
1690962848.8032448-UTR-F-serratus_M_contig145:653414..6537091690962848.8032448-UTR-F-serratus_M_contig145:653414..653709Fucus serratus maleUTRF-serratus_M_contig145 653415..653709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig145.3194.1

>prot_F-serratus_M_contig145.3194.1 ID=prot_F-serratus_M_contig145.3194.1|Name=mRNA_F-serratus_M_contig145.3194.1|organism=Fucus serratus male|type=polypeptide|length=153bp
PPPGPYENLRISRLRHVNSHFPANIRRETKDVATRVQAAFEEYGSNHCCV
ARAVKLATAPDIKLSPPLRTDILRLRDLLDKAYDSPSGAAWIQGAPCQTA
SSGSDTSSSAGPRRREEPSSGRGNSKKAAITSDSEDTQQESRGRSFRDRR
KG*
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mRNA from alignment at F-serratus_M_contig145:651692..653709+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig145.3194.1 ID=mRNA_F-serratus_M_contig145.3194.1|Name=mRNA_F-serratus_M_contig145.3194.1|organism=Fucus serratus male|type=mRNA|length=2018bp|location=Sequence derived from alignment at F-serratus_M_contig145:651692..653709+ (Fucus serratus male)
CCGCCCCCCGGCCCCTACGAGAACCTCCGTATTTCGAGACTAAGACACGT
CAACAGCCACTTCCCTGCGAACATCCGCCGGGAAACCAAAGACGTGGCCA
CCCGTGTTCAAGCAGCTTTCGAAGAATACGGGAGCAATCACTGCTGTGTC
GCTCGCGCCGTCAAGTTGGCCACCGCACCGGACATCAAGCTGAGCCCACC
GCTTCGCACCGATATCTTGCGCCTTCGCGACCTTCTCGATAAGGCGTACG
ACTCTCCGTCTGGAGCCGCATGGATCCAGGGCGCCCCCTGCCAGACCGCT
TCCTCGGGGAGCGACACCTCTTCTTCCGCGGGACCCCGACGCCGCGAGGA
GCCGTCTAGCGGACGGGGGAACTCCAAAAAGGCGGCCATCACCTCGGATA
GCGAGGACACCCAGCAGGAGTCTCGAGGACGCTCTTTTCGGGACCGGAGG
CAAGTGCCAACGTTTTACCACTCCGACGACGACAGTGATGCCCCTTGTTT
TCCCCCGCGTATCTTTCGGTACCGGACGCACTCACGGCGACGGCGCACAT
GCGCACCCCCTCGCGCTGCCGTCCCCGCGGCCAGCTCCCCCCCATCGTTA
CAGAGCATTATCCAAGCAGCCACCACGGCAGCGATAGCCGCCGTGGACCA
CCACCTAGCCAACTTAGGGTTGTTTCCGCGACCGGACACCGACTATACGC
CCGACACAGTACCCCAGCAGGCTATCGATTCCCCTGAAGTACAGTACCCC
GTAGGTAGCACCGCCCATATACCGTACTCCCTTAATTTTTGTCCCCCCTT
AGGTCCCCACAATGCAGAAATACCCCAGCAGGCTGTCGATCCCCCTGAAG
TACAGTACCCCGTAGGTAGCACCGCCCATATACCGTACTCCCTTAATTTT
TGTCCCCCCTTAGGTCCCCACAATGCAGAAATACCCCAGCAGGCTGTTGA
TCCCCCTGAAGTACAGTACCCCGTAGGTAGCACCGCCCATATACCGTACT
CCCTTAATTTTTGCCCCCCCTTAGGTCCCCACAATGCAGAAGTACCCCAG
CAGTCTGTCGATCCCCCTGGCGTACAGTACCCCCTAGGGAACACCGCCTA
TGTACCGCACTCCAGAAGAATTCCCCCACAGATTGCCATTCCCCCGGGTC
AGACGAGTGCTGTGAACCCTCTCGCCCACCTTCCCCCCCGCGTACAGTAC
CCCATAGTGAAAACTGCTGGTGTACAGTACCCCGTGGCAAACACAATGCA
TGTACTGTACCCCCCCACGGCCCCCGCTGGTGTACCGTAcCCCCCTCCCA
ACGTCCCCCCGAGGATGGCCCCGACAGACGAGCGCCCCTTGTATGACGAC
AGTTCATGCAACAGCTCACAACCATCCAACCCTTCGGGCCCCCACCCGGA
CTTCGTTGCCCACGTACAGGCTGCCTTTCGCACCCTGGACACGCGCAGAA
TTTCCCGCATCCAACCATTGCAGTTCCCCCCTTCCGCGGACAGAACTGCC
GCTACTCAACTCTTGACTCGCTCTATCCGCGACGCGCTGTCAGGGATCTT
TGACGTAGCTGATCCTACCGGGACTGTGACCATGGACTCCCCTGTTTGGA
TTCCCGGGTGGCATGCACCGCTTCTCAAGCTGGTCAAAGCGGCTATCATT
GCTAACCGCGACGACACTCATGACCTACACCGCCTCGTCGACGATCTGTT
CTTACAATTACAGGAAAGGCTGAGCTCCGGCTCCAGTGGTCCAGACGCGT
TCAAGACTCTGCTTACGGACTTCGCTGATTACTTTGACAGAGCACCACGT
GGAGCCGCGCTCGAGACTCTTCAGCGATTTGGAGTTCGTACGGGAACTCC
ATTCTCTAGCTACCTACGGGCCCTTCGCGTTGTCGTAGCCAGTACGGTAG
AGAAAGGCGGCCCGTTGGCGCCTTCCGCGACGATGGCCATTGAGCTTATT
AGAATACGTACGGCTCAACAGTATCCCACGCTGATGCCCACTTTGTTCCC
AGGGGATCGAGCGACTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig145:651692..653709+

>mRNA_F-serratus_M_contig145.3194.1 ID=mRNA_F-serratus_M_contig145.3194.1|Name=mRNA_F-serratus_M_contig145.3194.1|organism=Fucus serratus male|type=CDS|length=918bp|location=Sequence derived from alignment at F-serratus_M_contig145:651692..653709+ (Fucus serratus male)
CCGCCCCCCGGCCCCTACGAGAACCTCCGTATTTCGAGACTAAGACACGT
CAACAGCCACTTCCCTGCGAACATCCGCCGGGAAACCAAAGACGTGGCCA
CCCGTGTTCAAGCAGCTTTCGAAGAATACGGGAGCAATCACTGCTGTGTC
GCTCGCGCCGTCAAGTTGGCCACCGCACCGGACATCAAGCTGAGCCCACC
GCTTCGCACCGATATCTTGCGCCTTCGCGACCTTCTCGATAAGGCGTACG
ACTCTCCGTCTGGAGCCGCATGGATCCAGGGCGCCCCCTGCCAGACCGCT
TCCTCGGGGAGCGACACCTCTTCTTCCGCGGGACCCCGACGCCGCGAGGA
GCCGTCTAGCGGACGGGGGAACTCCAAAAAGGCGGCCATCACCTCGGATA
GCGAGGACACCCAGCAGGAGTCTCGAGGACGCTCTTTTCGGGACCGGAGC
CGCCCCCCGGCCCCTACGAGAACCTCCGTATTTCGAGACTAAGACACGTC
AACAGCCACTTCCCTGCGAACATCCGCCGGGAAACCAAAGACGTGGCCAC
CCGTGTTCAAGCAGCTTTCGAAGAATACGGGAGCAATCACTGCTGTGTCG
CTCGCGCCGTCAAGTTGGCCACCGCACCGGACATCAAGCTGAGCCCACCG
CTTCGCACCGATATCTTGCGCCTTCGCGACCTTCTCGATAAGGCGTACGA
CTCTCCGTCTGGAGCCGCATGGATCCAGGGCGCCCCCTGCCAGACCGCTT
CCTCGGGGAGCGACACCTCTTCTTCCGCGGGACCCCGACGCCGCGAGGAG
CCGTCTAGCGGACGGGGGAACTCCAAAAAGGCGGCCATCACCTCGGATAG
CGAGGACACCCAGCAGGAGTCTCGAGGACGCTCTTTTCGGGACCGGAGGA
AAGGCTGAGAAAGGCTGA
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